Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8111366.1

Orthogroup ID

OG0007667

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 530

Gene Structure 530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8111366.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

atggtgatgataaagaaaggggaagagaagagcagtgattacagtgcaaagggaatgcgactgggaaaatacgagttgggaaagactctcggcgagggcaatttcggcaaagtcaagtttgctaaggacgtcggcaccggccaaccatttgccgttaagattctagagaagaagagaattaacgaccacaacatcgccgaccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

68

Amino Acids

7.53

Weight (kDa)

9.6

Isoelectric Point (pI)

16.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01140 AT1G01140 AT1G01140
fragaria_vesca	FvH4_7g17430 FvH4_7g17430 FvH4_7g17430 FvH4_7g17430 FvH4_7g17430
malus_domestica	MD01G1087300.v1.1 MD07G1157500.v1.1
prunus_persica	Prupe.2G195900_v2.0.a1 Prupe.2G195900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360871
rosa_laevigata	RLG00000027776
rosa_multiflora	Rmu_co8111366.1_g000001 Rmu_sc0000677.1_g000045
rosa_roxburghii	Rroxscaffold_4G00295740
rosa_rugosa	Rorug01G0282600 Rorug01G0282700 Rorug01G0282800
rosa_samantha	Rh1BG259300 Rh1DG289300 Rh5DG353600
rosa_wichuraiana	Rw1G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	129
AoxI	GGCC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	71
BmuI	ACTGGG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	129
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	141
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	136
BspQI	GCTCTTC	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	137
BssNI	GRCGYC	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	3 cut(s)	18, 23, 167
BstACI	GRCGYC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	40, 49
Cfr10I	RCCGGY	1 cut(s)	137
CviJI	RGCY	1 cut(s)	141
CviKI_1	RGCY	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	123
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	3 cut(s)	18, 23, 167
EarI	CTCTTC	3 cut(s)	18, 23, 167
FspBI	CTAG	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	129
HinfI	GANTC	2 cut(s)	85, 160
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	164
Hpy99I	CGWCG	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	129
LguI	GCTCTTC	1 cut(s)	23
LpnPI	CCDG	2 cut(s)	47, 151
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	129
MboII	GAAGA	4 cut(s)	35, 40, 181, 184
MluCI	AATT	2 cut(s)	100, 177
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	1 cut(s)	88
MseI	TTAA	2 cut(s)	156, 180
MspI	CCGG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	105
NlaIV	GGNNCC	1 cut(s)	136
NmeAIII	GCCGAG	1 cut(s)	69
PciSI	GCTCTTC	1 cut(s)	23
PctI	GAATGC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	160
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	156, 180
SchI	GAGTC	1 cut(s)	79
SetI	ASST	1 cut(s)	132
SgeI	CNNG	7 cut(s)	74, 85, 101, 106, 127, 150, 176
Sse9I	AATT	2 cut(s)	100, 177
SspMI	CTAG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	132
TasI	AATT	2 cut(s)	100, 177
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	2 cut(s)	156, 180
Tru9I	TTAA	2 cut(s)	156, 180
TscAI	CASTG	2 cut(s)	40, 49
TspRI	CASTG	2 cut(s)	40, 49
XbaI	TCTAGA	1 cut(s)	163
XspI	CTAG	1 cut(s)	164
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.