Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007667

Physical Location & Seq

Genomic Coordinates Reverse (-)

39545250 .. 39550834

Gene Structure 5585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0282600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGAAGTTGAAGATCAACAAGGCCTGCGATCTCAGCTCCATCTCCGTCCTTCCTCCTCACAACAGGAGATCAAATTCTGTTTCACATGGACCACAAGGTTCGCAGCTTCAGCTTCGATCTCAACCATCAGAGCAGTCATTTTCTCAGGGACTCTCATCTCAGTATGGCATGTTTTCTCAGCTCTCTCAGACATCTCTTGACGCTTTTACAGATCAGAGGTCTCAAGAACGGGAGAACTCTGTGAAGAAGATTGCTCGCTTACCCCTAATTAGTCATGCCCGTGAAGAGAGTCAAATGCAGATTTCAAGACCTTCCAACAGTCTCACGCGCAAATGGAGTTCTGCTTCTGGTTCAGATCATCGATGTCAGATCAGTGAGGAATTTGAACATCGTATTGGAATGATGGAAACTTCATTAAGCAAGTTTGGGATGATCTTGGATTCTGTCCAGAGTGACGTTATGCAAGTAAAGAAAGGAACAAAAGAAGTTTCAATGGAGATGGAAGCAGTACAGCAGAAGTTGATGGTTCAAGACAGCTTGCTGCAGTTAATGAATAAGGGGCAAGAAGATTTCAAAGCTAGCCTTGATGAGGGCATCAAATTTATGTCGGAGCAACTGAGCAAAAATGAAAATCAAGATAAATTACAGGAGATGTTCTTAGTGCTTTCAGCCTTACCAGAAAAGATTGAAGCATCCCTCCTGAGTTCACAAAATAATTTACACAGCTCCTTCATCAAGGAAATGCAGAAACTGCTTTGCAGTATCCAAACATGCCAGAATCAGATTACGTACCCCATCCAAACATCCAAAGTGCTATCTGTAGTTTCACCAAAGGCACCAAAGGCTGCTGCCATTCCTGCTATTCCACAAGTAGAGCAAAAGCCTAAGAGGACGTATGTGAGAAAGTATGTGAGAAAGCACAAAGCACCCTCTTTACCTTCATCAAAGGGCGCTGCCTGTCACTCTGTTCCAGAAAAAAGGCCACAGCCTATTAAGAAAGAGTTCGAGAGGCTTAAAAACCCTGCTCTCGATTCCCACTCAACTGTACCTCCAAAGGTTTCTGTTCAAGCAGCTGTAGTTACAACAACAGAAACAGGAGGCTGGAAGACTGTAAAGGGGGGAAAAGCTACCTCTATTGATAGGGTGCCCCAGAAAGCACAAAAACATAATGGAATTACCTTGGTTAAACAGGAAAGAGGAGGTAGAATTATCATTGAATCAGATGAGGACATTGATGGAGGATTTTCATTCTTCCTTGACGAGAAAGAAACAGACATGAAAAACTATATGATTGAAGAGGTAGACCAAGAGACAGAACGGATTTTGAGGCGGGCAAGGAGGCGAAAGAGAAGATGCTGTAACCCTATAATTATTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009651 GO:0009743 GO:0009987 GO:0009991 GO:0010033 GO:0010555 GO:0010959 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0032879 GO:0033554 GO:0035556 GO:0036211 GO:0042221 GO:0042592 GO:0042594 GO:0043170 GO:0043266 GO:0043269 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051365 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071496 GO:0071704 GO:0098771 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

459

Amino Acids

51.67

Weight (kDa)

9.47

Isoelectric Point (pI)

60.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01140 AT1G01140 AT1G01140
fragaria_vesca	FvH4_7g17430 FvH4_7g17430 FvH4_7g17430 FvH4_7g17430 FvH4_7g17430
malus_domestica	MD01G1087300.v1.1 MD07G1157500.v1.1
prunus_persica	Prupe.2G195900_v2.0.a1 Prupe.2G195900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360871
rosa_laevigata	RLG00000027776
rosa_multiflora	Rmu_co8111366.1_g000001 Rmu_sc0000677.1_g000045
rosa_roxburghii	Rroxscaffold_4G00295740
rosa_rugosa	Rorug01G0282600 Rorug01G0282700 Rorug01G0282800
rosa_samantha	Rh1BG259300 Rh1DG289300 Rh5DG353600
rosa_wichuraiana	Rw1G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	835, 1144
AccI	GTMKAC	1 cut(s)	1302
AccII	CGCG	1 cut(s)	328
AciI	CCGC	1 cut(s)	1330
AcsI	RAATTY	3 cut(s)	73, 380, 599
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	3 cut(s)	510, 791, 1047
AfiI	CCNNNNNNNGG	1 cut(s)	589
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AluBI	AGCT	9 cut(s)	36, 106, 112, 181, 537, 578, 726, 1073, 1127
AluI	AGCT	9 cut(s)	36, 106, 112, 181, 537, 578, 726, 1073, 1127
Alw26I	GTCTC	3 cut(s)	225, 326, 1304
AlwNI	CAGNNNCTG	1 cut(s)	751
AoxI	GGCC	2 cut(s)	21, 980
ApeKI	GCWGC	6 cut(s)	103, 541, 845, 848, 953, 1070
ApoI	RAATTY	3 cut(s)	73, 380, 599
Asp700I	GAANNNNTTC	1 cut(s)	1001
AspLEI	GCGC	2 cut(s)	330, 953
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	819
AsuNHI	GCTAGC	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	1149
BanI	GGYRCC	2 cut(s)	835, 1144
BbsI	GAAGAC	1 cut(s)	1112
BbvI	GCAGC	6 cut(s)	115, 528, 832, 835, 940, 1082
BccI	CCATC	7 cut(s)	47, 133, 397, 493, 517, 803, 1229
BciVI	GTATCC	1 cut(s)	773
BcoDI	GTCTC	3 cut(s)	225, 326, 1304
BfaI	CTAG	1 cut(s)	579
BfmI	CTRYAG	3 cut(s)	542, 819, 1074
BfoI	RGCGCY	1 cut(s)	954
BfuI	GTATCC	1 cut(s)	773
BisI	GCNGC	6 cut(s)	104, 542, 846, 849, 954, 1071
BlsI	GCNGC	6 cut(s)	105, 543, 847, 850, 955, 1072
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	837, 1146
BmsI	GCATC	3 cut(s)	603, 701, 1343
BmtI	GCTAGC	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	1112
BpuEI	CTTGAG	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	361
BsaAI	YACGTR	1 cut(s)	789
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	1179
BsaXI	ACNNNNNCTCC	2 cut(s)	1033, 1063
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	1179
BseGI	GGATG	4 cut(s)	435, 692, 795, 803
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseMII	CTCAG	7 cut(s)	46, 158, 173, 191, 200, 608, 692
BseRI	GAGGAG	2 cut(s)	45, 1212
BseSI	GKGCMC	1 cut(s)	1149
BseXI	GCAGC	6 cut(s)	115, 528, 832, 835, 940, 1082
Bsh1236I	CGCG	1 cut(s)	328
BshFI	GGCC	2 cut(s)	23, 982
BshNI	GGYRCC	2 cut(s)	835, 1144
BshVI	ATCGAT	1 cut(s)	361
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmAI	GTCTC	3 cut(s)	225, 326, 1304
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	23, 982
Bso31I	GGTCTC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	1149
Bsp143I	GATC	8 cut(s)	12, 28, 68, 116, 211, 355, 369, 432
BspACI	CCGC	1 cut(s)	1330
BspANI	GGCC	2 cut(s)	23, 982
BspCNI	CTCAG	7 cut(s)	45, 157, 172, 190, 199, 609, 693
BspDI	ATCGAT	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	837, 1146
BspMAI	CTGCAG	1 cut(s)	546
BspOI	GCTAGC	1 cut(s)	582
BspT107I	GGYRCC	2 cut(s)	835, 1144
BspTNI	GGTCTC	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	1179
BssMI	GATC	8 cut(s)	12, 28, 68, 116, 211, 355, 369, 432
BssT1I	CCWWGG	1 cut(s)	1179
Bst4CI	ACNGT	3 cut(s)	320, 1045, 1111
Bst6I	CTCTTC	2 cut(s)	279, 1290
BstAPI	GCANNNNNTGC	1 cut(s)	751
BstBAI	YACGTR	1 cut(s)	789
BstC8I	GCNNGC	5 cut(s)	25, 256, 539, 580, 1332
BstDEI	CTNAG	9 cut(s)	32, 144, 159, 177, 186, 617, 658, 701, 885
BstENI	CCTNNNNNAGG	1 cut(s)	587
BstF5I	GGATG	4 cut(s)	435, 692, 795, 803
BstFNI	CGCG	1 cut(s)	328
BstH2I	RGCGCY	1 cut(s)	954
BstHHI	GCGC	2 cut(s)	330, 953
BstKTI	GATC	8 cut(s)	15, 31, 71, 119, 214, 358, 372, 435
BstMAI	GTCTC	3 cut(s)	225, 326, 1304
BstMBI	GATC	8 cut(s)	12, 28, 68, 116, 211, 355, 369, 432
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 109, 751, 842, 857
BstNSI	RCATGY	2 cut(s)	172, 774
BstSFI	CTRYAG	3 cut(s)	542, 819, 1074
BstSLI	GKGCMC	1 cut(s)	1149
BstSNI	TACGTA	1 cut(s)	789
BstUI	CGCG	1 cut(s)	328
BstV1I	GCAGC	6 cut(s)	115, 528, 832, 835, 940, 1082
BstV2I	GAAGAC	1 cut(s)	1112
Bsu15I	ATCGAT	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	773
BsuRI	GGCC	2 cut(s)	23, 982
BsuTUI	ATCGAT	1 cut(s)	361
BtsCI	GGATG	4 cut(s)	435, 692, 795, 803
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	5 cut(s)	25, 256, 539, 580, 1332
CaiI	CAGNNNCTG	1 cut(s)	751
CfoI	GCGC	2 cut(s)	330, 953
Cfr13I	GGNCC	1 cut(s)	89
ClaI	ATCGAT	1 cut(s)	361
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	3 cut(s)	509, 790, 1046
CviAII	CATG	5 cut(s)	86, 169, 275, 771, 1276
CviQI	GTAC	3 cut(s)	509, 790, 1046
DdeI	CTNAG	9 cut(s)	32, 144, 159, 177, 186, 617, 658, 701, 885
DpnI	GATC	8 cut(s)	14, 30, 70, 118, 213, 357, 371, 434
DpnII	GATC	8 cut(s)	12, 28, 68, 116, 211, 355, 369, 432
Eam1104I	CTCTTC	2 cut(s)	279, 1290
EarI	CTCTTC	2 cut(s)	279, 1290
Eco105I	TACGTA	1 cut(s)	789
Eco130I	CCWWGG	1 cut(s)	1179
Eco147I	AGGCCT	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	92
EcoNI	CCTNNNNNAGG	1 cut(s)	587
EcoT14I	CCWWGG	1 cut(s)	1179
ErhI	CCWWGG	1 cut(s)	1179
FaeI	CATG	5 cut(s)	89, 172, 278, 774, 1279
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	5 cut(s)	85, 168, 274, 770, 1275
FauI	CCCGC	1 cut(s)	1323
FblI	GTMKAC	1 cut(s)	1302
Fnu4HI	GCNGC	6 cut(s)	104, 542, 846, 849, 954, 1071
FokI	GGATG	4 cut(s)	442, 679, 782, 790
Fsp4HI	GCNGC	6 cut(s)	104, 542, 846, 849, 954, 1071
FspBI	CTAG	1 cut(s)	579
GlaI	GCGC	2 cut(s)	329, 952
GluI	GCNGC	6 cut(s)	104, 542, 846, 849, 954, 1071
HaeII	RGCGCY	1 cut(s)	954
HaeIII	GGCC	2 cut(s)	23, 982
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	2 cut(s)	330, 953
Hin1II	CATG	5 cut(s)	89, 172, 278, 774, 1279
Hin6I	GCGC	2 cut(s)	328, 951
HinP1I	GCGC	2 cut(s)	328, 951
HinfI	GANTC	6 cut(s)	150, 289, 440, 778, 1031, 1217
HphI	GGTGA	1 cut(s)	819
Hpy166II	GTNNAC	2 cut(s)	707, 1303
Hpy188I	TCNGA	8 cut(s)	130, 189, 216, 355, 369, 610, 783, 1222
Hpy8I	GTNNAC	2 cut(s)	707, 1303
HpyAV	CCTTC	4 cut(s)	59, 321, 739, 948
HpyCH4III	ACNGT	3 cut(s)	320, 1045, 1111
HpyCH4IV	ACGT	3 cut(s)	456, 788, 893
HpyCH4V	TGCA	5 cut(s)	298, 463, 544, 745, 759
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 109, 751, 842, 857
HpyF3I	CTNAG	9 cut(s)	32, 144, 159, 177, 186, 617, 658, 701, 885
HpySE526I	ACGT	3 cut(s)	456, 788, 893
Hsp92II	CATG	5 cut(s)	89, 172, 278, 774, 1279
HspAI	GCGC	2 cut(s)	328, 951
Kzo9I	GATC	8 cut(s)	12, 28, 68, 116, 211, 355, 369, 432
LmnI	GCTCC	3 cut(s)	41, 610, 731
Lsp1109I	GCAGC	6 cut(s)	115, 528, 832, 835, 940, 1082
LweI	GCATC	3 cut(s)	603, 701, 1343
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	3 cut(s)	456, 788, 893
MaeIII	GTNAC	4 cut(s)	452, 959, 1078, 1358
MalI	GATC	8 cut(s)	14, 30, 70, 118, 213, 357, 371, 434
MboI	GATC	8 cut(s)	12, 28, 68, 116, 211, 355, 369, 432
MboII	GAAGA	9 cut(s)	22, 256, 259, 296, 578, 1117, 1243, 1307, 1362
MhlI	GDGCHC	1 cut(s)	1149
MluCI	AATT	9 cut(s)	73, 267, 380, 599, 641, 715, 1173, 1206, 1368
MlyI	GAGTC	2 cut(s)	144, 298
MmeI	TCCRAC	2 cut(s)	339, 588
MroXI	GAANNNNTTC	1 cut(s)	1001
MseI	TTAA	6 cut(s)	416, 548, 993, 1014, 1185, 1374
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	1073
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	5 cut(s)	33, 109, 751, 842, 857
NdeII	GATC	8 cut(s)	12, 28, 68, 116, 211, 355, 369, 432
NheI	GCTAGC	1 cut(s)	578
NlaIII	CATG	5 cut(s)	89, 172, 278, 774, 1279
NlaIV	GGNNCC	2 cut(s)	837, 1146
NmuCI	GTSAC	2 cut(s)	452, 959
NspI	RCATGY	2 cut(s)	172, 774
PceI	AGGCCT	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	1001
PfeI	GAWTC	4 cut(s)	440, 778, 1031, 1217
PkrI	GCNGC	6 cut(s)	105, 543, 847, 850, 955, 1072
PleI	GAGTC	2 cut(s)	144, 297
PpsI	GAGTC	2 cut(s)	144, 297
Ppu21I	YACGTR	1 cut(s)	789
PspN4I	GGNNCC	2 cut(s)	837, 1146
PspPI	GGNCC	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	546
PstNI	CAGNNNCTG	1 cut(s)	751
PvuII	CAGCTG	1 cut(s)	1073
RsaI	GTAC	3 cut(s)	510, 791, 1047
RsaNI	GTAC	3 cut(s)	509, 790, 1046
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	6 cut(s)	416, 548, 993, 1014, 1185, 1374
SatI	GCNGC	6 cut(s)	104, 542, 846, 849, 954, 1071
Sau3AI	GATC	8 cut(s)	12, 28, 68, 116, 211, 355, 369, 432
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	2 cut(s)	144, 298
SduI	GDGCHC	1 cut(s)	1149
SfaNI	GCATC	3 cut(s)	603, 701, 1343
SfcI	CTRYAG	3 cut(s)	542, 819, 1074
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
SnaBI	TACGTA	1 cut(s)	789
Sse9I	AATT	9 cut(s)	73, 267, 380, 599, 641, 715, 1173, 1206, 1368
SseBI	AGGCCT	1 cut(s)	23
SsiI	CCGC	1 cut(s)	1330
SspMI	CTAG	1 cut(s)	579
StuI	AGGCCT	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	1179
TaaI	ACNGT	3 cut(s)	320, 1045, 1111
TaiI	ACGT	3 cut(s)	459, 791, 896
TaqI	TCGA	4 cut(s)	115, 361, 1005, 1029
TasI	AATT	9 cut(s)	73, 267, 380, 599, 641, 715, 1173, 1206, 1368
TatI	WGTACW	1 cut(s)	508
TfiI	GAWTC	4 cut(s)	440, 778, 1031, 1217
Tru1I	TTAA	6 cut(s)	416, 548, 993, 1014, 1185, 1374
Tru9I	TTAA	6 cut(s)	416, 548, 993, 1014, 1185, 1374
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	2 cut(s)	452, 959
TseI	GCWGC	6 cut(s)	103, 541, 845, 848, 953, 1070
Tsp45I	GTSAC	2 cut(s)	452, 959
TspDTI	ATGAA	8 cut(s)	17, 402, 566, 642, 721, 930, 1236, 1292
TspGWI	ACGGA	2 cut(s)	34, 1333
TspRI	CASTG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	89
XagI	CCTNNNNNAGG	1 cut(s)	587
XapI	RAATTY	3 cut(s)	73, 380, 599
XceI	RCATGY	2 cut(s)	172, 774
XmiI	GTMKAC	1 cut(s)	1302
XmnI	GAANNNNTTC	1 cut(s)	1001
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.