Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016923

Physical Location & Seq

Genomic Coordinates Reverse (-)

16249365 .. 16253049

Gene Structure 3685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g19780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAGGTCCGTCCCAATCCCACGGCGGACAACTCGTCGGCGCCGCCGCAGCGTACCCAAAGCAATTCCTCTCAGAAAAAGCCGCCGGCTACTCCCATCCCCGTTGATTCCTCCTCCGTTTCTCAAAGGCTTCAGAAGGAGTTGATGTCTCTAATGATGAGTGGAGGAGAACTTGGTGTATCAGCTTTCCCTGAAGGTGAGAGCATTTTTACATGGATTGGCACAATCGAAGGTGGAAAGGGAACTTTGTACGAGGGTTTATCTTATAAACTGTCTTTGAGATTTCCTATGGACTATCCTTTCAAGCCACCACTAGTCAAGTTTGAGACAATGTGCTTCCATCCAAATGTTGATCAGTTTGGCAACATATGTCTTGACATCCTGCAGGACAAGTGGTCTTCTGCTTATGATTGCAGGACTATTCTTCTGTCCATTCAAAGTCTATTGGGAGAGCCAAACCCAGAGAGTCCCCTTAACAGCTATGCTGCTGCTCTTTTGAGTAACAAGGAAGATTACAGAAAAATGGTCCACAAACAGTACTTTGCTGGAGAATCATTTGAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

189

Amino Acids

20.88

Weight (kDa)

5.24

Isoelectric Point (pI)

59.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	43 - 178	7e-44	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016923)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19780
malus_domestica	MD01G1110400.v1.1 MD07G1176200.v1.1
prunus_persica	Prupe.2G215000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363711
rosa_laevigata	RLG00000027551
rosa_multiflora	Rmu_co8478827.1_g000001 Rmu_sc0000548.1_g000015
rosa_roxburghii	Rroxscaffold_4G00292980
rosa_rugosa	Rorug01G0308600 Rorug01G0308700 Rorug01G0308800
rosa_samantha	Rh1CG297300
rosa_wichuraiana	Rw1G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	40
AciI	CCGC	4 cut(s)	26, 44, 47, 83
AcuI	CTGAAG	2 cut(s)	116, 213
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	3 cut(s)	55, 251, 539
AgsI	TTSAA	2 cut(s)	304, 437
AhdI	GACNNNNNGTC	2 cut(s)	34, 394
AhlI	ACTAGT	1 cut(s)	313
AluBI	AGCT	3 cut(s)	185, 480, 564
AluI	AGCT	3 cut(s)	185, 480, 564
Alw26I	GTCTC	2 cut(s)	153, 320
ApeKI	GCWGC	3 cut(s)	49, 485, 488
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	7, 526
AsuHPI	GGTGA	1 cut(s)	209
AvaII	GGWCC	2 cut(s)	7, 526
BanI	GGYRCC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	61, 472, 475
BccI	CCATC	2 cut(s)	104, 348
BceAI	ACGGC	1 cut(s)	39
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	153, 320
BcuI	ACTAGT	1 cut(s)	313
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	383
BfoI	RGCGCY	1 cut(s)	44
BisI	GCNGC	6 cut(s)	44, 47, 50, 83, 486, 489
BlsI	GCNGC	6 cut(s)	45, 48, 51, 84, 487, 490
BmcAI	AGTACT	1 cut(s)	539
Bme18I	GGWCC	2 cut(s)	7, 526
BmeRI	GACNNNNNGTC	2 cut(s)	34, 394
BmgT120I	GGNCC	2 cut(s)	7, 526
BmiI	GGNNCC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	21
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bse118I	RCCGGY	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	3 cut(s)	96, 340, 378
BseMII	CTCAG	1 cut(s)	86
BseRI	GAGGAG	2 cut(s)	103, 180
BseXI	GCAGC	3 cut(s)	61, 472, 475
BshNI	GGYRCC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	453
BsmAI	GTCTC	2 cut(s)	153, 320
BsmFI	GGGAC	1 cut(s)	453
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	4 cut(s)	26, 44, 47, 83
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	1 cut(s)	352
BssNI	GRCGYC	1 cut(s)	41
Bst4CI	ACNGT	2 cut(s)	273, 537
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	72
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	3 cut(s)	96, 340, 378
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	2 cut(s)	153, 320
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	383
BstV1I	GCAGC	3 cut(s)	61, 472, 475
BstV2I	GAAGAC	1 cut(s)	390
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	96, 340, 378
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	2 cut(s)	7, 526
Csp6I	GTAC	3 cut(s)	54, 250, 538
CviAII	CATG	1 cut(s)	213
CviJI	RGCY	8 cut(s)	82, 89, 130, 185, 307, 454, 480, 564
CviKI_1	RGCY	8 cut(s)	82, 89, 130, 185, 307, 454, 480, 564
CviQI	GTAC	3 cut(s)	54, 250, 538
DdeI	CTNAG	1 cut(s)	72
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
DriI	GACNNNNNGTC	2 cut(s)	34, 394
Eam1105I	GACNNNNNGTC	2 cut(s)	34, 394
EciI	GGCGGA	1 cut(s)	41
Eco47I	GGWCC	2 cut(s)	7, 526
Eco57I	CTGAAG	2 cut(s)	116, 213
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
FaeI	CATG	1 cut(s)	216
FaiI	YATR	7 cut(s)	214, 267, 290, 368, 370, 408, 483
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	1 cut(s)	212
FauNDI	CATATG	1 cut(s)	368
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	6 cut(s)	44, 47, 50, 83, 486, 489
FokI	GGATG	3 cut(s)	83, 327, 365
Fsp4HI	GCNGC	6 cut(s)	44, 47, 50, 83, 486, 489
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	6 cut(s)	44, 47, 50, 83, 486, 489
GsuI	CTGGAG	1 cut(s)	567
HaeII	RGCGCY	1 cut(s)	44
HapII	CCGG	1 cut(s)	86
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	216
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	3 cut(s)	107, 466, 551
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	2 cut(s)	75, 135
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	1 cut(s)	529
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	3 cut(s)	130, 188, 224
HpyCH4III	ACNGT	2 cut(s)	273, 537
HpyCH4V	TGCA	2 cut(s)	385, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	216
HspAI	GCGC	1 cut(s)	41
KasI	GGCGCC	1 cut(s)	40
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	352
LpnPI	CCDG	7 cut(s)	99, 204, 371, 395, 400, 474, 531
Lsp1109I	GCAGC	3 cut(s)	61, 472, 475
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	3 cut(s)	390, 416, 521
MluCI	AATT	1 cut(s)	64
Mly113I	GGCGCC	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	5 cut(s)	79, 121, 124, 158, 247
MroNI	GCCGGC	1 cut(s)	85
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	49
NaeI	GCCGGC	1 cut(s)	87
NarI	GGCGCC	1 cut(s)	41
NdeI	CATATG	1 cut(s)	368
NdeII	GATC	1 cut(s)	352
NgoMIV	GCCGGC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	216
NlaIV	GGNNCC	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	107, 551
PkrI	GCNGC	6 cut(s)	45, 48, 51, 84, 487, 490
PleI	GAGTC	1 cut(s)	474
PluTI	GGCGCC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	474
PsiI	TTATAA	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	7, 526
PstI	CTGCAG	1 cut(s)	387
RsaI	GTAC	3 cut(s)	55, 251, 539
RsaNI	GTAC	3 cut(s)	54, 250, 538
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	6 cut(s)	44, 47, 50, 83, 486, 489
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	2 cut(s)	7, 526
SbfI	CCTGCAGG	1 cut(s)	387
ScaI	AGTACT	1 cut(s)	539
SchI	GAGTC	1 cut(s)	475
SdaI	CCTGCAGG	1 cut(s)	387
SetI	ASST	6 cut(s)	9, 187, 199, 235, 482, 566
SfcI	CTRYAG	1 cut(s)	383
SfoI	GGCGCC	1 cut(s)	42
SinI	GGWCC	2 cut(s)	7, 526
SmiMI	CAYNNNNRTG	1 cut(s)	345
SpeI	ACTAGT	1 cut(s)	313
Sse8387I	CCTGCAGG	1 cut(s)	387
Sse9I	AATT	1 cut(s)	64
SsiI	CCGC	4 cut(s)	26, 44, 47, 83
SspDI	GGCGCC	1 cut(s)	40
SspMI	CTAG	1 cut(s)	314
TaaI	ACNGT	2 cut(s)	273, 537
TaqI	TCGA	1 cut(s)	228
TasI	AATT	1 cut(s)	64
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	3 cut(s)	46, 49, 85
TfiI	GAWTC	2 cut(s)	107, 551
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseI	GCWGC	3 cut(s)	49, 485, 488
TspGWI	ACGGA	1 cut(s)	106
VpaK11BI	GGWCC	2 cut(s)	7, 526
XspI	CTAG	1 cut(s)	314
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.