Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0016923

Physical Location & Seq

Genomic Coordinates Reverse (-)

25547131 .. 25549635

Gene Structure 2505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1176200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAGGTCCGACCCAATCAGACGGCCGACAACTCGTCGGCCACGCACCAGCAGAGTCAGAGCCATACAGCAGCAACTAGTCAGAAAAAGCCTGCTGCTTCTTCCATCCCCGTCGACACCACCTCCGTTTCTCAAAGGCTTCAGAAGGAGTTGATGTCTCTCATGATGAGTGGAGGAGATCTTGGCGTATCGGCTTTTCCTGAAGGCGAGAGCATTTTTGCATGGGTTGGCACAATCGAAGGTGGAAAAGGAACCATGTATGAGGGTTTATCGTACAAGCTTTCTTTGCGTTTTCCTCTGGACTATCCTTTCAAGCCGCCGCAAGTCAAGTTTGAGACAATGTGCTTCCATCCAAATGTTGATCAGTTTGGCAACATATGTCTTGATATCCTGCAGGACAAGTGGTCTTCAGCATACGACTGCAGGACTATACTTCTGTCCATTCAAAGTCTGTTGGGAGAGCCAAACCCGGAGAGTCCCCTCAACAGCTATGCTGCTGCACTGTGGAGTAATAAGGAAGATTACAAAAAAATGGTCCACCGACAGTACTTTGCTGGAGAATCATTGGAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

192

Amino Acids

21.17

Weight (kDa)

5.35

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	46 - 181	6.6e-45	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016923)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19780
malus_domestica	MD01G1110400.v1.1 MD07G1176200.v1.1
prunus_persica	Prupe.2G215000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363711
rosa_laevigata	RLG00000027551
rosa_multiflora	Rmu_co8478827.1_g000001 Rmu_sc0000548.1_g000015
rosa_roxburghii	Rroxscaffold_4G00292980
rosa_rugosa	Rorug01G0308600 Rorug01G0308700 Rorug01G0308800
rosa_samantha	Rh1CG297300
rosa_wichuraiana	Rw1G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	2 cut(s)	317, 320
AcoI	YGGCCR	2 cut(s)	24, 39
AcuI	CTGAAG	3 cut(s)	125, 222, 393
AfaI	GTAC	2 cut(s)	275, 548
AgsI	TTSAA	2 cut(s)	313, 446
AhdI	GACNNNNNGTC	2 cut(s)	34, 403
AhlI	ACTAGT	1 cut(s)	77
AluBI	AGCT	3 cut(s)	280, 489, 573
AluI	AGCT	3 cut(s)	280, 489, 573
Alw26I	GTCTC	2 cut(s)	162, 329
AoxI	GGCC	2 cut(s)	24, 39
ApeKI	GCWGC	4 cut(s)	71, 95, 494, 497
ArsI	GACNNNNNNTTYG	2 cut(s)	519, 551
AspS9I	GGNCC	2 cut(s)	7, 535
AsuC2I	CCSGG	1 cut(s)	470
AvaII	GGWCC	2 cut(s)	7, 535
BbsI	GAAGAC	1 cut(s)	399
BbvI	GCAGC	4 cut(s)	82, 83, 481, 484
BccI	CCATC	2 cut(s)	113, 357
BceAI	ACGGC	1 cut(s)	39
BclI	TGATCA	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	162, 329
BcuI	ACTAGT	1 cut(s)	77
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	2 cut(s)	392, 421
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	6 cut(s)	72, 96, 317, 320, 495, 498
BlsI	GCNGC	6 cut(s)	73, 97, 318, 321, 496, 499
BmcAI	AGTACT	1 cut(s)	548
Bme1390I	CCNGG	1 cut(s)	470
Bme18I	GGWCC	2 cut(s)	7, 535
BmeRI	GACNNNNNGTC	2 cut(s)	34, 403
BmgT120I	GGNCC	2 cut(s)	7, 535
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	470
BpiI	GAAGAC	1 cut(s)	399
BpmI	CTGGAG	1 cut(s)	576
BpuMI	CCSGG	1 cut(s)	470
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 140, 170
BseGI	GGATG	2 cut(s)	105, 349
BseRI	GAGGAG	1 cut(s)	189
BseX3I	CGGCCG	1 cut(s)	24
BseXI	GCAGC	4 cut(s)	82, 83, 481, 484
BsgI	GTGCAG	1 cut(s)	483
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	26, 41
BsiEI	CGRYCG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	462
BsmAI	GTCTC	2 cut(s)	162, 329
BsmFI	GGGAC	1 cut(s)	462
BsnI	GGCC	2 cut(s)	26, 41
Bsp143I	GATC	2 cut(s)	178, 361
BspACI	CCGC	2 cut(s)	317, 320
BspANI	GGCC	2 cut(s)	26, 41
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	253
BspMAI	CTGCAG	2 cut(s)	396, 425
BssMI	GATC	2 cut(s)	178, 361
Bst4CI	ACNGT	2 cut(s)	504, 546
BstC8I	GCNNGC	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	105, 349
BstKTI	GATC	2 cut(s)	181, 364
BstMAI	GTCTC	2 cut(s)	162, 329
BstMBI	GATC	2 cut(s)	178, 361
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	468
BstSFI	CTRYAG	2 cut(s)	392, 421
BstV1I	GCAGC	4 cut(s)	82, 83, 481, 484
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BstZI	CGGCCG	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	26, 41
BtsCI	GGATG	2 cut(s)	105, 349
BtsIMutI	CAGTG	1 cut(s)	500
Cac8I	GCNNGC	1 cut(s)	93
CciI	TCATGA	1 cut(s)	162
Cfr13I	GGNCC	2 cut(s)	7, 535
Csp6I	GTAC	2 cut(s)	274, 547
CviAII	CATG	3 cut(s)	163, 222, 256
CviQI	GTAC	2 cut(s)	274, 547
DpnI	GATC	2 cut(s)	180, 363
DpnII	GATC	2 cut(s)	178, 361
DriI	GACNNNNNGTC	2 cut(s)	34, 403
EaeI	YGGCCR	2 cut(s)	24, 39
EagI	CGGCCG	1 cut(s)	24
Eam1105I	GACNNNNNGTC	2 cut(s)	34, 403
EclXI	CGGCCG	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	2 cut(s)	7, 535
Eco52I	CGGCCG	1 cut(s)	24
Eco57I	CTGAAG	3 cut(s)	125, 222, 393
EcoRV	GATATC	1 cut(s)	388
FaeI	CATG	3 cut(s)	166, 225, 259
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	3 cut(s)	162, 221, 255
FauNDI	CATATG	1 cut(s)	377
FbaI	TGATCA	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	6 cut(s)	72, 96, 317, 320, 495, 498
FokI	GGATG	2 cut(s)	92, 336
Fsp4HI	GCNGC	6 cut(s)	72, 96, 317, 320, 495, 498
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	6 cut(s)	72, 96, 317, 320, 495, 498
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	2 cut(s)	26, 41
HapII	CCGG	1 cut(s)	470
Hin1II	CATG	3 cut(s)	166, 225, 259
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	3 cut(s)	55, 475, 560
HpaII	CCGG	1 cut(s)	470
Hpy166II	GTNNAC	2 cut(s)	115, 538
Hpy188I	TCNGA	5 cut(s)	11, 21, 60, 84, 144
Hpy188III	TCNNGA	4 cut(s)	163, 200, 299, 383
Hpy8I	GTNNAC	2 cut(s)	115, 538
Hpy99I	CGWCG	2 cut(s)	40, 116
HpyAV	CCTTC	3 cut(s)	139, 197, 233
HpyCH4III	ACNGT	2 cut(s)	504, 546
HpyCH4V	TGCA	4 cut(s)	221, 394, 423, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
Hsp92II	CATG	3 cut(s)	166, 225, 259
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	178, 361
LpnPI	CCDG	9 cut(s)	62, 105, 213, 284, 380, 404, 409, 483, 540
Lsp1109I	GCAGC	4 cut(s)	82, 83, 481, 484
MaeI	CTAG	1 cut(s)	78
MalI	GATC	2 cut(s)	180, 363
MboI	GATC	2 cut(s)	178, 361
MboII	GAAGA	3 cut(s)	93, 399, 530
MflI	RGATCY	1 cut(s)	178
MlyI	GAGTC	2 cut(s)	64, 484
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	5 cut(s)	133, 167, 256, 306, 491
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	470
MwoI	GCNNNNNNNGC	1 cut(s)	286
NciI	CCSGG	1 cut(s)	470
NdeI	CATATG	1 cut(s)	377
NdeII	GATC	2 cut(s)	178, 361
NlaIII	CATG	3 cut(s)	166, 225, 259
NlaIV	GGNNCC	1 cut(s)	253
PagI	TCATGA	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	560
PkrI	GCNGC	6 cut(s)	73, 97, 318, 321, 496, 499
PleI	GAGTC	2 cut(s)	63, 483
PpsI	GAGTC	2 cut(s)	63, 483
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	7, 535
PstI	CTGCAG	2 cut(s)	396, 425
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	2 cut(s)	275, 548
RsaNI	GTAC	2 cut(s)	274, 547
RseI	CAYNNNNRTG	1 cut(s)	354
SalI	GTCGAC	1 cut(s)	113
SatI	GCNGC	6 cut(s)	72, 96, 317, 320, 495, 498
Sau3AI	GATC	2 cut(s)	178, 361
Sau96I	GGNCC	2 cut(s)	7, 535
SbfI	CCTGCAGG	1 cut(s)	396
ScaI	AGTACT	1 cut(s)	548
SchI	GAGTC	2 cut(s)	64, 484
ScrFI	CCNGG	1 cut(s)	470
SdaI	CCTGCAGG	1 cut(s)	396
SetI	ASST	6 cut(s)	9, 125, 244, 282, 491, 575
SfcI	CTRYAG	2 cut(s)	392, 421
SinI	GGWCC	2 cut(s)	7, 535
SmiMI	CAYNNNNRTG	1 cut(s)	354
SpeI	ACTAGT	1 cut(s)	77
Sse8387I	CCTGCAGG	1 cut(s)	396
SsiI	CCGC	2 cut(s)	317, 320
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	504, 546
TaqI	TCGA	2 cut(s)	114, 237
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	2 cut(s)	319, 322
TfiI	GAWTC	1 cut(s)	560
TscAI	CASTG	1 cut(s)	507
TseI	GCWGC	4 cut(s)	71, 95, 494, 497
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	1 cut(s)	507
VpaK11BI	GGWCC	2 cut(s)	7, 535
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	78
ZrmI	AGTACT	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.