Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016923

Physical Location & Seq

Genomic Coordinates Reverse (-)

42521879 .. 42524053

Gene Structure 2175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0308600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGACATCTCAGATATCCTCTTTCTCCTTCTCTTCCTATTTCCTCATTTCTATGCACTAGAATTAGACGACTGTCCAGCCTCCATGTGTGGCAACACCGGCTTTCCTATCCGGTTCCCTTTCGGGCTACAAGGCTATCAACCCAAAAACTGTTCTTACCCAGGTTTCGACCTAACCTGCAATACACAGGGCATAACAGTCCTGAGACTTCCAAACTCGGGAGAATTTTTTGTCCGAGCAATCGATTATGTCACACAAGAGATTCAACTCTATGACCCTAGTAGTTGCCTTCCAAAAAGGCTTCTAACCCTCAACCTTTCAGGCTCTCCTTTTGTTGCTGCTTTTTATCAGAACTACACCTTCCTCAGCTGCCCTGCTTCATTCACAGAGTCAAAGTTCACCCCCATTGGTTGCCTCAGTAACTCCACAACCTCAGTCTTGGCCACCCCTTCCATCAGCCTCGCAAATTCAATGTCTGAGGTGTGCAAGATCATCGCTACAATGCCAGTTCCGGTTTCTGGGATAGTTGAGTCTGAGGATGGATTCTCAACCAACTTTGATTCAGACCTTAGTTTGACATGGTATGAGCCTGGTTGTACTCCTTGTGAAAGTGAAGGTGGCATTTGTGGCTTTGAGAGCAACACTAGCCAAGTACTTGGTTGCTTCTACAATTCTAAAGGCAGATCAGGCGACGGTTTCCAAGTTTTCAGGATTATTTGTGTCTCCATCGCGGTACCAGCGCTCACAATGGCGATTGGGATCGCTTGCTTTGCATGCATCAAGGACAGGAGTGGGATCAGTCCTGGTCGCACTGCACAGCGGAACCCCACTGCAGTTGCAGCAGAACCTGAACAACAATCCACAATAGTAATGAATGGTCTGGATCAGACCACCATTGAATCCTATCAAAAGCTAGTTCTTGGTGAAAGCCGGCGGCTTCCAGGACCCAACGACACCACTTGCACTATATGCTTATCAGAGTATCTCACCAAAGACACGGTAAGATGCATCCCAGAGTGTAAACACTGCTTCCATGCTGAATGTGTTGATGAGTGGCTGCGATTGAACAGTACATGTCCAGTTTGTCGAAACTCCCCCTCCCCAGCTCATGTCAACTCAGATGGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

376

Amino Acids

40.91

Weight (kDa)

4.75

Isoelectric Point (pI)

57.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	25 - 92	2e-17	Wall-associated receptor kinase galacturonan-binding
WAK_assoc	PF14380	154 - 225	7.8e-09	Wall-associated receptor kinase C-terminal
zf-RING_2	PF13639	320 - 363	5.5e-13	Ring finger domain
zf-rbx1	PF12678	320 - 363	3.6e-06	RING-H2 zinc finger domain
zf-RING_11	PF17123	321 - 349	1.5e-06	RING-like zinc finger
zf-C3HC4_2	PF13923	321 - 362	6.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016923)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19780
malus_domestica	MD01G1110400.v1.1 MD07G1176200.v1.1
prunus_persica	Prupe.2G215000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363711
rosa_laevigata	RLG00000027551
rosa_multiflora	Rmu_co8478827.1_g000001 Rmu_sc0000548.1_g000015
rosa_roxburghii	Rroxscaffold_4G00292980
rosa_rugosa	Rorug01G0308600 Rorug01G0308700 Rorug01G0308800
rosa_samantha	Rh1CG297300
rosa_wichuraiana	Rw1G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	185
Acc65I	GGTACC	1 cut(s)	733
AccB1I	GGYRCC	1 cut(s)	733
AccII	CGCG	1 cut(s)	731
AciI	CCGC	3 cut(s)	731, 820, 934
AclWI	GGATC	3 cut(s)	767, 803, 891
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	2 cut(s)	224, 466
AfaI	GTAC	4 cut(s)	598, 654, 735, 1072
AfeI	AGCGCT	1 cut(s)	741
AfiI	CCNNNNNNNGG	2 cut(s)	218, 518
AflIII	ACRYGT	1 cut(s)	1073
AgsI	TTSAA	4 cut(s)	266, 471, 899, 1066
AjnI	CCWGG	4 cut(s)	160, 589, 802, 940
AluBI	AGCT	3 cut(s)	369, 913, 1106
AluI	AGCT	3 cut(s)	369, 913, 1106
Alw26I	GTCTC	2 cut(s)	199, 727
AlwI	GGATC	3 cut(s)	767, 803, 891
AlwNI	CAGNNNCTG	1 cut(s)	848
Ama87I	CYCGRG	1 cut(s)	217
Aor51HI	AGCGCT	1 cut(s)	741
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	4 cut(s)	338, 369, 839, 1057
ApoI	RAATTY	2 cut(s)	224, 466
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
Asp718I	GGTACC	1 cut(s)	733
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	1 cut(s)	944
AsuHPI	GGTGA	3 cut(s)	391, 935, 979
AvaI	CYCGRG	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	944
BalI	TGGCCA	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	733
BbvCI	CCTCAGC	1 cut(s)	365
BbvI	GCAGC	4 cut(s)	325, 356, 851, 1044
BccI	CCATC	4 cut(s)	461, 533, 734, 1115
BcgI	CGANNNNNNTGC	2 cut(s)	475, 509
BciT130I	CCWGG	4 cut(s)	162, 591, 804, 942
BcoDI	GTCTC	2 cut(s)	199, 727
BfaI	CTAG	4 cut(s)	59, 279, 645, 914
BfmI	CTRYAG	1 cut(s)	831
BfoI	RGCGCY	1 cut(s)	743
BfuAI	ACCTGC	1 cut(s)	185
BisI	GCNGC	5 cut(s)	339, 370, 840, 935, 1058
BlsI	GCNGC	5 cut(s)	340, 371, 841, 936, 1059
BmcAI	AGTACT	1 cut(s)	654
Bme1390I	CCNGG	4 cut(s)	162, 591, 804, 942
Bme18I	GGWCC	1 cut(s)	944
BmeT110I	CYCGRG	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	944
BmiI	GGNNCC	4 cut(s)	116, 735, 824, 946
BmrFI	CCNGG	4 cut(s)	162, 591, 804, 942
BmsI	GCATC	3 cut(s)	786, 995, 1017
BoxI	GACNNNNGTC	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	365
Bsa29I	ATCGAT	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	758
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	2 cut(s)	111, 511
BsaXI	ACNNNNNCTCC	2 cut(s)	1082, 1112
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 518
Bse118I	RCCGGY	2 cut(s)	98, 930
Bse1I	ACTGG	2 cut(s)	506, 1079
Bse8I	GATNNNNATC	1 cut(s)	758
BseBI	CCWGG	4 cut(s)	162, 591, 804, 942
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	2 cut(s)	544, 1008
BseJI	GATNNNNATC	1 cut(s)	758
BseLI	CCNNNNNNNGG	2 cut(s)	218, 518
BseMII	CTCAG	8 cut(s)	24, 194, 379, 430, 447, 468, 525, 1131
BseNI	ACTGG	2 cut(s)	506, 1079
BseXI	GCAGC	4 cut(s)	325, 356, 851, 1044
BseYI	CCCAGC	1 cut(s)	1102
BsgI	GTGCAG	1 cut(s)	798
Bsh1236I	CGCG	1 cut(s)	731
BshFI	GGCC	1 cut(s)	443
BshNI	GGYRCC	1 cut(s)	733
BshVI	ATCGAT	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	217
BsiSI	CCGG	4 cut(s)	99, 112, 512, 931
BslI	CCNNNNNNNGG	2 cut(s)	218, 518
BsmAI	GTCTC	2 cut(s)	199, 727
BsnI	GGCC	1 cut(s)	443
BsoBI	CYCGRG	1 cut(s)	217
Bsp143I	GATC	5 cut(s)	489, 683, 759, 795, 883
BspACI	CCGC	3 cut(s)	731, 820, 934
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	8 cut(s)	23, 195, 378, 429, 446, 469, 526, 1130
BspDI	ATCGAT	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	731
BspLI	GGNNCC	4 cut(s)	116, 735, 824, 946
BspMAI	CTGCAG	1 cut(s)	835
BspMI	ACCTGC	1 cut(s)	185
BspPI	GGATC	3 cut(s)	767, 803, 891
BspT107I	GGYRCC	1 cut(s)	733
BsrFI	RCCGGY	2 cut(s)	98, 930
BsrI	ACTGG	2 cut(s)	506, 1079
BssAI	RCCGGY	2 cut(s)	98, 930
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	5 cut(s)	489, 683, 759, 795, 883
Bst2UI	CCWGG	4 cut(s)	162, 591, 804, 942
Bst4CI	ACNGT	6 cut(s)	74, 152, 199, 695, 1000, 1070
Bst6I	CTCTTC	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	969
BstC8I	GCNNGC	3 cut(s)	766, 775, 932
BstDEI	CTNAG	9 cut(s)	10, 203, 365, 416, 433, 477, 534, 569, 1117
BstF5I	GGATG	2 cut(s)	544, 1008
BstFNI	CGCG	1 cut(s)	731
BstH2I	RGCGCY	1 cut(s)	743
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	5 cut(s)	492, 686, 762, 798, 886
BstMAI	GTCTC	2 cut(s)	199, 727
BstMBI	GATC	5 cut(s)	489, 683, 759, 795, 883
BstNI	CCWGG	4 cut(s)	162, 591, 804, 942
BstNSI	RCATGY	2 cut(s)	777, 1077
BstPAI	GACNNNNGTC	1 cut(s)	72
BstSCI	CCNGG	4 cut(s)	160, 589, 802, 940
BstSFI	CTRYAG	1 cut(s)	831
BstUI	CGCG	1 cut(s)	731
BstV1I	GCAGC	4 cut(s)	325, 356, 851, 1044
BstXI	CCANNNNNNTGG	1 cut(s)	656
Bsu15I	ATCGAT	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	443
BsuTUI	ATCGAT	1 cut(s)	243
BtgZI	GCGATG	2 cut(s)	478, 712
BtsCI	GGATG	2 cut(s)	544, 1008
BtsI	GCAGTG	3 cut(s)	810, 828, 1024
BtsIMutI	CAGTG	3 cut(s)	810, 828, 1024
BveI	ACCTGC	1 cut(s)	185
Cac8I	GCNNGC	3 cut(s)	766, 775, 932
CaiI	CAGNNNCTG	1 cut(s)	848
CfoI	GCGC	1 cut(s)	742
Cfr10I	RCCGGY	2 cut(s)	98, 930
Cfr13I	GGNCC	1 cut(s)	944
ClaI	ATCGAT	1 cut(s)	243
Csp6I	GTAC	4 cut(s)	597, 653, 734, 1071
CspCI	CAANNNNNGTGG	2 cut(s)	817, 852
CviAII	CATG	6 cut(s)	85, 579, 774, 1034, 1074, 1109
CviQI	GTAC	4 cut(s)	597, 653, 734, 1071
DdeI	CTNAG	9 cut(s)	10, 203, 365, 416, 433, 477, 534, 569, 1117
DpnI	GATC	5 cut(s)	491, 685, 761, 797, 885
DpnII	GATC	5 cut(s)	489, 683, 759, 795, 883
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco32I	GATATC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	944
Eco47III	AGCGCT	1 cut(s)	741
Eco88I	CYCGRG	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	944
EcoRII	CCWGG	4 cut(s)	160, 589, 802, 940
EcoRV	GATATC	1 cut(s)	16
EcoT22I	ATGCAT	2 cut(s)	779, 1010
FaeI	CATG	6 cut(s)	88, 582, 777, 1037, 1077, 1112
FatI	CATG	6 cut(s)	84, 578, 773, 1033, 1073, 1108
Fnu4HI	GCNGC	5 cut(s)	339, 370, 840, 935, 1058
FokI	GGATG	2 cut(s)	551, 995
Fsp4HI	GCNGC	5 cut(s)	339, 370, 840, 935, 1058
FspBI	CTAG	4 cut(s)	59, 279, 645, 914
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	5 cut(s)	339, 370, 840, 935, 1058
GsaI	CCCAGC	1 cut(s)	1106
HaeII	RGCGCY	1 cut(s)	743
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	4 cut(s)	99, 112, 512, 931
HhaI	GCGC	1 cut(s)	742
Hin1II	CATG	6 cut(s)	88, 582, 777, 1037, 1077, 1112
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HincII	GTYRAC	1 cut(s)	1114
HindII	GTYRAC	1 cut(s)	1114
HinfI	GANTC	6 cut(s)	262, 389, 530, 543, 560, 899
HpaII	CCGG	4 cut(s)	99, 112, 512, 931
HphI	GGTGA	3 cut(s)	391, 935, 979
Hpy166II	GTNNAC	3 cut(s)	399, 1022, 1114
Hpy188III	TCNNGA	4 cut(s)	202, 219, 709, 881
Hpy8I	GTNNAC	3 cut(s)	399, 1022, 1114
Hpy99I	CGWCG	1 cut(s)	695
HpyAV	CCTTC	5 cut(s)	38, 299, 370, 459, 608
HpyCH4III	ACNGT	6 cut(s)	74, 152, 199, 695, 1000, 1070
HpyF3I	CTNAG	9 cut(s)	10, 203, 365, 416, 433, 477, 534, 569, 1117
Hsp92II	CATG	6 cut(s)	88, 582, 777, 1037, 1077, 1112
HspAI	GCGC	1 cut(s)	740
KpnI	GGTACC	1 cut(s)	737
KroI	GCCGGC	1 cut(s)	930
KroNI	GCCGGC	1 cut(s)	932
Kzo9I	GATC	5 cut(s)	489, 683, 759, 795, 883
Lsp1109I	GCAGC	4 cut(s)	325, 356, 851, 1044
LweI	GCATC	3 cut(s)	786, 995, 1017
MaeI	CTAG	4 cut(s)	59, 279, 645, 914
MaeIII	GTNAC	2 cut(s)	250, 419
MalI	GATC	5 cut(s)	491, 685, 761, 797, 885
MboI	GATC	5 cut(s)	489, 683, 759, 795, 883
MboII	GAAGA	1 cut(s)	25
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	4 cut(s)	62, 224, 466, 670
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	2 cut(s)	398, 539
Mox20I	TGGCCA	1 cut(s)	443
Mph1103I	ATGCAT	2 cut(s)	779, 1010
MroNI	GCCGGC	1 cut(s)	930
MscI	TGGCCA	1 cut(s)	443
MslI	CAYNNNNRTG	1 cut(s)	51
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	2 cut(s)	369, 820
MspI	CCGG	4 cut(s)	99, 112, 512, 931
MspR9I	CCNGG	4 cut(s)	162, 591, 804, 942
MvaI	CCWGG	4 cut(s)	162, 591, 804, 942
MvnI	CGCG	1 cut(s)	731
NaeI	GCCGGC	1 cut(s)	932
NdeII	GATC	5 cut(s)	489, 683, 759, 795, 883
NgoMIV	GCCGGC	1 cut(s)	930
NlaIII	CATG	6 cut(s)	88, 582, 777, 1037, 1077, 1112
NlaIV	GGNNCC	4 cut(s)	116, 735, 824, 946
NmuCI	GTSAC	1 cut(s)	250
NsiI	ATGCAT	2 cut(s)	779, 1010
NspI	RCATGY	2 cut(s)	777, 1077
PaeI	GCATGC	1 cut(s)	777
PciI	ACATGT	1 cut(s)	1073
PdiI	GCCGGC	1 cut(s)	932
PfeI	GAWTC	4 cut(s)	262, 543, 560, 899
PfoI	TCCNGGA	1 cut(s)	940
PkrI	GCNGC	5 cut(s)	340, 371, 841, 936, 1059
PleI	GAGTC	2 cut(s)	397, 538
PpsI	GAGTC	2 cut(s)	397, 538
PpuMI	RGGWCCY	1 cut(s)	944
PscI	ACATGT	1 cut(s)	1073
PshAI	GACNNNNGTC	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	944
Psp6I	CCWGG	4 cut(s)	160, 589, 802, 940
PspFI	CCCAGC	1 cut(s)	1102
PspGI	CCWGG	4 cut(s)	160, 589, 802, 940
PspN4I	GGNNCC	4 cut(s)	116, 735, 824, 946
PspPI	GGNCC	1 cut(s)	944
PspPPI	RGGWCCY	1 cut(s)	944
PstI	CTGCAG	1 cut(s)	835
PstNI	CAGNNNCTG	1 cut(s)	848
PvuII	CAGCTG	1 cut(s)	369
RsaI	GTAC	4 cut(s)	598, 654, 735, 1072
RsaNI	GTAC	4 cut(s)	597, 653, 734, 1071
RseI	CAYNNNNRTG	1 cut(s)	51
SatI	GCNGC	5 cut(s)	339, 370, 840, 935, 1058
Sau3AI	GATC	5 cut(s)	489, 683, 759, 795, 883
Sau96I	GGNCC	1 cut(s)	944
ScaI	AGTACT	1 cut(s)	654
SchI	GAGTC	2 cut(s)	398, 539
ScrFI	CCNGG	4 cut(s)	162, 591, 804, 942
SfaNI	GCATC	3 cut(s)	786, 995, 1017
SfcI	CTRYAG	1 cut(s)	831
SinI	GGWCC	1 cut(s)	944
SmiMI	CAYNNNNRTG	1 cut(s)	51
SphI	GCATGC	1 cut(s)	777
Sse9I	AATT	4 cut(s)	62, 224, 466, 670
SsiI	CCGC	3 cut(s)	731, 820, 934
SspMI	CTAG	4 cut(s)	59, 279, 645, 914
StyD4I	CCNGG	4 cut(s)	160, 589, 802, 940
TaaI	ACNGT	6 cut(s)	74, 152, 199, 695, 1000, 1070
TaqI	TCGA	3 cut(s)	168, 243, 1087
TasI	AATT	4 cut(s)	62, 224, 466, 670
TatI	WGTACW	3 cut(s)	596, 652, 1070
TauI	GCSGC	1 cut(s)	937
TfiI	GAWTC	4 cut(s)	262, 543, 560, 899
TscAI	CASTG	3 cut(s)	817, 835, 1031
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	4 cut(s)	338, 369, 839, 1057
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	2 cut(s)	369, 887
TspRI	CASTG	3 cut(s)	817, 835, 1031
VpaK11BI	GGWCC	1 cut(s)	944
XapI	RAATTY	2 cut(s)	224, 466
XceI	RCATGY	2 cut(s)	777, 1077
XspI	CTAG	4 cut(s)	59, 279, 645, 914
ZrmI	AGTACT	1 cut(s)	654
Zsp2I	ATGCAT	2 cut(s)	779, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.