Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8478827.1

Orthogroup ID

OG0016923

Physical Location & Seq

Genomic Coordinates Forward (+)

221 .. 1463

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8478827.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgagtggaggagaacttggagtatcggcttttcctgaaggtgagagcatttttgcatggattggcacaattgaaggtggaaaaggaactatgtatgagggtttatcttacaaactgtccttgagatttcctatggattatcctttcaagccaccactagtcaagtttgagacaatgtgcttccatccaaatgttgatcagtttggcaacatatgccttgatattctgcaggacaagtggtcttccgcttatgattgcagaactattcttctgtccattcaaagtctgttgggagagccaaacccagagagtcccctcaacagctatgctgctgctctttggagtaacaaggaagattacagaaaaatggtccagaaacagtacttcgctggagaatcatttgagagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

136

Amino Acids

15.3

Weight (kDa)

4.71

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016923)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19780
malus_domestica	MD01G1110400.v1.1 MD07G1176200.v1.1
prunus_persica	Prupe.2G215000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363711
rosa_laevigata	RLG00000027551
rosa_multiflora	Rmu_co8478827.1_g000001 Rmu_sc0000548.1_g000015
rosa_roxburghii	Rroxscaffold_4G00292980
rosa_rugosa	Rorug01G0308600 Rorug01G0308700 Rorug01G0308800
rosa_samantha	Rh1CG297300
rosa_wichuraiana	Rw1G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	74, 148, 281
AhdI	GACNNNNNGTC	1 cut(s)	238
AhlI	ACTAGT	1 cut(s)	157
AluBI	AGCT	2 cut(s)	324, 408
AluI	AGCT	2 cut(s)	324, 408
Alw26I	GTCTC	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	329, 332
AspS9I	GGNCC	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	316, 319
BccI	CCATC	1 cut(s)	192
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	164
BcuI	ACTAGT	1 cut(s)	157
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	227
BisI	GCNGC	2 cut(s)	330, 333
BlsI	GCNGC	2 cut(s)	331, 334
BmcAI	AGTACT	1 cut(s)	383
Bme18I	GGWCC	1 cut(s)	370
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	142
BseGI	GGATG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	2 cut(s)	316, 319
BslFI	GGGAC	1 cut(s)	297
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	1 cut(s)	246
BspMAI	CTGCAG	1 cut(s)	231
BssMI	GATC	1 cut(s)	196
Bst4CI	ACNGT	2 cut(s)	117, 381
BstAPI	GCANNNNNTGC	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	316, 319
BstV2I	GAAGAC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	1 cut(s)	57
CviJI	RGCY	5 cut(s)	29, 151, 298, 324, 408
CviKI_1	RGCY	5 cut(s)	29, 151, 298, 324, 408
CviQI	GTAC	1 cut(s)	382
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
DriI	GACNNNNNGTC	1 cut(s)	238
Eam1105I	GACNNNNNGTC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	57
FaeI	CATG	1 cut(s)	60
FaiI	YATR	8 cut(s)	58, 92, 96, 134, 212, 214, 252, 327
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	1 cut(s)	56
FauNDI	CATATG	1 cut(s)	212
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	330, 333
FokI	GGATG	1 cut(s)	171
Fsp4HI	GCNGC	2 cut(s)	330, 333
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	2 cut(s)	330, 333
GsuI	CTGGAG	1 cut(s)	411
Hin1II	CATG	1 cut(s)	60
HinfI	GANTC	2 cut(s)	310, 395
HphI	GGTGA	1 cut(s)	53
Hpy188III	TCNNGA	2 cut(s)	35, 373
HpyAV	CCTTC	2 cut(s)	32, 68
HpyCH4III	ACNGT	2 cut(s)	117, 381
HpyCH4V	TGCA	3 cut(s)	56, 229, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	60
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	5 cut(s)	48, 215, 318, 375, 386
Lsp1109I	GCAGC	2 cut(s)	316, 319
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	3 cut(s)	234, 260, 365
MfeI	CAATTG	1 cut(s)	69
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	319
MnlI	CCTC	2 cut(s)	91, 326
MslI	CAYNNNNRTG	1 cut(s)	189
MunI	CAATTG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	213
NdeI	CATATG	1 cut(s)	212
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	2 cut(s)	331, 334
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	231
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	1 cut(s)	189
SatI	GCNGC	2 cut(s)	330, 333
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	370
ScaI	AGTACT	1 cut(s)	383
SchI	GAGTC	1 cut(s)	319
SetI	ASST	4 cut(s)	43, 79, 326, 410
SfcI	CTRYAG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
SpeI	ACTAGT	1 cut(s)	157
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	1 cut(s)	158
TaaI	ACNGT	2 cut(s)	117, 381
TasI	AATT	1 cut(s)	69
TatI	WGTACW	1 cut(s)	381
TfiI	GAWTC	1 cut(s)	395
TseI	GCWGC	2 cut(s)	329, 332
VpaK11BI	GGWCC	1 cut(s)	370
XspI	CTAG	1 cut(s)	158
ZrmI	AGTACT	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.