Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016923

Physical Location & Seq

Genomic Coordinates Reverse (-)

24599486 .. 24602716

Gene Structure 3231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G215000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAGGTCCGCCCGAATCCAACGGCCGACAACTCGTCGGTCGCGCAGCCCCAGCGTCAGCGGCAAACACCCGCAACTACTCAGAAAAAGCCCCCTGCTTCTCCCATCCCCGTCGACACCACCTCCGTTTCACAAAGGCTTCAGAAGGAGTTGATGTCTCTGATGATGAGTGGAGGAGATCTTGGAGTATCGGCTTTTCCTGAAGGTGAGAGCATTTTTACATGGCTTGGCACAATTGAAGGTGGAAAAGGAACTATGTATGAGGGTTTATCCTACAAACTTTCTTTGCGTTTTCCTCTGGACTATCCTTTCAAGCCACCCCAAGTCAAGTTTGAGACAATGTGCTTCCACCCAAATGTTGATCAGTTTGGCAATATATGTCTTGATATTCTGCAGGACAAGTGGTCTTCAGCGTATGATTGCAGGACTATACTTCTGTCCATTCAAAGTCTATTGGGAGAACCAAACCCGGAGAGTCCCCTCAACAGCTATGCTGCTGCTCTGTGGAATAATAAGGAAGATTACAGAAAAATGGTCCACAAACAGTACTTTGCCGGAGAATCACTTGAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

192

Amino Acids

21.37

Weight (kDa)

5.44

Isoelectric Point (pI)

59.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016923)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19780
malus_domestica	MD01G1110400.v1.1 MD07G1176200.v1.1
prunus_persica	Prupe.2G215000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363711
rosa_laevigata	RLG00000027551
rosa_multiflora	Rmu_co8478827.1_g000001 Rmu_sc0000548.1_g000015
rosa_roxburghii	Rroxscaffold_4G00292980
rosa_rugosa	Rorug01G0308600 Rorug01G0308700 Rorug01G0308800
rosa_samantha	Rh1CG297300
rosa_wichuraiana	Rw1G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	44
AciI	CCGC	3 cut(s)	10, 61, 72
AcoI	YGGCCR	1 cut(s)	24
AcuI	CTGAAG	3 cut(s)	125, 222, 393
AfaI	GTAC	1 cut(s)	548
AgsI	TTSAA	3 cut(s)	239, 313, 446
AhdI	GACNNNNNGTC	2 cut(s)	34, 403
AluBI	AGCT	1 cut(s)	489
AluI	AGCT	1 cut(s)	489
Alw26I	GTCTC	2 cut(s)	162, 329
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	3 cut(s)	46, 494, 497
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	7, 535
AsuC2I	CCSGG	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	218
AvaII	GGWCC	2 cut(s)	7, 535
BbsI	GAAGAC	1 cut(s)	399
BbvI	GCAGC	3 cut(s)	58, 481, 484
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	39
BclI	TGATCA	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	162, 329
BfmI	CTRYAG	1 cut(s)	392
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	4 cut(s)	47, 62, 495, 498
BlsI	GCNGC	4 cut(s)	48, 63, 496, 499
BmcAI	AGTACT	1 cut(s)	548
Bme1390I	CCNGG	1 cut(s)	470
Bme18I	GGWCC	2 cut(s)	7, 535
BmeRI	GACNNNNNGTC	2 cut(s)	34, 403
BmgT120I	GGNCC	2 cut(s)	7, 535
BmrFI	CCNGG	1 cut(s)	470
BpiI	GAAGAC	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	470
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 140, 170
BseGI	GGATG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	189
BseX3I	CGGCCG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	58, 481, 484
BseYI	CCCAGC	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	44
Bsh1285I	CGRYCG	2 cut(s)	27, 42
BshFI	GGCC	1 cut(s)	26
BsiEI	CGRYCG	2 cut(s)	27, 42
BsiSI	CCGG	2 cut(s)	470, 555
BslFI	GGGAC	1 cut(s)	462
BsmAI	GTCTC	2 cut(s)	162, 329
BsmFI	GGGAC	1 cut(s)	462
BsnI	GGCC	1 cut(s)	26
Bsp143I	GATC	2 cut(s)	178, 361
BspACI	CCGC	3 cut(s)	10, 61, 72
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	44
BspMAI	CTGCAG	1 cut(s)	396
BssMI	GATC	2 cut(s)	178, 361
Bst4CI	ACNGT	1 cut(s)	546
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	2 cut(s)	181, 364
BstMAI	GTCTC	2 cut(s)	162, 329
BstMBI	GATC	2 cut(s)	178, 361
BstMCI	CGRYCG	2 cut(s)	27, 42
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 61
BstSCI	CCNGG	1 cut(s)	468
BstSFI	CTRYAG	1 cut(s)	392
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	3 cut(s)	58, 481, 484
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BstZI	CGGCCG	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	105
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	7, 535
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	1 cut(s)	222
CviJI	RGCY	8 cut(s)	26, 49, 91, 139, 194, 226, 316, 489
CviKI_1	RGCY	8 cut(s)	26, 49, 91, 139, 194, 226, 316, 489
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	2 cut(s)	180, 363
DpnII	GATC	2 cut(s)	178, 361
DriI	GACNNNNNGTC	2 cut(s)	34, 403
EaeI	YGGCCR	1 cut(s)	24
EagI	CGGCCG	1 cut(s)	24
Eam1105I	GACNNNNNGTC	2 cut(s)	34, 403
EclXI	CGGCCG	1 cut(s)	24
Eco47I	GGWCC	2 cut(s)	7, 535
Eco52I	CGGCCG	1 cut(s)	24
Eco57I	CTGAAG	3 cut(s)	125, 222, 393
FaeI	CATG	1 cut(s)	225
FaiI	YATR	8 cut(s)	223, 257, 261, 377, 379, 417, 431, 492
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	1 cut(s)	221
FauI	CCCGC	1 cut(s)	79
FbaI	TGATCA	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	47, 62, 495, 498
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	4 cut(s)	47, 62, 495, 498
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	4 cut(s)	47, 62, 495, 498
GsaI	CCCAGC	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	2 cut(s)	470, 555
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	225
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	3 cut(s)	16, 475, 560
HpaII	CCGG	2 cut(s)	470, 555
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	115, 538
Hpy188I	TCNGA	3 cut(s)	84, 144, 162
Hpy188III	TCNNGA	3 cut(s)	200, 299, 383
Hpy8I	GTNNAC	2 cut(s)	115, 538
Hpy99I	CGWCG	2 cut(s)	40, 116
HpyAV	CCTTC	3 cut(s)	139, 197, 233
HpyCH4III	ACNGT	1 cut(s)	546
HpyCH4V	TGCA	2 cut(s)	394, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 61
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	225
HspAI	GCGC	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	178, 361
LpnPI	CCDG	8 cut(s)	65, 108, 213, 284, 380, 409, 483, 568
Lsp1109I	GCAGC	3 cut(s)	58, 481, 484
MalI	GATC	2 cut(s)	180, 363
MboI	GATC	2 cut(s)	178, 361
MboII	GAAGA	2 cut(s)	399, 530
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	5 cut(s)	133, 167, 256, 306, 491
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	2 cut(s)	470, 555
MspR9I	CCNGG	1 cut(s)	470
MunI	CAATTG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	52, 61
NciI	CCSGG	1 cut(s)	470
NdeII	GATC	2 cut(s)	178, 361
NlaIII	CATG	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	16, 560
PkrI	GCNGC	4 cut(s)	48, 63, 496, 499
PleI	GAGTC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	483
PspFI	CCCAGC	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	7, 535
PstI	CTGCAG	1 cut(s)	396
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	1 cut(s)	354
SalI	GTCGAC	1 cut(s)	113
SatI	GCNGC	4 cut(s)	47, 62, 495, 498
Sau3AI	GATC	2 cut(s)	178, 361
Sau96I	GGNCC	2 cut(s)	7, 535
ScaI	AGTACT	1 cut(s)	548
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	1 cut(s)	470
SetI	ASST	5 cut(s)	9, 125, 208, 244, 491
SfcI	CTRYAG	1 cut(s)	392
SinI	GGWCC	2 cut(s)	7, 535
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	3 cut(s)	10, 61, 72
StyD4I	CCNGG	1 cut(s)	468
TaaI	ACNGT	1 cut(s)	546
TaqI	TCGA	1 cut(s)	114
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	1 cut(s)	234
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	2 cut(s)	16, 560
TseI	GCWGC	3 cut(s)	46, 494, 497
TspGWI	ACGGA	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	7, 535
XmiI	GTMKAC	1 cut(s)	114
ZrmI	AGTACT	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.