Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016923

Physical Location & Seq

Genomic Coordinates Reverse (-)

42524907 .. 42527999

Gene Structure 3093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0308700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCCGAAGCGAAAGCAGCGAACCGGAGCCGTTCAGCCTCTGAAGACGCAGAAGCGTATGCGAAGAGCCAAGCCGATTTGCTCTTGCACCTCTCCTCGATTCACTTCTTCTGGCCCCGCCTTCACCTGTTACGAGCAGGACGTTTGGACGGAGATCGCAAAGTTTCTGGACGGAAAGTCACTGGTGATGCTCGCTGCGACATGTCGTTGGTTCCACGCGCTGGTCGAGGACGGGAGCATATGGAGGTACTTGTGCTTGCGTGATCTTCAGGTCCCTGCTCCTCGCCACCCGGCGGCGTTTGATTGGAAGAAGCTCTACATTTCCGCTTTCAATGGGAGTCATTCTTACATGTTCCGCCAGCCGGAGAAGCATATAGACTGGATGCGGATCGGTGCATTTTTCCTGGAATCTTCTTCAGTACTCCTAACAGAAAGGCTGAGCACCCCACCGAAATTCCCCAAGGAAGATAGCATTCAGAAAATGTTGGAGACGAGCGGCAGTTGTGTGTTGAACAATATTGTGAAACCTGGGATATGGATTGCAGATCTCCAGCTTGTTCGATGCCCTGTCTGCGAGCTCAATACTTGTGATGGAACAATGCAAACATTGGATGCAAGGCATATTGAACTGTTCTTGAGTGAGGGATACCAGGATGGTAGCTGGGAATATGAACTTATTGGAATTCAGGATGTCAAAAAGCATGTTGAGGGTGCTTCTGGAGCTATTTTCGATGTCAAACACCTCAAAGACTCTTCAACTTCAGTCTTCAACCTCAAGTCATGGGTCGGGAAACCGAATGACTGGCAACCCAAGGCTGTGATCACAATGCATGCAGTTGCTGTCAACACAAATCTGCAGAGAAATGAAGGCCTGCAAGTCAAATACCATGTGATGAGAGCTGGAGCTGGAGGAGAAGTTGTATCTATTCGAATCTCGCAGCAGCTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

316

Amino Acids

35.79

Weight (kDa)

9.08

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	47 - 87	1.3e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016923)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19780
malus_domestica	MD01G1110400.v1.1 MD07G1176200.v1.1
prunus_persica	Prupe.2G215000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363711
rosa_laevigata	RLG00000027551
rosa_multiflora	Rmu_co8478827.1_g000001 Rmu_sc0000548.1_g000015
rosa_roxburghii	Rroxscaffold_4G00292980
rosa_rugosa	Rorug01G0308600 Rorug01G0308700 Rorug01G0308800
rosa_samantha	Rh1CG297300
rosa_wichuraiana	Rw1G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	220
AccBSI	CCGCTC	1 cut(s)	495
AccII	CGCG	1 cut(s)	218
AciI	CCGC	6 cut(s)	117, 293, 324, 355, 385, 495
AclWI	GGATC	1 cut(s)	395
AcsI	RAATTY	2 cut(s)	452, 681
AcuI	CTGAAG	4 cut(s)	62, 251, 399, 744
AfaI	GTAC	2 cut(s)	248, 420
AfiI	CCNNNNNNNGG	3 cut(s)	220, 292, 361
AflIII	ACRYGT	2 cut(s)	200, 348
AgsI	TTSAA	5 cut(s)	331, 511, 626, 756, 769
AhdI	GACNNNNNGTC	1 cut(s)	175
AjnI	CCWGG	3 cut(s)	402, 526, 648
AluBI	AGCT	8 cut(s)	313, 553, 577, 660, 722, 899, 905, 943
AluI	AGCT	8 cut(s)	313, 553, 577, 660, 722, 899, 905, 943
Alw21I	GWGCWC	2 cut(s)	443, 579
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	395
AlwNI	CAGNNNCTG	3 cut(s)	40, 839, 946
AoxI	GGCC	2 cut(s)	112, 868
ApeKI	GCWGC	4 cut(s)	16, 194, 937, 940
ApoI	RAATTY	2 cut(s)	452, 681
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	113, 271
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	115, 196
AsuII	TTCGAA	1 cut(s)	928
AvaII	GGWCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	579
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
BbsI	GAAGAC	2 cut(s)	50, 757
Bbv12I	GWGCWC	2 cut(s)	443, 579
BbvI	GCAGC	2 cut(s)	28, 181
BccI	CCATC	2 cut(s)	584, 647
BceAI	ACGGC	1 cut(s)	14
BciT130I	CCWGG	3 cut(s)	404, 528, 650
BciVI	GTATCC	1 cut(s)	638
BclI	TGATCA	1 cut(s)	819
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	482
BfmI	CTRYAG	2 cut(s)	854, 947
BfuI	GTATCC	1 cut(s)	638
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	6 cut(s)	17, 195, 294, 496, 938, 941
BlpI	GCTNAGC	1 cut(s)	437
BlsI	GCNGC	6 cut(s)	18, 196, 295, 497, 939, 942
BmcAI	AGTACT	1 cut(s)	420
Bme1390I	CCNGG	4 cut(s)	290, 404, 528, 650
Bme18I	GGWCC	1 cut(s)	271
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	113, 271
BmiI	GGNNCC	4 cut(s)	28, 115, 212, 273
BmrFI	CCNGG	4 cut(s)	290, 404, 528, 650
BmsI	GCATC	4 cut(s)	177, 372, 551, 601
BpiI	GAAGAC	2 cut(s)	50, 757
BpmI	CTGGAG	4 cut(s)	533, 738, 921, 927
Bpu1102I	GCTNAGC	1 cut(s)	437
Bpu14I	TTCGAA	1 cut(s)	928
BpuEI	CTTGAG	2 cut(s)	655, 758
BpuMI	CCSGG	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	386
BsaJI	CCNNGG	3 cut(s)	459, 527, 810
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	4 cut(s)	900, 903, 930, 933
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 292, 361
Bse1I	ACTGG	3 cut(s)	186, 383, 806
Bse8I	GATNNNNATC	1 cut(s)	386
BseBI	CCWGG	3 cut(s)	404, 528, 650
BseDI	CCNNGG	3 cut(s)	459, 527, 810
BseGI	GGATG	4 cut(s)	387, 616, 658, 694
BseJI	GATNNNNATC	1 cut(s)	386
BseLI	CCNNNNNNNGG	3 cut(s)	220, 292, 361
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	3 cut(s)	186, 383, 806
BseRI	GAGGAG	3 cut(s)	84, 270, 924
BseXI	GCAGC	2 cut(s)	28, 181
BseYI	CCCAGC	1 cut(s)	660
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	2 cut(s)	114, 870
BsiHKAI	GWGCWC	2 cut(s)	443, 579
BsiSI	CCGG	3 cut(s)	24, 290, 362
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	3 cut(s)	220, 292, 361
BsmAI	GTCTC	1 cut(s)	482
BsmBI	CGTCTC	1 cut(s)	482
BsmFI	GGGAC	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	2 cut(s)	114, 870
Bsp119I	TTCGAA	1 cut(s)	928
Bsp1286I	GDGCHC	2 cut(s)	443, 579
Bsp143I	GATC	5 cut(s)	153, 262, 387, 544, 819
Bsp1720I	GCTNAGC	1 cut(s)	437
BspACI	CCGC	6 cut(s)	117, 293, 324, 355, 385, 495
BspANI	GGCC	2 cut(s)	114, 870
BspCNI	CTCAG	1 cut(s)	429
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	4 cut(s)	28, 115, 212, 273
BspMAI	CTGCAG	1 cut(s)	858
BspPI	GGATC	1 cut(s)	395
BspQI	GCTCTTC	1 cut(s)	58
BspT104I	TTCGAA	1 cut(s)	928
BsrBI	CCGCTC	1 cut(s)	495
BsrI	ACTGG	3 cut(s)	186, 383, 806
BssECI	CCNNGG	3 cut(s)	459, 527, 810
BssMI	GATC	5 cut(s)	153, 262, 387, 544, 819
BssT1I	CCWWGG	2 cut(s)	459, 810
Bst2UI	CCWGG	3 cut(s)	404, 528, 650
Bst4CI	ACNGT	1 cut(s)	630
Bst6I	CTCTTC	2 cut(s)	58, 757
BstBI	TTCGAA	1 cut(s)	928
BstC8I	GCNNGC	6 cut(s)	192, 257, 359, 575, 831, 872
BstDEI	CTNAG	1 cut(s)	437
BstF5I	GGATG	4 cut(s)	387, 616, 658, 694
BstFNI	CGCG	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	5 cut(s)	156, 265, 390, 547, 822
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	5 cut(s)	153, 262, 387, 544, 819
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 367, 570, 719
BstNI	CCWGG	3 cut(s)	404, 528, 650
BstNSI	RCATGY	4 cut(s)	204, 352, 704, 833
BstSCI	CCNGG	4 cut(s)	288, 402, 526, 648
BstSFI	CTRYAG	2 cut(s)	854, 947
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	28, 181
BstV2I	GAAGAC	2 cut(s)	50, 757
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuI	GTATCC	1 cut(s)	638
BsuRI	GGCC	2 cut(s)	114, 870
BtsCI	GGATG	4 cut(s)	387, 616, 658, 694
BtsIMutI	CAGTG	1 cut(s)	179
Cac8I	GCNNGC	6 cut(s)	192, 257, 359, 575, 831, 872
CaiI	CAGNNNCTG	3 cut(s)	40, 839, 946
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	113, 271
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	247, 419
CviAII	CATG	6 cut(s)	201, 349, 701, 780, 830, 887
CviQI	GTAC	2 cut(s)	247, 419
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	5 cut(s)	155, 264, 389, 546, 821
DpnII	GATC	5 cut(s)	153, 262, 387, 544, 819
DriI	GACNNNNNGTC	1 cut(s)	175
Eam1104I	CTCTTC	2 cut(s)	58, 757
Eam1105I	GACNNNNNGTC	1 cut(s)	175
EarI	CTCTTC	2 cut(s)	58, 757
EciI	GGCGGA	1 cut(s)	344
Ecl136II	GAGCTC	1 cut(s)	577
Eco130I	CCWWGG	2 cut(s)	459, 810
Eco147I	AGGCCT	1 cut(s)	870
Eco24I	GRGCYC	1 cut(s)	579
Eco47I	GGWCC	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	577
Eco57I	CTGAAG	4 cut(s)	62, 251, 399, 744
EcoICRI	GAGCTC	1 cut(s)	577
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	681
EcoRII	CCWGG	3 cut(s)	402, 526, 648
EcoT14I	CCWWGG	2 cut(s)	459, 810
EcoT22I	ATGCAT	1 cut(s)	831
EcoT38I	GRGCYC	1 cut(s)	579
ErhI	CCWWGG	2 cut(s)	459, 810
Esp3I	CGTCTC	1 cut(s)	482
FaeI	CATG	6 cut(s)	204, 352, 704, 783, 833, 890
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	6 cut(s)	200, 348, 700, 779, 829, 886
FauI	CCCGC	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	239
FbaI	TGATCA	1 cut(s)	819
Fnu4HI	GCNGC	6 cut(s)	17, 195, 294, 496, 938, 941
FokI	GGATG	4 cut(s)	394, 623, 665, 701
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	6 cut(s)	17, 195, 294, 496, 938, 941
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	6 cut(s)	17, 195, 294, 496, 938, 941
GsaI	CCCAGC	1 cut(s)	664
GsuI	CTGGAG	4 cut(s)	533, 738, 921, 927
HaeIII	GGCC	2 cut(s)	114, 870
HapII	CCGG	3 cut(s)	24, 290, 362
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	6 cut(s)	204, 352, 704, 783, 833, 890
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	844
HindII	GTYRAC	1 cut(s)	844
HinfI	GANTC	5 cut(s)	99, 337, 407, 749, 930
HpaII	CCGG	3 cut(s)	24, 290, 362
HphI	GGTGA	2 cut(s)	115, 196
Hpy166II	GTNNAC	1 cut(s)	844
Hpy188I	TCNGA	2 cut(s)	42, 477
Hpy188III	TCNNGA	5 cut(s)	167, 634, 686, 717, 787
Hpy8I	GTNNAC	1 cut(s)	844
HpyAV	CCTTC	2 cut(s)	130, 860
HpyCH4III	ACNGT	1 cut(s)	630
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	9 cut(s)	87, 395, 542, 601, 614, 829, 833, 856, 874
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 367, 570, 719
HpyF3I	CTNAG	1 cut(s)	437
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	6 cut(s)	204, 352, 704, 783, 833, 890
HspAI	GCGC	1 cut(s)	218
Ksp22I	TGATCA	1 cut(s)	819
Kzo9I	GATC	5 cut(s)	153, 262, 387, 544, 819
LguI	GCTCTTC	1 cut(s)	58
LmnI	GCTCC	5 cut(s)	26, 234, 283, 719, 902
Lsp1109I	GCAGC	2 cut(s)	28, 181
LweI	GCATC	4 cut(s)	177, 372, 551, 601
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	128, 177
MalI	GATC	5 cut(s)	155, 264, 389, 546, 821
MbiI	CCGCTC	1 cut(s)	495
MboI	GATC	5 cut(s)	153, 262, 387, 544, 819
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	2 cut(s)	443, 579
MluCI	AATT	2 cut(s)	452, 681
MlyI	GAGTC	2 cut(s)	346, 743
MmeI	TCCRAC	1 cut(s)	465
Mph1103I	ATGCAT	1 cut(s)	831
MspI	CCGG	3 cut(s)	24, 290, 362
MspR9I	CCNGG	4 cut(s)	290, 404, 528, 650
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	3 cut(s)	404, 528, 650
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	4 cut(s)	16, 367, 570, 719
NciI	CCSGG	1 cut(s)	290
NdeI	CATATG	1 cut(s)	239
NdeII	GATC	5 cut(s)	153, 262, 387, 544, 819
NlaIII	CATG	6 cut(s)	204, 352, 704, 783, 833, 890
NlaIV	GGNNCC	4 cut(s)	28, 115, 212, 273
NmuCI	GTSAC	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	831
NspI	RCATGY	4 cut(s)	204, 352, 704, 833
NspV	TTCGAA	1 cut(s)	928
PaeI	GCATGC	1 cut(s)	833
PceI	AGGCCT	1 cut(s)	870
PciI	ACATGT	2 cut(s)	200, 348
PciSI	GCTCTTC	1 cut(s)	58
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 222
PctI	GAATGC	1 cut(s)	471
PfeI	GAWTC	3 cut(s)	99, 407, 930
PflMI	CCANNNNNTGG	1 cut(s)	220
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	6 cut(s)	18, 196, 295, 497, 939, 942
PleI	GAGTC	2 cut(s)	345, 743
PpsI	GAGTC	2 cut(s)	345, 743
PpuMI	RGGWCCY	1 cut(s)	271
PscI	ACATGT	2 cut(s)	200, 348
Psp124BI	GAGCTC	1 cut(s)	579
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	3 cut(s)	402, 526, 648
PspFI	CCCAGC	1 cut(s)	660
PspGI	CCWGG	3 cut(s)	402, 526, 648
PspN4I	GGNNCC	4 cut(s)	28, 115, 212, 273
PspPI	GGNCC	2 cut(s)	113, 271
PspPPI	RGGWCCY	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	858
PstNI	CAGNNNCTG	3 cut(s)	40, 839, 946
PsuI	RGATCY	1 cut(s)	544
RsaI	GTAC	2 cut(s)	248, 420
RsaNI	GTAC	2 cut(s)	247, 419
SacI	GAGCTC	1 cut(s)	579
SapI	GCTCTTC	1 cut(s)	58
SatI	GCNGC	6 cut(s)	17, 195, 294, 496, 938, 941
Sau3AI	GATC	5 cut(s)	153, 262, 387, 544, 819
Sau96I	GGNCC	2 cut(s)	113, 271
ScaI	AGTACT	1 cut(s)	420
SchI	GAGTC	2 cut(s)	346, 743
ScrFI	CCNGG	4 cut(s)	290, 404, 528, 650
SduI	GDGCHC	2 cut(s)	443, 579
SfaNI	GCATC	4 cut(s)	177, 372, 551, 601
SfcI	CTRYAG	2 cut(s)	854, 947
SfuI	TTCGAA	1 cut(s)	928
SinI	GGWCC	1 cut(s)	271
SmlI	CTYRAG	2 cut(s)	634, 773
SmoI	CTYRAG	2 cut(s)	634, 773
SphI	GCATGC	1 cut(s)	833
Sse9I	AATT	2 cut(s)	452, 681
SseBI	AGGCCT	1 cut(s)	870
SsiI	CCGC	6 cut(s)	117, 293, 324, 355, 385, 495
SspI	AATATT	1 cut(s)	517
SstI	GAGCTC	1 cut(s)	579
StuI	AGGCCT	1 cut(s)	870
StyD4I	CCNGG	4 cut(s)	288, 402, 526, 648
StyI	CCWWGG	2 cut(s)	459, 810
TaaI	ACNGT	1 cut(s)	630
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	5 cut(s)	97, 225, 559, 729, 928
TasI	AATT	2 cut(s)	452, 681
TatI	WGTACW	1 cut(s)	418
TauI	GCSGC	2 cut(s)	296, 498
TfiI	GAWTC	3 cut(s)	99, 407, 930
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	4 cut(s)	16, 194, 937, 940
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	2 cut(s)	684, 879
TspGWI	ACGGA	2 cut(s)	164, 186
TspRI	CASTG	1 cut(s)	186
Van91I	CCANNNNNTGG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	2 cut(s)	452, 681
XceI	RCATGY	4 cut(s)	204, 352, 704, 833
ZrmI	AGTACT	1 cut(s)	420
Zsp2I	ATGCAT	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.