Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000548.1

Orthogroup ID

OG0016923

Physical Location & Seq

Genomic Coordinates Reverse (-)

74754 .. 77713

Gene Structure 2960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000548.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggaggtccgtcccaatcagacgacggacaactcgtcggggccgccgcagcgtagccagcgcaatacctctcagaaaaagccgctggcttctccaattccggtcgactcctcctccgtttctcaaaggcttcagaaggagttgatgtctctaatgatgagtggaggagaacttggagtatcggcttttcctgaaggtgagagcatttttgcatggattggcacaattgaaggtggaaaaggaactatgtatgagggtttatcttacaaactgtccttgagatttcctatggattatcctttcaagccaccactagtcaagtttgagacaatgtgcttccatccaaatgttgatcagtttggcaacatatgccttgatattctgcaggacaagtggtcttccgcttatgattgcagaactattcttctgtccattcaaagtctgttgggagagccaaacccagagagtcccctcaacagctatgctgctgctctttggagtaacaaggaagattacagaaaaatggtccagaaacagtacttcgctggagaatcatttgagagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0010564 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030071 GO:0030163 GO:0031145 GO:0031625 GO:0032446 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051128 GO:0051603 GO:0051726 GO:0051783 GO:0051983 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901990 GO:1902099 GO:1905818

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

188

Amino Acids

21.05

Weight (kDa)

5.27

Isoelectric Point (pI)

61.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016923)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19780
malus_domestica	MD01G1110400.v1.1 MD07G1176200.v1.1
prunus_persica	Prupe.2G215000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363711
rosa_laevigata	RLG00000027551
rosa_multiflora	Rmu_co8478827.1_g000001 Rmu_sc0000548.1_g000015
rosa_roxburghii	Rroxscaffold_4G00292980
rosa_rugosa	Rorug01G0308600 Rorug01G0308700 Rorug01G0308800
rosa_samantha	Rh1CG297300
rosa_wichuraiana	Rw1G028170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	4 cut(s)	44, 47, 83, 402
AcuI	CTGAAG	2 cut(s)	116, 213
AfaI	GTAC	1 cut(s)	539
AgsI	TTSAA	3 cut(s)	230, 304, 437
AhdI	GACNNNNNGTC	2 cut(s)	34, 394
AhlI	ACTAGT	1 cut(s)	313
AluBI	AGCT	2 cut(s)	480, 564
AluI	AGCT	2 cut(s)	480, 564
Alw26I	GTCTC	2 cut(s)	153, 320
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	3 cut(s)	49, 485, 488
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	3 cut(s)	7, 41, 526
AsuHPI	GGTGA	1 cut(s)	209
AvaII	GGWCC	2 cut(s)	7, 526
BbsI	GAAGAC	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	61, 472, 475
BccI	CCATC	1 cut(s)	348
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	153, 320
BcuI	ACTAGT	1 cut(s)	313
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	383
BisI	GCNGC	6 cut(s)	44, 47, 50, 83, 486, 489
BlsI	GCNGC	6 cut(s)	45, 48, 51, 84, 487, 490
BmcAI	AGTACT	1 cut(s)	539
Bme18I	GGWCC	2 cut(s)	7, 526
BmeRI	GACNNNNNGTC	2 cut(s)	34, 394
BmgT120I	GGNCC	3 cut(s)	7, 41, 526
BmiI	GGNNCC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	298
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 131, 161
BseGI	GGATG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	86
BseRI	GAGGAG	3 cut(s)	100, 103, 180
BseXI	GCAGC	3 cut(s)	61, 472, 475
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	453
BsmAI	GTCTC	2 cut(s)	153, 320
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	4 cut(s)	44, 47, 83, 402
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	387
BssMI	GATC	1 cut(s)	352
Bst4CI	ACNGT	2 cut(s)	273, 537
BstAPI	GCANNNNNTGC	1 cut(s)	369
BstC8I	GCNNGC	2 cut(s)	59, 87
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	2 cut(s)	153, 320
BstMBI	GATC	1 cut(s)	352
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 58, 369
BstSFI	CTRYAG	1 cut(s)	383
BstV1I	GCAGC	3 cut(s)	61, 472, 475
BstV2I	GAAGAC	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	59, 87
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	3 cut(s)	7, 41, 526
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	1 cut(s)	213
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
DriI	GACNNNNNGTC	2 cut(s)	34, 394
Eam1105I	GACNNNNNGTC	2 cut(s)	34, 394
Eco47I	GGWCC	2 cut(s)	7, 526
Eco57I	CTGAAG	2 cut(s)	116, 213
FaeI	CATG	1 cut(s)	216
FaiI	YATR	8 cut(s)	214, 248, 252, 290, 368, 370, 408, 483
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	1 cut(s)	212
FauNDI	CATATG	1 cut(s)	368
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	6 cut(s)	44, 47, 50, 83, 486, 489
FokI	GGATG	1 cut(s)	327
Fsp4HI	GCNGC	6 cut(s)	44, 47, 50, 83, 486, 489
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	6 cut(s)	44, 47, 50, 83, 486, 489
GsuI	CTGGAG	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	101
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	216
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	3 cut(s)	107, 466, 551
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	3 cut(s)	21, 75, 135
Hpy188III	TCNNGA	2 cut(s)	191, 529
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	2 cut(s)	28, 40
HpyAV	CCTTC	3 cut(s)	130, 188, 224
HpyCH4III	ACNGT	2 cut(s)	273, 537
HpyCH4V	TGCA	3 cut(s)	212, 385, 414
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 58, 369
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	216
HspAI	GCGC	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	352
LpnPI	CCDG	8 cut(s)	71, 71, 114, 204, 371, 474, 531, 542
Lsp1109I	GCAGC	3 cut(s)	61, 472, 475
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	3 cut(s)	390, 416, 521
MfeI	CAATTG	1 cut(s)	225
MluCI	AATT	2 cut(s)	96, 225
MlyI	GAGTC	2 cut(s)	101, 475
MnlI	CCTC	6 cut(s)	79, 121, 124, 158, 247, 482
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	1 cut(s)	101
MunI	CAATTG	1 cut(s)	225
MwoI	GCNNNNNNNGC	3 cut(s)	49, 58, 369
NdeI	CATATG	1 cut(s)	368
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	1 cut(s)	216
NlaIV	GGNNCC	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	551
PkrI	GCNGC	6 cut(s)	45, 48, 51, 84, 487, 490
PleI	GAGTC	2 cut(s)	101, 474
PpsI	GAGTC	2 cut(s)	101, 474
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	3 cut(s)	7, 41, 526
PstI	CTGCAG	1 cut(s)	387
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
RseI	CAYNNNNRTG	1 cut(s)	345
SalI	GTCGAC	1 cut(s)	104
SatI	GCNGC	6 cut(s)	44, 47, 50, 83, 486, 489
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	3 cut(s)	7, 41, 526
ScaI	AGTACT	1 cut(s)	539
SchI	GAGTC	2 cut(s)	101, 475
SetI	ASST	6 cut(s)	9, 71, 199, 235, 482, 566
SfcI	CTRYAG	1 cut(s)	383
SinI	GGWCC	2 cut(s)	7, 526
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
SpeI	ACTAGT	1 cut(s)	313
Sse9I	AATT	2 cut(s)	96, 225
SsiI	CCGC	4 cut(s)	44, 47, 83, 402
SspMI	CTAG	1 cut(s)	314
TaaI	ACNGT	2 cut(s)	273, 537
TaqI	TCGA	1 cut(s)	105
TasI	AATT	2 cut(s)	96, 225
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	3 cut(s)	46, 49, 85
TfiI	GAWTC	1 cut(s)	551
TseI	GCWGC	3 cut(s)	49, 485, 488
TspGWI	ACGGA	2 cut(s)	41, 106
VpaK11BI	GGWCC	2 cut(s)	7, 526
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	1 cut(s)	314
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.