FvH4_7g23050

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011641
Physical Location & Seq
Forward (+)
18068997 .. 18072009
3013 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23050.t2

Sequence Viewer

Length: 816 bp
ATGGCAGAGAGCACTAGAAACCTCGCAACTCCAAGATGGTCTCTAACGGGAACGACAGCACTCGTCACCGGCGGCACTCGTGGAATTGGGTACGCCGTGGTGGAGGAGCTAGCTTCGCTTGGTGCTTATGTTTTCACTTGTTCTCGGAATGCAGAAGAACTTGAGAGGTGCTTGAAGGAATGGTCTGCTAAAGGGTTCCGGATCACTGGGATTGTGTGTGACGTTTCGGTTAAATCCGAGAGAGAGAAGCTAATGGAGCAAGTGGGTGTTTCTTTCGCTGGAAGGCTCAACATATTTGTAAATAATGTTGGCACAAACATAAGGAAACCAACTACTGAGTACACTTTTGAAGAGTATTCTAAGGTAATGAGTACCAATTTGGAATCTACATACCATTTGTGCCAAATTGCGCATCCGCTTTTGAAAGGATCCGGAGCAGGAAGCGTTGTGTTCATATCATCTGTGGCTGGTTTGGTGAGTCTTGGTTCTGGGACCATTTATGCAGCAAGTAAAGCTGCGATTAATCAGCTTACGAAAAATCTGGCTTGTGAATGGGCGAAAGACAATATCAGGAGCAATGCTGTTGCTCCTTGGTACACCCGAACCTCACTTGTGGAACACATGCTGGAGGACAAGAAGTTTCTGGAAGAGGTAACCTCTCGTACTCCTCTCAATCGTGTTGCAGAACCAGAAGAGGTCTCATCCTTGGTAGCATTCCTCTGCTTGCCGGCTGCTTCATACATCACCGGACAGATCATATGTGTCGATGGAGGCATGACTGCTAACAGTTTTTGCCCCACTAGTATCCCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

272

Amino Acids

29.34

Weight (kDa)

6.83

Isoelectric Point (pI)

31.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 51 - 280 4.8e-57 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 52 - 231 4.3e-45 short chain dehydrogenase
KR PF08659 57 - 199 3.5e-08 KR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011641)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06060
fragaria_vesca FvH4_7g23050 FvH4_7g23050
malus_domestica MD01G1139100.v1.1
prunus_persica Prupe.2G239600_v2.0.a1 Prupe.2G239600_v2.0.a1 Prupe.2G239600_v2.0.a1
pyrus_communis pycom01g15970
rosa_chinensis RchiOBHm_Chr1g0368291
rosa_laevigata RLG00000027223
rosa_multiflora Rmu_sc0006033.1_g000017 Rmu_sc0009391.1_g000003
rosa_roxburghii Rroxscaffold_4G00288680
rosa_rugosa Rorug01G0339900
rosa_samantha Rh1AG347400 Rh1BG310400 Rh1CG325800 Rh1DG342200
rosa_wichuraiana Rw1G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 411
AccIII TCCGGA 2 cut(s) 198, 431
AciI CCGC 2 cut(s) 72, 416
AclWI GGATC 3 cut(s) 209, 423, 436
AfaI GTAC 5 cut(s) 92, 341, 373, 596, 664
AgsI TTSAA 3 cut(s) 175, 350, 424
AhlI ACTAGT 1 cut(s) 800
AluBI AGCT 5 cut(s) 109, 113, 250, 515, 529
AluI AGCT 5 cut(s) 109, 113, 250, 515, 529
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 2 cut(s) 45, 703
AlwI GGATC 3 cut(s) 209, 423, 436
Aor13HI TCCGGA 2 cut(s) 198, 431
ApeKI GCWGC 3 cut(s) 503, 515, 731
AseI ATTAAT 1 cut(s) 522
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 1 cut(s) 492
AsuHPI GGTGA 3 cut(s) 58, 487, 736
AsuNHI GCTAGC 1 cut(s) 109
AvaII GGWCC 1 cut(s) 492
BamHI GGATCC 1 cut(s) 428
BauI CACGAG 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 3 cut(s) 502, 515, 718
BccI CCATC 2 cut(s) 30, 761
BceAI ACGGC 1 cut(s) 80
BciVI GTATCC 1 cut(s) 815
BcoDI GTCTC 2 cut(s) 45, 703
BcuI ACTAGT 1 cut(s) 800
BfaI CTAG 3 cut(s) 15, 110, 801
BfuI GTATCC 1 cut(s) 815
BisI GCNGC 4 cut(s) 73, 504, 516, 732
BlsI GCNGC 4 cut(s) 74, 505, 517, 733
Bme18I GGWCC 1 cut(s) 492
BmgT120I GGNCC 1 cut(s) 492
BmiI GGNNCC 3 cut(s) 197, 430, 493
BmrI ACTGGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 421
BmtI GCTAGC 1 cut(s) 113
BmuI ACTGGG 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 641, 673
BpmI CTGGAG 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 182
BsaI GGTCTC 2 cut(s) 45, 703
BsaJI CCNNGG 3 cut(s) 96, 590, 705
BsaWI WCCGGW 3 cut(s) 198, 431, 746
Bse118I RCCGGY 2 cut(s) 68, 727
Bse1I ACTGG 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 583
BseAI TCCGGA 2 cut(s) 198, 431
BseDI CCNNGG 3 cut(s) 96, 590, 705
BseGI GGATG 2 cut(s) 412, 701
BseMI GCAATG 1 cut(s) 583
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 2 cut(s) 119, 657
BseXI GCAGC 3 cut(s) 502, 515, 718
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 5 cut(s) 69, 199, 432, 728, 747
BslFI GGGAC 1 cut(s) 505
BsmAI GTCTC 2 cut(s) 45, 703
BsmFI GGGAC 1 cut(s) 505
BsmI GAATGC 2 cut(s) 154, 713
Bso31I GGTCTC 2 cut(s) 45, 703
Bsp1286I GDGCHC 1 cut(s) 14
Bsp13I TCCGGA 2 cut(s) 198, 431
Bsp143I GATC 3 cut(s) 201, 428, 753
BspACI CCGC 2 cut(s) 72, 416
BspCNI CTCAG 1 cut(s) 328
BspEI TCCGGA 2 cut(s) 198, 431
BspLI GGNNCC 3 cut(s) 197, 430, 493
BspOI GCTAGC 1 cut(s) 113
BspPI GGATC 3 cut(s) 209, 423, 436
BspTNI GGTCTC 2 cut(s) 45, 703
BsrDI GCAATG 1 cut(s) 583
BsrFI RCCGGY 2 cut(s) 68, 727
BsrI ACTGG 1 cut(s) 211
BssAI RCCGGY 2 cut(s) 68, 727
BssECI CCNNGG 3 cut(s) 96, 590, 705
BssMI GATC 3 cut(s) 201, 428, 753
BssSI CACGAG 1 cut(s) 78
BssT1I CCWWGG 2 cut(s) 590, 705
Bst2BI CACGAG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 788
Bst6I CTCTTC 3 cut(s) 345, 642, 687
BstC8I GCNNGC 3 cut(s) 111, 725, 729
BstDEI CTNAG 2 cut(s) 336, 360
BstDSI CCRYGG 1 cut(s) 96
BstEII GGTNACC 1 cut(s) 652
BstF5I GGATG 2 cut(s) 412, 701
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 3 cut(s) 204, 431, 756
BstMAI GTCTC 2 cut(s) 45, 703
BstMBI GATC 3 cut(s) 201, 428, 753
BstMWI GCNNNNNNNGC 3 cut(s) 115, 256, 512
BstNSI RCATGY 1 cut(s) 625
BstPI GGTNACC 1 cut(s) 652
BstV1I GCAGC 3 cut(s) 502, 515, 718
BstX2I RGATCY 1 cut(s) 428
BstYI RGATCY 1 cut(s) 428
BsuI GTATCC 1 cut(s) 815
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 2 cut(s) 412, 701
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 3 cut(s) 111, 725, 729
CfoI GCGC 1 cut(s) 412
Cfr10I RCCGGY 2 cut(s) 68, 727
Cfr13I GGNCC 1 cut(s) 492
Csp6I GTAC 5 cut(s) 91, 340, 372, 595, 663
CviAII CATG 2 cut(s) 622, 775
CviJI RGCY 9 cut(s) 109, 113, 250, 286, 467, 515, 529, 545, 731
CviKI_1 RGCY 9 cut(s) 109, 113, 250, 286, 467, 515, 529, 545, 731
CviQI GTAC 5 cut(s) 91, 340, 372, 595, 663
DdeI CTNAG 2 cut(s) 336, 360
DpnI GATC 3 cut(s) 203, 430, 755
DpnII GATC 3 cut(s) 201, 428, 753
Eam1104I CTCTTC 3 cut(s) 345, 642, 687
EarI CTCTTC 3 cut(s) 345, 642, 687
Eco130I CCWWGG 2 cut(s) 590, 705
Eco31I GGTCTC 2 cut(s) 45, 703
Eco47I GGWCC 1 cut(s) 492
Eco91I GGTNACC 1 cut(s) 652
EcoO65I GGTNACC 1 cut(s) 652
EcoT14I CCWWGG 2 cut(s) 590, 705
ErhI CCWWGG 2 cut(s) 590, 705
FaeI CATG 2 cut(s) 625, 778
FaqI GGGAC 1 cut(s) 505
FatI CATG 2 cut(s) 621, 774
FauNDI CATATG 1 cut(s) 758
Fnu4HI GCNGC 4 cut(s) 73, 504, 516, 732
FokI GGATG 2 cut(s) 399, 688
Fsp4HI GCNGC 4 cut(s) 73, 504, 516, 732
FspBI CTAG 3 cut(s) 15, 110, 801
FspI TGCGCA 1 cut(s) 411
GlaI GCGC 1 cut(s) 411
GluI GCNGC 4 cut(s) 73, 504, 516, 732
GsuI CTGGAG 1 cut(s) 647
HapII CCGG 5 cut(s) 69, 199, 432, 728, 747
HhaI GCGC 1 cut(s) 412
Hin1II CATG 2 cut(s) 625, 778
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HinfI GANTC 2 cut(s) 383, 478
HpaII CCGG 5 cut(s) 69, 199, 432, 728, 747
HphI GGTGA 3 cut(s) 58, 487, 736
Hpy166II GTNNAC 2 cut(s) 342, 597
Hpy188I TCNGA 2 cut(s) 147, 238
Hpy188III TCNNGA 4 cut(s) 199, 432, 571, 644
Hpy8I GTNNAC 2 cut(s) 342, 597
HpyAV CCTTC 2 cut(s) 169, 276
HpyCH4III ACNGT 1 cut(s) 788
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 152, 503, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 256, 512
HpyF3I CTNAG 2 cut(s) 336, 360
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 2 cut(s) 625, 778
HspAI GCGC 1 cut(s) 410
Kpn2I TCCGGA 2 cut(s) 198, 431
KroI GCCGGC 1 cut(s) 727
KroNI GCCGGC 1 cut(s) 729
Kzo9I GATC 3 cut(s) 201, 428, 753
LmnI GCTCC 5 cut(s) 106, 256, 434, 573, 592
Lsp1109I GCAGC 3 cut(s) 502, 515, 718
LweI GCATC 1 cut(s) 421
MaeI CTAG 3 cut(s) 15, 110, 801
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 3 cut(s) 64, 218, 652
MalI GATC 3 cut(s) 203, 430, 755
MboI GATC 3 cut(s) 201, 428, 753
MboII GAAGA 4 cut(s) 167, 362, 659, 704
MflI RGATCY 1 cut(s) 428
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 3 cut(s) 84, 376, 405
MlyI GAGTC 1 cut(s) 487
MroI TCCGGA 2 cut(s) 198, 431
MroNI GCCGGC 1 cut(s) 727
MseI TTAA 2 cut(s) 231, 522
MspI CCGG 5 cut(s) 69, 199, 432, 728, 747
Mva1269I GAATGC 2 cut(s) 154, 713
MwoI GCNNNNNNNGC 3 cut(s) 115, 256, 512
NaeI GCCGGC 1 cut(s) 729
NdeI CATATG 1 cut(s) 758
NdeII GATC 3 cut(s) 201, 428, 753
NgoMIV GCCGGC 1 cut(s) 727
NheI GCTAGC 1 cut(s) 109
NlaIII CATG 2 cut(s) 625, 778
NlaIV GGNNCC 3 cut(s) 197, 430, 493
NmuCI GTSAC 2 cut(s) 64, 218
NsbI TGCGCA 1 cut(s) 411
NspI RCATGY 1 cut(s) 625
PctI GAATGC 2 cut(s) 154, 713
PdiI GCCGGC 1 cut(s) 729
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 4 cut(s) 74, 505, 517, 733
PleI GAGTC 1 cut(s) 486
PpsI GAGTC 1 cut(s) 486
PshBI ATTAAT 1 cut(s) 522
PspEI GGTNACC 1 cut(s) 652
PspN4I GGNNCC 3 cut(s) 197, 430, 493
PspPI GGNCC 1 cut(s) 492
PsuI RGATCY 1 cut(s) 428
RsaI GTAC 5 cut(s) 92, 341, 373, 596, 664
RsaNI GTAC 5 cut(s) 91, 340, 372, 595, 663
SaqAI TTAA 2 cut(s) 231, 522
SatI GCNGC 4 cut(s) 73, 504, 516, 732
Sau3AI GATC 3 cut(s) 201, 428, 753
Sau96I GGNCC 1 cut(s) 492
SchI GAGTC 1 cut(s) 487
SduI GDGCHC 1 cut(s) 14
SfaNI GCATC 1 cut(s) 421
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SpeI ACTAGT 1 cut(s) 800
Sse9I AATT 3 cut(s) 84, 376, 405
SsiI CCGC 2 cut(s) 72, 416
SspMI CTAG 3 cut(s) 15, 110, 801
StyI CCWWGG 2 cut(s) 590, 705
TaaI ACNGT 1 cut(s) 788
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 765
TasI AATT 3 cut(s) 84, 376, 405
TatI WGTACW 1 cut(s) 339
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 2 cut(s) 231, 522
Tru9I TTAA 2 cut(s) 231, 522
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 2 cut(s) 64, 218
TseI GCWGC 3 cut(s) 503, 515, 731
Tsp45I GTSAC 2 cut(s) 64, 218
TspDTI ATGAA 2 cut(s) 442, 726
TspRI CASTG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 492
VspI ATTAAT 1 cut(s) 522
XceI RCATGY 1 cut(s) 625
XspI CTAG 3 cut(s) 15, 110, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.