Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006033.1

Orthogroup ID

OG0011641

Physical Location & Seq

Genomic Coordinates Forward (+)

93157 .. 95744

Gene Structure 2588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006033.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atggcggagagcctcgcaagtccgagatggtccctcaggggaacgactgccctcgtcaccggcggcactcgtggaattgggtacgccgcagtggaggagctagctgcgctgggtgcgtttgtgttcacctgttctcggaactcagcagaactcgaaaggtgccttaaggaatggtccggtaaggggttccgtgtcactggggttgtctgcgatgtttcgactaaatccgagagagaaaaactaatggagcaagtgggtgtttctttcactgggaagctcaatatatttgtaaacaatgttgggacaaacataaggaagccaactactgagtacacttcggaagagtattcaaaagtaatggctactaatttggaatccacatacaatctgtgccaacttgcgcatccgcttttgaaagcatctggagcaggaagcattgtgttcatatcatctgtggctggtttggtgagcattggttccgggaccatttatgcagcaactaaagctgcgatcaatcagctcacgaaaaatctggcatgtgaatgggcgaaagacaatatcaggagcaatgctgttgctccttggtacaccagaacctcactcgttgaacacatgctggaggacaagaagtttgtggaagagataacctctcgtacccctctcaatcgtgttgcagaacctgaggaggtctcatccttggtagccttcctctgcctaccagctgcttcatacatcaccggacagattatatctgttgatggaggcatgactgctaacagtttttgcccctctaagataccacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

268

Amino Acids

28.82

Weight (kDa)

7.53

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06060
fragaria_vesca	FvH4_7g23050 FvH4_7g23050
malus_domestica	MD01G1139100.v1.1
prunus_persica	Prupe.2G239600_v2.0.a1 Prupe.2G239600_v2.0.a1 Prupe.2G239600_v2.0.a1
pyrus_communis	pycom01g15970
rosa_chinensis	RchiOBHm_Chr1g0368291
rosa_laevigata	RLG00000027223
rosa_multiflora	Rmu_sc0006033.1_g000017 Rmu_sc0009391.1_g000003
rosa_roxburghii	Rroxscaffold_4G00288680
rosa_rugosa	Rorug01G0339900
rosa_samantha	Rh1AG347400 Rh1BG310400 Rh1CG325800 Rh1DG342200
rosa_wichuraiana	Rw1G030920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	402
AccB1I	GGYRCC	1 cut(s)	159
AciI	CCGC	4 cut(s)	5, 63, 87, 407
AfaI	GTAC	4 cut(s)	83, 332, 587, 655
AfiI	CCNNNNNNNGG	2 cut(s)	135, 183
AflII	CTTAAG	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	351, 415, 608
AluBI	AGCT	6 cut(s)	100, 104, 277, 506, 520, 722
AluI	AGCT	6 cut(s)	100, 104, 277, 506, 520, 722
Alw26I	GTCTC	1 cut(s)	694
AlwNI	CAGNNNCTG	1 cut(s)	680
ApeKI	GCWGC	4 cut(s)	104, 494, 506, 722
ArsI	GACNNNNNNTTYG	2 cut(s)	614, 646
AspLEI	GCGC	2 cut(s)	109, 403
AspS9I	GGNCC	3 cut(s)	30, 174, 483
AsuC2I	CCSGG	1 cut(s)	481
AsuHPI	GGTGA	4 cut(s)	49, 118, 478, 727
AsuNHI	GCTAGC	1 cut(s)	100
AvaII	GGWCC	3 cut(s)	30, 174, 483
AxyI	CCTNAGG	2 cut(s)	35, 681
BanI	GGYRCC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	69
BbvI	GCAGC	4 cut(s)	91, 493, 506, 709
BccI	CCATC	2 cut(s)	21, 752
BcnI	CCSGG	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	694
BfaI	CTAG	1 cut(s)	101
BfrI	CTTAAG	1 cut(s)	164
BisI	GCNGC	6 cut(s)	64, 87, 105, 495, 507, 723
BlsI	GCNGC	6 cut(s)	65, 88, 106, 496, 508, 724
Bme1390I	CCNGG	1 cut(s)	481
Bme18I	GGWCC	3 cut(s)	30, 174, 483
BmgT120I	GGNCC	3 cut(s)	30, 174, 483
BmiI	GGNNCC	5 cut(s)	32, 161, 188, 478, 484
BmrFI	CCNGG	1 cut(s)	481
BmrI	ACTGGG	2 cut(s)	207, 279
BmsI	GCATC	2 cut(s)	412, 428
BmtI	GCTAGC	1 cut(s)	104
BmuI	ACTGGG	2 cut(s)	207, 279
BplI	GAGNNNNNCTC	4 cut(s)	632, 664, 674, 706
BpmI	CTGGAG	2 cut(s)	444, 638
BpuMI	CCSGG	1 cut(s)	481
BsaI	GGTCTC	1 cut(s)	694
BsaJI	CCNNGG	2 cut(s)	581, 696
BsaWI	WCCGGW	2 cut(s)	176, 737
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 183
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	2 cut(s)	202, 274
Bse21I	CCTNAGG	2 cut(s)	35, 681
Bse3DI	GCAATG	1 cut(s)	574
BseDI	CCNNGG	2 cut(s)	581, 696
BseGI	GGATG	2 cut(s)	403, 692
BseLI	CCNNNNNNNGG	2 cut(s)	135, 183
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	4 cut(s)	49, 156, 318, 672
BseNI	ACTGG	2 cut(s)	202, 274
BseRI	GAGGAG	2 cut(s)	110, 698
BseXI	GCAGC	4 cut(s)	91, 493, 506, 709
BseYI	CCCAGC	1 cut(s)	109
BshNI	GGYRCC	1 cut(s)	159
BsiSI	CCGG	4 cut(s)	60, 177, 480, 738
BslFI	GGGAC	3 cut(s)	16, 316, 496
BslI	CCNNNNNNNGG	2 cut(s)	135, 183
BsmAI	GTCTC	1 cut(s)	694
BsmFI	GGGAC	3 cut(s)	16, 316, 496
Bso31I	GGTCTC	1 cut(s)	694
Bsp143I	GATC	1 cut(s)	510
BspACI	CCGC	4 cut(s)	5, 63, 87, 407
BspCNI	CTCAG	4 cut(s)	48, 155, 319, 673
BspLI	GGNNCC	5 cut(s)	32, 161, 188, 478, 484
BspOI	GCTAGC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	159
BspTI	CTTAAG	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	694
BsrDI	GCAATG	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	202, 274
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	581, 696
BssMI	GATC	1 cut(s)	510
BssSI	CACGAG	1 cut(s)	69
BssT1I	CCWWGG	2 cut(s)	581, 696
Bst2BI	CACGAG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	779
Bst6I	CTCTTC	2 cut(s)	336, 633
BstAFI	CTTAAG	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	5 cut(s)	35, 142, 327, 681, 792
BstF5I	GGATG	2 cut(s)	403, 692
BstHHI	GCGC	2 cut(s)	109, 403
BstKTI	GATC	1 cut(s)	513
BstMAI	GTCTC	1 cut(s)	694
BstMBI	GATC	1 cut(s)	510
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 113, 425, 503
BstNSI	RCATGY	2 cut(s)	540, 616
BstSCI	CCNGG	1 cut(s)	479
BstV1I	GCAGC	4 cut(s)	91, 493, 506, 709
Bsu36I	CCTNAGG	2 cut(s)	35, 681
BtgZI	GCGATG	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	403, 692
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	3 cut(s)	96, 195, 267
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	680
CfoI	GCGC	2 cut(s)	109, 403
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	3 cut(s)	30, 174, 483
Csp6I	GTAC	4 cut(s)	82, 331, 586, 654
CviAII	CATG	3 cut(s)	537, 613, 766
CviQI	GTAC	4 cut(s)	82, 331, 586, 654
DdeI	CTNAG	5 cut(s)	35, 142, 327, 681, 792
DpnI	GATC	1 cut(s)	512
DpnII	GATC	1 cut(s)	510
Eam1104I	CTCTTC	2 cut(s)	336, 633
EarI	CTCTTC	2 cut(s)	336, 633
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	581, 696
Eco31I	GGTCTC	1 cut(s)	694
Eco47I	GGWCC	3 cut(s)	30, 174, 483
Eco81I	CCTNAGG	2 cut(s)	35, 681
EcoT14I	CCWWGG	2 cut(s)	581, 696
ErhI	CCWWGG	2 cut(s)	581, 696
FaeI	CATG	3 cut(s)	540, 616, 769
FaqI	GGGAC	3 cut(s)	16, 316, 496
FatI	CATG	3 cut(s)	536, 612, 765
Fnu4HI	GCNGC	6 cut(s)	64, 87, 105, 495, 507, 723
FokI	GGATG	2 cut(s)	390, 679
Fsp4HI	GCNGC	6 cut(s)	64, 87, 105, 495, 507, 723
FspBI	CTAG	1 cut(s)	101
FspI	TGCGCA	1 cut(s)	402
GlaI	GCGC	2 cut(s)	108, 402
GluI	GCNGC	6 cut(s)	64, 87, 105, 495, 507, 723
GsaI	CCCAGC	1 cut(s)	113
GsuI	CTGGAG	2 cut(s)	444, 638
HapII	CCGG	4 cut(s)	60, 177, 480, 738
HhaI	GCGC	2 cut(s)	109, 403
Hin1II	CATG	3 cut(s)	540, 616, 769
Hin6I	GCGC	2 cut(s)	107, 401
HinP1I	GCGC	2 cut(s)	107, 401
HinfI	GANTC	1 cut(s)	374
HpaII	CCGG	4 cut(s)	60, 177, 480, 738
HphI	GGTGA	4 cut(s)	49, 118, 478, 727
Hpy166II	GTNNAC	4 cut(s)	126, 292, 333, 588
Hpy188I	TCNGA	4 cut(s)	24, 138, 229, 340
Hpy188III	TCNNGA	3 cut(s)	423, 523, 562
Hpy8I	GTNNAC	4 cut(s)	126, 292, 333, 588
HpyAV	CCTTC	1 cut(s)	715
HpyCH4III	ACNGT	1 cut(s)	779
HpyCH4V	TGCA	2 cut(s)	494, 674
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 113, 425, 503
HpyF3I	CTNAG	5 cut(s)	35, 142, 327, 681, 792
Hsp92II	CATG	3 cut(s)	540, 616, 769
HspAI	GCGC	2 cut(s)	107, 401
Kzo9I	GATC	1 cut(s)	510
LmnI	GCTCC	5 cut(s)	97, 247, 425, 564, 583
Lsp1109I	GCAGC	4 cut(s)	91, 493, 506, 709
LweI	GCATC	2 cut(s)	412, 428
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	2 cut(s)	55, 193
MalI	GATC	1 cut(s)	512
MboI	GATC	1 cut(s)	510
MboII	GAAGA	2 cut(s)	353, 650
MluCI	AATT	2 cut(s)	75, 367
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	541
MspA1I	CMGCKG	1 cut(s)	722
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	4 cut(s)	60, 177, 480, 738
MspR9I	CCNGG	1 cut(s)	481
MwoI	GCNNNNNNNGC	4 cut(s)	106, 113, 425, 503
NciI	CCSGG	1 cut(s)	481
NdeII	GATC	1 cut(s)	510
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	3 cut(s)	540, 616, 769
NlaIV	GGNNCC	5 cut(s)	32, 161, 188, 478, 484
NmuCI	GTSAC	2 cut(s)	55, 193
NsbI	TGCGCA	1 cut(s)	402
NspI	RCATGY	2 cut(s)	540, 616
PfeI	GAWTC	1 cut(s)	374
PfoI	TCCNGGA	1 cut(s)	479
PkrI	GCNGC	6 cut(s)	65, 88, 106, 496, 508, 724
PspFI	CCCAGC	1 cut(s)	109
PspN4I	GGNNCC	5 cut(s)	32, 161, 188, 478, 484
PspPI	GGNCC	3 cut(s)	30, 174, 483
PstNI	CAGNNNCTG	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	4 cut(s)	83, 332, 587, 655
RsaNI	GTAC	4 cut(s)	82, 331, 586, 654
RseI	CAYNNNNRTG	1 cut(s)	541
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	6 cut(s)	64, 87, 105, 495, 507, 723
Sau3AI	GATC	1 cut(s)	510
Sau96I	GGNCC	3 cut(s)	30, 174, 483
ScrFI	CCNGG	1 cut(s)	481
SfaNI	GCATC	2 cut(s)	412, 428
SgrAI	CRCCGGYG	1 cut(s)	59
SinI	GGWCC	3 cut(s)	30, 174, 483
SmiMI	CAYNNNNRTG	1 cut(s)	541
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	75, 367
SsiI	CCGC	4 cut(s)	5, 63, 87, 407
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	479
StyI	CCWWGG	2 cut(s)	581, 696
TaaI	ACNGT	1 cut(s)	779
TaqI	TCGA	2 cut(s)	153, 218
TasI	AATT	2 cut(s)	75, 367
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	2 cut(s)	66, 89
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	3 cut(s)	96, 202, 274
TseFI	GTSAC	2 cut(s)	55, 193
TseI	GCWGC	4 cut(s)	104, 494, 506, 722
Tsp45I	GTSAC	2 cut(s)	55, 193
TspDTI	ATGAA	2 cut(s)	433, 717
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	3 cut(s)	96, 202, 274
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	3 cut(s)	30, 174, 483
XceI	RCATGY	2 cut(s)	540, 616
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.