Rh1DG342200

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0011641
Physical Location & Seq
Forward (+)
56702952 .. 56708993
6042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG342200.1

Sequence Viewer

Length: 672 bp
ATGGCAGAGAGCCTCGCAAGTCCGAGATGGTCCCTCAGGGGAACGACTGCCCTCGTCACCGGCGGCACTCGTGGAATTGGGTACGCCGCAGTGGAGGAGCTAGCTGCGCTTGGTGCGTTTGTGTTCACCTGTTCTCGAAACTCAGCAGAACTCGAAAGGTGCCTTAAGGAATGGTCCGGTAAGGGGTTCCGTGTCACTGGGGTTGTCTGCGATGTTTCGACTAAATCCGAGAGAGAAAAACTAATGGAGCAAGTGGGTGTTTCTTTCACTGGGAAGCTCAATATATTCGTAAACAATGTTGGGATAAACATAAGGAAGCCAACTACTGAGTACACTTCGGAAGAGTATTCAAAAGTAATGGCTACTAATTTGGAATCCACATACAATCTGTGCCAACTTGCGCATCCGCTTTTGAAAGCATCTGGAGCAGGAAGCATTGTGTTCATATCATCTGTGGCTGGTTTGGGGAGTGTTGGTTCTGGGACCATTTATGCAGCAACTAAAGCTGCGATCAATCAGCTCACGAAAAATCTGGCATGTGAATGGGCGAAAGACAATATCAGGAGCAACGCTGTTGCTCCTTGGTACACCAGAACCTCACTTGTTGAACACGTAAGTACCTGTACTCTTAATTCATTATCATCATTTAGAAGCTTTGCATATGTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

223

Amino Acids

23.96

Weight (kDa)

9.04

Isoelectric Point (pI)

29.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 16 - 205 2.4e-53 short chain dehydrogenase
KR PF08659 16 - 176 3.2e-14 KR domain
Epimerase PF01370 17 - 181 1.9e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 24 - 206 6.5e-42 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011641)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06060
fragaria_vesca FvH4_7g23050 FvH4_7g23050
malus_domestica MD01G1139100.v1.1
prunus_persica Prupe.2G239600_v2.0.a1 Prupe.2G239600_v2.0.a1 Prupe.2G239600_v2.0.a1
pyrus_communis pycom01g15970
rosa_chinensis RchiOBHm_Chr1g0368291
rosa_laevigata RLG00000027223
rosa_multiflora Rmu_sc0006033.1_g000017 Rmu_sc0009391.1_g000003
rosa_roxburghii Rroxscaffold_4G00288680
rosa_rugosa Rorug01G0339900
rosa_samantha Rh1AG347400 Rh1BG310400 Rh1CG325800 Rh1DG342200
rosa_wichuraiana Rw1G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 402
AccB1I GGYRCC 1 cut(s) 159
AciI CCGC 3 cut(s) 63, 87, 407
AfaI GTAC 5 cut(s) 83, 332, 587, 619, 625
AfiI CCNNNNNNNGG 1 cut(s) 183
AflII CTTAAG 1 cut(s) 164
AflIII ACRYGT 1 cut(s) 610
AgsI TTSAA 3 cut(s) 351, 415, 608
AloI GAACNNNNNNTCC 2 cut(s) 460, 492
AluBI AGCT 6 cut(s) 100, 104, 277, 506, 520, 654
AluI AGCT 6 cut(s) 100, 104, 277, 506, 520, 654
ApeKI GCWGC 3 cut(s) 104, 494, 506
AspLEI GCGC 2 cut(s) 109, 403
AspS9I GGNCC 3 cut(s) 30, 174, 483
AsuHPI GGTGA 2 cut(s) 49, 118
AsuNHI GCTAGC 1 cut(s) 100
AvaII GGWCC 3 cut(s) 30, 174, 483
AxyI CCTNAGG 1 cut(s) 35
BaeI ACNNNNGTAYC 2 cut(s) 601, 634
BanI GGYRCC 1 cut(s) 159
BauI CACGAG 1 cut(s) 69
BbvI GCAGC 3 cut(s) 91, 493, 506
BccI CCATC 1 cut(s) 21
BfaI CTAG 1 cut(s) 101
BfrI CTTAAG 1 cut(s) 164
BisI GCNGC 5 cut(s) 64, 87, 105, 495, 507
BlsI GCNGC 5 cut(s) 65, 88, 106, 496, 508
Bme18I GGWCC 3 cut(s) 30, 174, 483
BmgT120I GGNCC 3 cut(s) 30, 174, 483
BmiI GGNNCC 4 cut(s) 32, 161, 188, 484
BmrI ACTGGG 2 cut(s) 207, 279
BmsI GCATC 2 cut(s) 412, 428
BmtI GCTAGC 1 cut(s) 104
BmuI ACTGGG 2 cut(s) 207, 279
BpmI CTGGAG 1 cut(s) 444
BsaAI YACGTR 1 cut(s) 613
BsaJI CCNNGG 1 cut(s) 581
BsaWI WCCGGW 1 cut(s) 176
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 202, 274
Bse21I CCTNAGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 581
BseGI GGATG 1 cut(s) 403
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMII CTCAG 3 cut(s) 49, 156, 318
BseNI ACTGG 2 cut(s) 202, 274
BseRI GAGGAG 1 cut(s) 110
BseXI GCAGC 3 cut(s) 91, 493, 506
BshNI GGYRCC 1 cut(s) 159
BsiSI CCGG 2 cut(s) 60, 177
BslFI GGGAC 2 cut(s) 16, 496
BslI CCNNNNNNNGG 1 cut(s) 183
BsmFI GGGAC 2 cut(s) 16, 496
Bsp143I GATC 1 cut(s) 510
BspACI CCGC 3 cut(s) 63, 87, 407
BspCNI CTCAG 3 cut(s) 48, 155, 319
BspLI GGNNCC 4 cut(s) 32, 161, 188, 484
BspOI GCTAGC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 159
BspTI CTTAAG 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 2 cut(s) 202, 274
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 581
BssMI GATC 1 cut(s) 510
BssSI CACGAG 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 581
Bst2BI CACGAG 1 cut(s) 69
Bst6I CTCTTC 1 cut(s) 336
BstAFI CTTAAG 1 cut(s) 164
BstBAI YACGTR 1 cut(s) 613
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 3 cut(s) 35, 142, 327
BstF5I GGATG 1 cut(s) 403
BstHHI GCGC 2 cut(s) 109, 403
BstKTI GATC 1 cut(s) 513
BstMBI GATC 1 cut(s) 510
BstMWI GCNNNNNNNGC 4 cut(s) 106, 113, 425, 503
BstNSI RCATGY 1 cut(s) 540
BstV1I GCAGC 3 cut(s) 91, 493, 506
Bsu36I CCTNAGG 1 cut(s) 35
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 1 cut(s) 403
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 3 cut(s) 96, 195, 267
Cac8I GCNNGC 1 cut(s) 102
CfoI GCGC 2 cut(s) 109, 403
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 3 cut(s) 30, 174, 483
Csp6I GTAC 5 cut(s) 82, 331, 586, 618, 624
CviAII CATG 1 cut(s) 537
CviQI GTAC 5 cut(s) 82, 331, 586, 618, 624
DdeI CTNAG 3 cut(s) 35, 142, 327
DpnI GATC 1 cut(s) 512
DpnII GATC 1 cut(s) 510
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 581
Eco47I GGWCC 3 cut(s) 30, 174, 483
Eco81I CCTNAGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 581
ErhI CCWWGG 1 cut(s) 581
FaeI CATG 1 cut(s) 540
FaiI YATR 8 cut(s) 284, 311, 382, 446, 492, 538, 661, 663
FaqI GGGAC 2 cut(s) 16, 496
FatI CATG 1 cut(s) 536
FauNDI CATATG 1 cut(s) 661
Fnu4HI GCNGC 5 cut(s) 64, 87, 105, 495, 507
FokI GGATG 1 cut(s) 390
Fsp4HI GCNGC 5 cut(s) 64, 87, 105, 495, 507
FspBI CTAG 1 cut(s) 101
FspI TGCGCA 1 cut(s) 402
GlaI GCGC 2 cut(s) 108, 402
GluI GCNGC 5 cut(s) 64, 87, 105, 495, 507
GsuI CTGGAG 1 cut(s) 444
HapII CCGG 2 cut(s) 60, 177
HhaI GCGC 2 cut(s) 109, 403
Hin1II CATG 1 cut(s) 540
Hin6I GCGC 2 cut(s) 107, 401
HinP1I GCGC 2 cut(s) 107, 401
HindIII AAGCTT 1 cut(s) 652
HinfI GANTC 1 cut(s) 374
HpaII CCGG 2 cut(s) 60, 177
HphI GGTGA 2 cut(s) 49, 118
Hpy166II GTNNAC 4 cut(s) 126, 292, 333, 588
Hpy188I TCNGA 3 cut(s) 24, 229, 340
Hpy188III TCNNGA 4 cut(s) 135, 423, 523, 562
Hpy8I GTNNAC 4 cut(s) 126, 292, 333, 588
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 2 cut(s) 494, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 113, 425, 503
HpyF3I CTNAG 3 cut(s) 35, 142, 327
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 1 cut(s) 540
HspAI GCGC 2 cut(s) 107, 401
Kzo9I GATC 1 cut(s) 510
LmnI GCTCC 5 cut(s) 97, 247, 425, 564, 583
Lsp1109I GCAGC 3 cut(s) 91, 493, 506
LweI GCATC 2 cut(s) 412, 428
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 2 cut(s) 55, 193
MalI GATC 1 cut(s) 512
MboI GATC 1 cut(s) 510
MboII GAAGA 1 cut(s) 353
MluCI AATT 3 cut(s) 75, 367, 631
MnlI CCTC 5 cut(s) 23, 44, 62, 88, 607
MseI TTAA 2 cut(s) 165, 630
MslI CAYNNNNRTG 1 cut(s) 541
MspCI CTTAAG 1 cut(s) 164
MspI CCGG 2 cut(s) 60, 177
MwoI GCNNNNNNNGC 4 cut(s) 106, 113, 425, 503
NdeI CATATG 1 cut(s) 661
NdeII GATC 1 cut(s) 510
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 1 cut(s) 540
NlaIV GGNNCC 4 cut(s) 32, 161, 188, 484
NmuCI GTSAC 2 cut(s) 55, 193
NsbI TGCGCA 1 cut(s) 402
NspI RCATGY 1 cut(s) 540
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 5 cut(s) 65, 88, 106, 496, 508
Ppu21I YACGTR 1 cut(s) 613
PspN4I GGNNCC 4 cut(s) 32, 161, 188, 484
PspPI GGNCC 3 cut(s) 30, 174, 483
RsaI GTAC 5 cut(s) 83, 332, 587, 619, 625
RsaNI GTAC 5 cut(s) 82, 331, 586, 618, 624
RseI CAYNNNNRTG 1 cut(s) 541
SaqAI TTAA 2 cut(s) 165, 630
SatI GCNGC 5 cut(s) 64, 87, 105, 495, 507
Sau3AI GATC 1 cut(s) 510
Sau96I GGNCC 3 cut(s) 30, 174, 483
SfaNI GCATC 2 cut(s) 412, 428
SgrAI CRCCGGYG 1 cut(s) 59
SinI GGWCC 3 cut(s) 30, 174, 483
SmiMI CAYNNNNRTG 1 cut(s) 541
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 3 cut(s) 75, 367, 631
SsiI CCGC 3 cut(s) 63, 87, 407
SspMI CTAG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 581
TaiI ACGT 1 cut(s) 615
TaqI TCGA 3 cut(s) 136, 153, 218
TasI AATT 3 cut(s) 75, 367, 631
TatI WGTACW 2 cut(s) 330, 623
TauI GCSGC 2 cut(s) 66, 89
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 165, 630
Tru9I TTAA 2 cut(s) 165, 630
TscAI CASTG 3 cut(s) 96, 202, 274
TseFI GTSAC 2 cut(s) 55, 193
TseI GCWGC 3 cut(s) 104, 494, 506
Tsp45I GTSAC 2 cut(s) 55, 193
TspDTI ATGAA 2 cut(s) 433, 624
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 3 cut(s) 96, 202, 274
Vha464I CTTAAG 1 cut(s) 164
VpaK11BI GGWCC 3 cut(s) 30, 174, 483
XceI RCATGY 1 cut(s) 540
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.