RLG00000027223

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0011641
Physical Location & Seq
Reverse (-)
9702519 .. 9705090
2572 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027223

Sequence Viewer

Length: 807 bp
ATGGCAGAGAGCCTCGCAAGTCCGAGATGGTCCCTCAGGGGAACGACTGCCCTCGTCACCGGCGGCACTCGTGGAATTGGGTACGCCGCAGTGGAGGAGCTAGCTGCGCTTGGTGCGTTTGTGTTCACCTGTTCTCGGAACTCAGCAGAACTCGAAAGGTGCCTTAAGGAATGGTCCGGTAAGGGGTTCCGTGTCACTGGGGTTGTCTGCGATGTTTCGATTACATCCGAGAGAGAAAAACTAATGGAGCAAGTGGGTGTTTCTTTCAATGGGAAGCTCAATATTTTTGTAAACAATGTTGGGACAAACATAAGGAAGCCAACTACTGGGTACACTTCTGAAGAGTATTCAAAACTAATGGCTACCAATTTGGAATCCACATACAATCTGTGCCAACTTGCGCATCCGCTTTTGAAAGCATCTGGAGCAGGAAGCATTGTGTTCATATCATCTGTGGCTGGTTTGGTGAGCATTGGTTCCGGGACCATTTATGCAGCAACTAAAGCTGCGATCAATCAGCTCACGAAAAATCTGGCATGTGAATGGGCGAAAGACAATATCAGGAGCAACGCTGTTGCTCCTTGGTACACCAGAACCTCACTTGTTGAACACTTGCTGGAGGACAAGAAGTTTGTGGAAGAGATAACCTCTCGTACCCCTCTCAATCGTGTTGCAGAACCTGAGGAGGTTTCATCCTTGGTAGCCTTCCTCTGCCTACCAGCTGCTTCATACATCACCGGACAGGTTATATCTGTTGATGGAGGCATGACTGCTAACAGTTTTTGCCCCTCTAATATACCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

269

Amino Acids

28.72

Weight (kDa)

6.74

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 16 - 208 1.7e-51 short chain dehydrogenase
KR PF08659 16 - 176 8.3e-13 KR domain
adh_short_C2 PF13561 24 - 257 1.9e-59 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011641)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06060
fragaria_vesca FvH4_7g23050 FvH4_7g23050
malus_domestica MD01G1139100.v1.1
prunus_persica Prupe.2G239600_v2.0.a1 Prupe.2G239600_v2.0.a1 Prupe.2G239600_v2.0.a1
pyrus_communis pycom01g15970
rosa_chinensis RchiOBHm_Chr1g0368291
rosa_laevigata RLG00000027223
rosa_multiflora Rmu_sc0006033.1_g000017 Rmu_sc0009391.1_g000003
rosa_roxburghii Rroxscaffold_4G00288680
rosa_rugosa Rorug01G0339900
rosa_samantha Rh1AG347400 Rh1BG310400 Rh1CG325800 Rh1DG342200
rosa_wichuraiana Rw1G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 402
AccB1I GGYRCC 1 cut(s) 159
AccB7I CCANNNNNTGG 1 cut(s) 326
AciI CCGC 3 cut(s) 63, 87, 407
AcuI CTGAAG 1 cut(s) 360
AfaI GTAC 4 cut(s) 83, 332, 587, 655
AfiI CCNNNNNNNGG 3 cut(s) 135, 183, 326
AflII CTTAAG 1 cut(s) 164
AgsI TTSAA 4 cut(s) 268, 351, 415, 608
AluBI AGCT 6 cut(s) 100, 104, 277, 506, 520, 722
AluI AGCT 6 cut(s) 100, 104, 277, 506, 520, 722
AlwNI CAGNNNCTG 1 cut(s) 680
ApeKI GCWGC 4 cut(s) 104, 494, 506, 722
ArsI GACNNNNNNTTYG 2 cut(s) 614, 646
AspLEI GCGC 2 cut(s) 109, 403
AspS9I GGNCC 3 cut(s) 30, 174, 483
AsuC2I CCSGG 1 cut(s) 481
AsuHPI GGTGA 4 cut(s) 49, 118, 478, 727
AsuNHI GCTAGC 1 cut(s) 100
AvaII GGWCC 3 cut(s) 30, 174, 483
AxyI CCTNAGG 2 cut(s) 35, 681
BanI GGYRCC 1 cut(s) 159
BauI CACGAG 1 cut(s) 69
BbvI GCAGC 4 cut(s) 91, 493, 506, 709
BccI CCATC 2 cut(s) 21, 752
BcnI CCSGG 1 cut(s) 481
BfaI CTAG 1 cut(s) 101
BfrI CTTAAG 1 cut(s) 164
BisI GCNGC 6 cut(s) 64, 87, 105, 495, 507, 723
BlsI GCNGC 6 cut(s) 65, 88, 106, 496, 508, 724
Bme1390I CCNGG 1 cut(s) 481
Bme18I GGWCC 3 cut(s) 30, 174, 483
BmgT120I GGNCC 3 cut(s) 30, 174, 483
BmiI GGNNCC 5 cut(s) 32, 161, 188, 478, 484
BmrFI CCNGG 1 cut(s) 481
BmrI ACTGGG 2 cut(s) 207, 336
BmsI GCATC 2 cut(s) 412, 428
BmtI GCTAGC 1 cut(s) 104
BmuI ACTGGG 2 cut(s) 207, 336
BplI GAGNNNNNCTC 2 cut(s) 632, 664
BpmI CTGGAG 2 cut(s) 444, 638
BpuMI CCSGG 1 cut(s) 481
BsaJI CCNNGG 2 cut(s) 581, 696
BsaWI WCCGGW 2 cut(s) 176, 737
Bsc4I CCNNNNNNNGG 3 cut(s) 135, 183, 326
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 202, 331
Bse21I CCTNAGG 2 cut(s) 35, 681
BseDI CCNNGG 2 cut(s) 581, 696
BseGI GGATG 3 cut(s) 224, 403, 692
BseLI CCNNNNNNNGG 3 cut(s) 135, 183, 326
BseMII CTCAG 3 cut(s) 49, 156, 672
BseNI ACTGG 2 cut(s) 202, 331
BseRI GAGGAG 2 cut(s) 110, 698
BseXI GCAGC 4 cut(s) 91, 493, 506, 709
BshNI GGYRCC 1 cut(s) 159
BsiSI CCGG 4 cut(s) 60, 177, 480, 738
BslFI GGGAC 3 cut(s) 16, 316, 496
BslI CCNNNNNNNGG 3 cut(s) 135, 183, 326
BsmFI GGGAC 3 cut(s) 16, 316, 496
Bsp143I GATC 1 cut(s) 510
BspACI CCGC 3 cut(s) 63, 87, 407
BspCNI CTCAG 3 cut(s) 48, 155, 673
BspLI GGNNCC 5 cut(s) 32, 161, 188, 478, 484
BspOI GCTAGC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 159
BspTI CTTAAG 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 2 cut(s) 202, 331
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 581, 696
BssMI GATC 1 cut(s) 510
BssSI CACGAG 1 cut(s) 69
BssT1I CCWWGG 2 cut(s) 581, 696
Bst2BI CACGAG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 779
Bst6I CTCTTC 2 cut(s) 336, 633
BstAFI CTTAAG 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 3 cut(s) 35, 142, 681
BstF5I GGATG 3 cut(s) 224, 403, 692
BstHHI GCGC 2 cut(s) 109, 403
BstKTI GATC 1 cut(s) 513
BstMBI GATC 1 cut(s) 510
BstMWI GCNNNNNNNGC 4 cut(s) 106, 113, 425, 503
BstNSI RCATGY 1 cut(s) 540
BstSCI CCNGG 1 cut(s) 479
BstV1I GCAGC 4 cut(s) 91, 493, 506, 709
Bsu36I CCTNAGG 2 cut(s) 35, 681
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 3 cut(s) 224, 403, 692
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 96, 195
Cac8I GCNNGC 1 cut(s) 102
CaiI CAGNNNCTG 1 cut(s) 680
CfoI GCGC 2 cut(s) 109, 403
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 3 cut(s) 30, 174, 483
Csp6I GTAC 4 cut(s) 82, 331, 586, 654
CviAII CATG 2 cut(s) 537, 766
CviQI GTAC 4 cut(s) 82, 331, 586, 654
DdeI CTNAG 3 cut(s) 35, 142, 681
DpnI GATC 1 cut(s) 512
DpnII GATC 1 cut(s) 510
Eam1104I CTCTTC 2 cut(s) 336, 633
EarI CTCTTC 2 cut(s) 336, 633
Eco130I CCWWGG 2 cut(s) 581, 696
Eco47I GGWCC 3 cut(s) 30, 174, 483
Eco57I CTGAAG 1 cut(s) 360
Eco81I CCTNAGG 2 cut(s) 35, 681
EcoT14I CCWWGG 2 cut(s) 581, 696
ErhI CCWWGG 2 cut(s) 581, 696
FaeI CATG 2 cut(s) 540, 769
FaiI YATR 9 cut(s) 311, 382, 446, 492, 538, 730, 749, 767, 797
FaqI GGGAC 3 cut(s) 16, 316, 496
FatI CATG 2 cut(s) 536, 765
Fnu4HI GCNGC 6 cut(s) 64, 87, 105, 495, 507, 723
FokI GGATG 3 cut(s) 211, 390, 679
Fsp4HI GCNGC 6 cut(s) 64, 87, 105, 495, 507, 723
FspBI CTAG 1 cut(s) 101
FspI TGCGCA 1 cut(s) 402
GlaI GCGC 2 cut(s) 108, 402
GluI GCNGC 6 cut(s) 64, 87, 105, 495, 507, 723
GsuI CTGGAG 2 cut(s) 444, 638
HapII CCGG 4 cut(s) 60, 177, 480, 738
HhaI GCGC 2 cut(s) 109, 403
Hin1II CATG 2 cut(s) 540, 769
Hin6I GCGC 2 cut(s) 107, 401
HinP1I GCGC 2 cut(s) 107, 401
HinfI GANTC 1 cut(s) 374
HpaII CCGG 4 cut(s) 60, 177, 480, 738
HphI GGTGA 4 cut(s) 49, 118, 478, 727
Hpy166II GTNNAC 4 cut(s) 126, 292, 333, 588
Hpy188I TCNGA 4 cut(s) 24, 138, 229, 340
Hpy188III TCNNGA 3 cut(s) 423, 523, 562
Hpy8I GTNNAC 4 cut(s) 126, 292, 333, 588
HpyAV CCTTC 1 cut(s) 715
HpyCH4III ACNGT 1 cut(s) 779
HpyCH4V TGCA 2 cut(s) 494, 674
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 113, 425, 503
HpyF3I CTNAG 3 cut(s) 35, 142, 681
Hsp92II CATG 2 cut(s) 540, 769
HspAI GCGC 2 cut(s) 107, 401
Kzo9I GATC 1 cut(s) 510
LmnI GCTCC 5 cut(s) 97, 247, 425, 564, 583
Lsp1109I GCAGC 4 cut(s) 91, 493, 506, 709
LweI GCATC 2 cut(s) 412, 428
MaeI CTAG 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 55, 193
MalI GATC 1 cut(s) 512
MboI GATC 1 cut(s) 510
MboII GAAGA 2 cut(s) 353, 650
MluCI AATT 2 cut(s) 75, 367
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 541
MspA1I CMGCKG 1 cut(s) 722
MspCI CTTAAG 1 cut(s) 164
MspI CCGG 4 cut(s) 60, 177, 480, 738
MspR9I CCNGG 1 cut(s) 481
MwoI GCNNNNNNNGC 4 cut(s) 106, 113, 425, 503
NciI CCSGG 1 cut(s) 481
NdeII GATC 1 cut(s) 510
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 2 cut(s) 540, 769
NlaIV GGNNCC 5 cut(s) 32, 161, 188, 478, 484
NmuCI GTSAC 2 cut(s) 55, 193
NsbI TGCGCA 1 cut(s) 402
NspI RCATGY 1 cut(s) 540
PfeI GAWTC 1 cut(s) 374
PflMI CCANNNNNTGG 1 cut(s) 326
PfoI TCCNGGA 1 cut(s) 479
PkrI GCNGC 6 cut(s) 65, 88, 106, 496, 508, 724
PspN4I GGNNCC 5 cut(s) 32, 161, 188, 478, 484
PspPI GGNCC 3 cut(s) 30, 174, 483
PstNI CAGNNNCTG 1 cut(s) 680
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 4 cut(s) 83, 332, 587, 655
RsaNI GTAC 4 cut(s) 82, 331, 586, 654
RseI CAYNNNNRTG 1 cut(s) 541
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 6 cut(s) 64, 87, 105, 495, 507, 723
Sau3AI GATC 1 cut(s) 510
Sau96I GGNCC 3 cut(s) 30, 174, 483
ScrFI CCNGG 1 cut(s) 481
SfaNI GCATC 2 cut(s) 412, 428
SgrAI CRCCGGYG 1 cut(s) 59
SinI GGWCC 3 cut(s) 30, 174, 483
SmiMI CAYNNNNRTG 1 cut(s) 541
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 2 cut(s) 75, 367
SsiI CCGC 3 cut(s) 63, 87, 407
SspI AATATT 1 cut(s) 283
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 479
StyI CCWWGG 2 cut(s) 581, 696
TaaI ACNGT 1 cut(s) 779
TaqI TCGA 2 cut(s) 153, 218
TasI AATT 2 cut(s) 75, 367
TauI GCSGC 2 cut(s) 66, 89
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 2 cut(s) 96, 202
TseFI GTSAC 2 cut(s) 55, 193
TseI GCWGC 4 cut(s) 104, 494, 506, 722
Tsp45I GTSAC 2 cut(s) 55, 193
TspDTI ATGAA 3 cut(s) 433, 681, 717
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 2 cut(s) 96, 202
Van91I CCANNNNNTGG 1 cut(s) 326
Vha464I CTTAAG 1 cut(s) 164
VpaK11BI GGWCC 3 cut(s) 30, 174, 483
XceI RCATGY 1 cut(s) 540
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.