Prupe.2G239600_v2.0.a1

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011641
Physical Location & Seq
Forward (+)
25981655 .. 25984546
2892 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G239600.2

Sequence Viewer

Length: 816 bp
ATGGCCAAGGCAGAGAGCAGCCTCCCAAACTCCAGATGGTCTCTCAAAGGAATGACTGCCCTCGTCACCGGTGGCACTCGTGGAATTGGGTATGCCGTGGTGGAAGAGCTAGCTGGGTTTGGTGCGGCTGTGCACACTTGTTCTCGGAAAGAAGCAGAACTTCACAAGTGCTTAAAGGAATGGGAGGCTAAGGGCTTTCTGGTCACTGGGTCTGTTTGTGATGCCTCGTCTAAAACCGAGAGAGAAAAGCTCGTGCAGCAAGTGGCTTCTTCTTTCAATGGCAAGCTCAACATACTTGTAAACAATGTTGGGACAAACATCAGGAAGCCAACTACTGAGTACACTTCTGAAGAATATTCAATAGTCATGGCTACCAACTTAGAATCCACATACCATCTTTCCCAACTTGCACATCCTCTTTTGAGAGCATCTGGAGCAGGAAGCATTGTGTTTATATCCTCTGTTGCTGGCTTGGTGAGCATAGGCTCTGGGACCATTTATGCAGCAAGTAAAGCTGCAATTAATCAGCTTACAAAAAACCTGGCTTGTGAATGGGCAAAAGACAATATCAGGATCAATTCTGTATGCCCTTGGTATACCAGAACCTCACTTGTGGAACATTTGTTGGATAACAAGGAGTTTTTGGAAGAGATAACCTCACGTACCCCTATTGATCGTGTTGCAGAACCTGAGGAGGTCTCATCTCTGGTAGCCTTCCTCTGCCTACCTGCTGCTTCTTACATCACTGGACAGATTATTTCCGTTGATGGAGGAATGACTGCGAACAGTTTTAACCCCATTAGGCGGCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

272

Amino Acids

29.27

Weight (kDa)

6.96

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011641)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06060
fragaria_vesca FvH4_7g23050 FvH4_7g23050
malus_domestica MD01G1139100.v1.1
prunus_persica Prupe.2G239600_v2.0.a1 Prupe.2G239600_v2.0.a1 Prupe.2G239600_v2.0.a1
pyrus_communis pycom01g15970
rosa_chinensis RchiOBHm_Chr1g0368291
rosa_laevigata RLG00000027223
rosa_multiflora Rmu_sc0006033.1_g000017 Rmu_sc0009391.1_g000003
rosa_roxburghii Rroxscaffold_4G00288680
rosa_rugosa Rorug01G0339900
rosa_samantha Rh1AG347400 Rh1BG310400 Rh1CG325800 Rh1DG342200
rosa_wichuraiana Rw1G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 736
AccI GTMKAC 1 cut(s) 596
AciI CCGC 2 cut(s) 125, 805
AclWI GGATC 1 cut(s) 581
AcoI YGGCCR 2 cut(s) 3, 806
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 2 cut(s) 341, 664
AfiI CCNNNNNNNGG 1 cut(s) 804
AgeI ACCGGT 1 cut(s) 68
AgsI TTSAA 2 cut(s) 277, 360
AjnI CCWGG 1 cut(s) 540
AluBI AGCT 6 cut(s) 109, 113, 250, 286, 515, 529
AluI AGCT 6 cut(s) 109, 113, 250, 286, 515, 529
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 45, 703
Alw44I GTGCAC 1 cut(s) 131
AlwI GGATC 1 cut(s) 581
AlwNI CAGNNNCTG 1 cut(s) 689
AoxI GGCC 2 cut(s) 3, 806
ApaLI GTGCAC 1 cut(s) 131
ApeKI GCWGC 5 cut(s) 18, 256, 503, 515, 731
AseI ATTAAT 1 cut(s) 522
AsiGI ACCGGT 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 492
AsuHPI GGTGA 2 cut(s) 58, 487
AsuNHI GCTAGC 1 cut(s) 109
AvaII GGWCC 1 cut(s) 492
AxyI CCTNAGG 1 cut(s) 690
BaeGI GKGCMC 1 cut(s) 135
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 2 cut(s) 78, 251
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 5 cut(s) 30, 268, 502, 515, 718
BccI CCATC 3 cut(s) 30, 402, 761
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 542
BcoDI GTCTC 2 cut(s) 45, 703
BfaI CTAG 1 cut(s) 110
BfuAI ACCTGC 1 cut(s) 736
BisI GCNGC 7 cut(s) 19, 126, 257, 504, 516, 732, 806
BlsI GCNGC 7 cut(s) 20, 127, 258, 505, 517, 733, 807
Bme1390I CCNGG 1 cut(s) 542
Bme18I GGWCC 1 cut(s) 492
BmgT120I GGNCC 1 cut(s) 492
BmiI GGNNCC 1 cut(s) 493
BmrFI CCNGG 1 cut(s) 542
BmrI ACTGGG 1 cut(s) 216
BmsI GCATC 2 cut(s) 211, 437
BmtI GCTAGC 1 cut(s) 113
BmuI ACTGGG 1 cut(s) 216
BplI GAGNNNNNCTC 6 cut(s) 234, 266, 641, 673, 683, 715
BpmI CTGGAG 2 cut(s) 16, 453
Bpu10I CCTNAGC 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 662
BsaI GGTCTC 2 cut(s) 45, 703
BsaJI CCNNGG 3 cut(s) 6, 96, 590
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 804
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 211, 751
Bse21I CCTNAGG 1 cut(s) 690
BseBI CCWGG 1 cut(s) 542
BseDI CCNNGG 3 cut(s) 6, 96, 590
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 1 cut(s) 804
BseMII CTCAG 2 cut(s) 327, 681
BseNI ACTGG 2 cut(s) 211, 751
BseRI GAGGAG 1 cut(s) 707
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 5 cut(s) 30, 268, 502, 515, 718
BseYI CCCAGC 1 cut(s) 113
BsgI GTGCAG 1 cut(s) 275
BshFI GGCC 2 cut(s) 5, 808
BshTI ACCGGT 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 2 cut(s) 325, 505
BslI CCNNNNNNNGG 1 cut(s) 804
BsmAI GTCTC 2 cut(s) 45, 703
BsmFI GGGAC 2 cut(s) 325, 505
BsnI GGCC 2 cut(s) 5, 808
Bso31I GGTCTC 2 cut(s) 45, 703
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 2 cut(s) 573, 673
BspACI CCGC 2 cut(s) 125, 805
BspANI GGCC 2 cut(s) 5, 808
BspCNI CTCAG 2 cut(s) 328, 682
BspLI GGNNCC 1 cut(s) 493
BspMI ACCTGC 1 cut(s) 736
BspOI GCTAGC 1 cut(s) 113
BspPI GGATC 1 cut(s) 581
BspQI GCTCTTC 1 cut(s) 99
BspTNI GGTCTC 2 cut(s) 45, 703
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 2 cut(s) 211, 751
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 3 cut(s) 6, 96, 590
BssMI GATC 2 cut(s) 573, 673
BssNAI GTATAC 1 cut(s) 597
BssSI CACGAG 2 cut(s) 78, 251
BssT1I CCWWGG 2 cut(s) 6, 590
Bst1107I GTATAC 1 cut(s) 597
Bst2BI CACGAG 2 cut(s) 78, 251
Bst2UI CCWGG 1 cut(s) 542
Bst4CI ACNGT 1 cut(s) 788
Bst6I CTCTTC 2 cut(s) 99, 642
BstBAI YACGTR 1 cut(s) 662
BstC8I GCNNGC 3 cut(s) 111, 284, 469
BstDEI CTNAG 4 cut(s) 189, 336, 379, 690
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 2 cut(s) 576, 676
BstMAI GTCTC 2 cut(s) 45, 703
BstMBI GATC 2 cut(s) 573, 673
BstMWI GCNNNNNNNGC 4 cut(s) 256, 434, 477, 512
BstNI CCWGG 1 cut(s) 542
BstSCI CCNGG 1 cut(s) 540
BstSLI GKGCMC 1 cut(s) 135
BstV1I GCAGC 5 cut(s) 30, 268, 502, 515, 718
BstZ17I GTATAC 1 cut(s) 597
Bsu36I CCTNAGG 1 cut(s) 690
BsuRI GGCC 2 cut(s) 5, 808
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 204, 744
BveI ACCTGC 1 cut(s) 736
Cac8I GCNNGC 3 cut(s) 111, 284, 469
CaiI CAGNNNCTG 1 cut(s) 689
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 492
Csp6I GTAC 2 cut(s) 340, 663
CspAI ACCGGT 1 cut(s) 68
CviAII CATG 1 cut(s) 367
CviQI GTAC 2 cut(s) 340, 663
DdeI CTNAG 4 cut(s) 189, 336, 379, 690
DpnI GATC 2 cut(s) 575, 675
DpnII GATC 2 cut(s) 573, 673
EaeI YGGCCR 2 cut(s) 3, 806
Eam1104I CTCTTC 2 cut(s) 99, 642
EarI CTCTTC 2 cut(s) 99, 642
Eco130I CCWWGG 2 cut(s) 6, 590
Eco31I GGTCTC 2 cut(s) 45, 703
Eco47I GGWCC 1 cut(s) 492
Eco57I CTGAAG 1 cut(s) 369
Eco81I CCTNAGG 1 cut(s) 690
EcoRII CCWGG 1 cut(s) 540
EcoT14I CCWWGG 2 cut(s) 6, 590
ErhI CCWWGG 2 cut(s) 6, 590
FaeI CATG 1 cut(s) 370
FaiI YATR 9 cut(s) 93, 293, 368, 391, 455, 482, 501, 586, 597
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FaqI GGGAC 2 cut(s) 325, 505
FatI CATG 1 cut(s) 366
FblI GTMKAC 1 cut(s) 596
Fnu4HI GCNGC 7 cut(s) 19, 126, 257, 504, 516, 732, 806
FokI GGATG 1 cut(s) 399
Fsp4HI GCNGC 7 cut(s) 19, 126, 257, 504, 516, 732, 806
FspBI CTAG 1 cut(s) 110
GluI GCNGC 7 cut(s) 19, 126, 257, 504, 516, 732, 806
GsaI CCCAGC 1 cut(s) 117
GsuI CTGGAG 2 cut(s) 16, 453
HaeIII GGCC 2 cut(s) 5, 808
HapII CCGG 1 cut(s) 69
Hin1II CATG 1 cut(s) 370
HinfI GANTC 1 cut(s) 383
HpaII CCGG 1 cut(s) 69
HphI GGTGA 2 cut(s) 58, 487
Hpy166II GTNNAC 4 cut(s) 133, 301, 342, 597
Hpy188I TCNGA 2 cut(s) 147, 349
Hpy188III TCNNGA 4 cut(s) 33, 322, 432, 571
Hpy8I GTNNAC 4 cut(s) 133, 301, 342, 597
HpyAV CCTTC 1 cut(s) 724
HpyCH4III ACNGT 1 cut(s) 788
HpyCH4IV ACGT 1 cut(s) 661
HpyCH4V TGCA 6 cut(s) 133, 256, 410, 503, 518, 683
HpyF10VI GCNNNNNNNGC 4 cut(s) 256, 434, 477, 512
HpyF3I CTNAG 4 cut(s) 189, 336, 379, 690
HpySE526I ACGT 1 cut(s) 661
Hsp92II CATG 1 cut(s) 370
Kzo9I GATC 2 cut(s) 573, 673
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 5 cut(s) 30, 268, 502, 515, 718
LweI GCATC 2 cut(s) 211, 437
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 661
MaeIII GTNAC 2 cut(s) 64, 202
MalI GATC 2 cut(s) 575, 675
MboI GATC 2 cut(s) 573, 673
MboII GAAGA 4 cut(s) 116, 261, 362, 659
MhlI GDGCHC 1 cut(s) 135
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 84, 519, 577
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 606
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 173, 522, 792
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 542
MvaI CCWGG 1 cut(s) 542
MwoI GCNNNNNNNGC 4 cut(s) 256, 434, 477, 512
NdeII GATC 2 cut(s) 573, 673
NheI GCTAGC 1 cut(s) 109
NlaIII CATG 1 cut(s) 370
NlaIV GGNNCC 1 cut(s) 493
NmuCI GTSAC 2 cut(s) 64, 202
PciSI GCTCTTC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 383
PinAI ACCGGT 1 cut(s) 68
PkrI GCNGC 7 cut(s) 20, 127, 258, 505, 517, 733, 807
Ppu21I YACGTR 1 cut(s) 662
PshBI ATTAAT 1 cut(s) 522
Psp6I CCWGG 1 cut(s) 540
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 540
PspN4I GGNNCC 1 cut(s) 493
PspPI GGNCC 1 cut(s) 492
PstNI CAGNNNCTG 1 cut(s) 689
RsaI GTAC 2 cut(s) 341, 664
RsaNI GTAC 2 cut(s) 340, 663
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 3 cut(s) 173, 522, 792
SatI GCNGC 7 cut(s) 19, 126, 257, 504, 516, 732, 806
Sau3AI GATC 2 cut(s) 573, 673
Sau96I GGNCC 1 cut(s) 492
ScrFI CCNGG 1 cut(s) 542
SduI GDGCHC 1 cut(s) 135
SfaNI GCATC 2 cut(s) 211, 437
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 1 cut(s) 492
Sse9I AATT 3 cut(s) 84, 519, 577
SsiI CCGC 2 cut(s) 125, 805
SspI AATATT 1 cut(s) 356
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 2 cut(s) 6, 590
TaaI ACNGT 1 cut(s) 788
TaiI ACGT 1 cut(s) 664
TasI AATT 3 cut(s) 84, 519, 577
TatI WGTACW 1 cut(s) 339
TauI GCSGC 2 cut(s) 128, 808
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 3 cut(s) 173, 522, 792
Tru9I TTAA 3 cut(s) 173, 522, 792
TscAI CASTG 2 cut(s) 211, 751
TseFI GTSAC 2 cut(s) 64, 202
TseI GCWGC 5 cut(s) 18, 256, 503, 515, 731
Tsp45I GTSAC 2 cut(s) 64, 202
TspGWI ACGGA 1 cut(s) 751
TspRI CASTG 2 cut(s) 211, 751
VneI GTGCAC 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 492
VspI ATTAAT 1 cut(s) 522
XcmI CCANNNNNNNNNTGG 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 596
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.