pycom01g15970

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0011641
Physical Location & Seq
Forward (+)
15702763 .. 15705508
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g15970.2

Sequence Viewer

Length: 816 bp
ATGGCCAAGGCAGAGAGCAATTACCCAAACGCCAGATGGTCTCTCCACGGCGGGGCTGCCCTCGTCACCGGCGGAACTCGTGGAATTGGGTACGCCGTGGTGGAGGAGCTAGCTGGGTTCGGCGCGGCGGTGCACACCTGTTCTCGAAACGAAGCAGAACTCTCCAAGTGCTTGGAGCAATGGAAGGCTAAGGGCTTTTCAGTCACTGGGTCAGTCTGCGACACTTCTTCTACAACCGAGAGAGAAAAGCTCATGGACCAAGTCGCTTCCACTTTCAATGGCAAGCTCAACATACTTGTAAACAATGTTGGGACTAACATCAGGAAGCCAACCACTGAGTACGCTTCTGAAGAATATTCATTACTCATGGCTACCAACTTAGAATCTACGTACCATCTTTCCCAACTGGCACATCCTCTTTTGAAATCATCTGGGCGAGGAAGCATTGTGTTTATATCCTCTGTTGCCGGGGTGGCCAGTATAGCTTCCGGGTCCATTTATGGAGCAAGTAAAGCTGCAATCAATCAGCTTACGAAAAATCTGGCTTGTGAGTGGGCGAAAGACAATATCAGGAGCAATGCTGTCTGCCCTTGGTACACTAGAACCTCACTTGTGGAACATTTGCTGAATAACAAGGAGTTTTTGGAAGAGATAACGTCGCGAACTCCGCTTGAGCGCGTTGCAGAGCCGGAGGAGGTGTCATCTCTGGTGGCGTTCCTTTGCCTGCCCGCCGCATCGTACATCACCGGGCAGGTTATTTCTGTTGATGGAGGAATGACTGTAAACAGTTTCAACCCTACTAGGCGGCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

272

Amino Acids

29.15

Weight (kDa)

6.53

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011641)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06060
fragaria_vesca FvH4_7g23050 FvH4_7g23050
malus_domestica MD01G1139100.v1.1
prunus_persica Prupe.2G239600_v2.0.a1 Prupe.2G239600_v2.0.a1 Prupe.2G239600_v2.0.a1
pyrus_communis pycom01g15970
rosa_chinensis RchiOBHm_Chr1g0368291
rosa_laevigata RLG00000027223
rosa_multiflora Rmu_sc0006033.1_g000017 Rmu_sc0009391.1_g000003
rosa_roxburghii Rroxscaffold_4G00288680
rosa_rugosa Rorug01G0339900
rosa_samantha Rh1AG347400 Rh1BG310400 Rh1CG325800 Rh1DG342200
rosa_wichuraiana Rw1G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 742
AccII CGCG 3 cut(s) 125, 661, 678
AciI CCGC 8 cut(s) 51, 72, 125, 128, 668, 729, 732, 805
AcoI YGGCCR 3 cut(s) 3, 474, 806
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 5 cut(s) 92, 341, 392, 596, 740
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 3 cut(s) 277, 424, 793
AluBI AGCT 7 cut(s) 109, 113, 250, 286, 485, 515, 529
AluI AGCT 7 cut(s) 109, 113, 250, 286, 485, 515, 529
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 45
Alw44I GTGCAC 1 cut(s) 131
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 3 cut(s) 3, 474, 806
ApaLI GTGCAC 1 cut(s) 131
ApeKI GCWGC 2 cut(s) 56, 515
AspLEI GCGC 2 cut(s) 125, 678
AspS9I GGNCC 2 cut(s) 256, 492
AsuC2I CCSGG 3 cut(s) 469, 490, 748
AsuHPI GGTGA 2 cut(s) 58, 736
AsuNHI GCTAGC 1 cut(s) 109
AvaII GGWCC 2 cut(s) 256, 492
BaeGI GKGCMC 1 cut(s) 135
BalI TGGCCA 2 cut(s) 5, 476
BauI CACGAG 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 43, 502
BccI CCATC 3 cut(s) 30, 402, 761
BceAI ACGGC 2 cut(s) 64, 80
BcnI CCSGG 3 cut(s) 469, 490, 748
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 3 cut(s) 110, 600, 801
BfuAI ACCTGC 1 cut(s) 742
BglI GCCNNNNNGGC 1 cut(s) 473
BisI GCNGC 5 cut(s) 57, 126, 516, 732, 806
BlsI GCNGC 5 cut(s) 58, 127, 517, 733, 807
Bme1390I CCNGG 3 cut(s) 469, 490, 748
Bme18I GGWCC 2 cut(s) 256, 492
BmgT120I GGNCC 2 cut(s) 256, 492
BmiI GGNNCC 1 cut(s) 493
BmrFI CCNGG 3 cut(s) 469, 490, 748
BmrI ACTGGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 743
BmtI GCTAGC 1 cut(s) 113
BmuI ACTGGG 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 234, 266
Bpu10I CCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 692
BpuMI CCSGG 3 cut(s) 469, 490, 748
BsaAI YACGTR 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 5 cut(s) 6, 46, 96, 468, 590
BsaXI ACNNNNNCTCC 2 cut(s) 683, 713
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 3 cut(s) 211, 411, 477
Bse3DI GCAATG 2 cut(s) 185, 583
BseDI CCNNGG 5 cut(s) 6, 46, 96, 468, 590
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 2 cut(s) 185, 583
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 3 cut(s) 211, 411, 477
BseRI GAGGAG 2 cut(s) 119, 707
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 2 cut(s) 43, 502
BseYI CCCAGC 1 cut(s) 113
Bsh1236I CGCG 3 cut(s) 125, 661, 678
BshFI GGCC 3 cut(s) 5, 476, 808
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 5 cut(s) 69, 468, 489, 689, 747
BslFI GGGAC 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 325
BsnI GGCC 3 cut(s) 5, 476, 808
Bso31I GGTCTC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 135
Bsp68I TCGCGA 1 cut(s) 661
BspACI CCGC 8 cut(s) 51, 72, 125, 128, 668, 729, 732, 805
BspANI GGCC 3 cut(s) 5, 476, 808
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 3 cut(s) 125, 661, 678
BspLI GGNNCC 1 cut(s) 493
BspMI ACCTGC 1 cut(s) 742
BspOI GCTAGC 1 cut(s) 113
BspTNI GGTCTC 1 cut(s) 45
BsrDI GCAATG 2 cut(s) 185, 583
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 3 cut(s) 211, 411, 477
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 5 cut(s) 6, 46, 96, 468, 590
BssSI CACGAG 1 cut(s) 78
BssT1I CCWWGG 2 cut(s) 6, 590
Bst2BI CACGAG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 781, 788
Bst6I CTCTTC 1 cut(s) 642
BstBAI YACGTR 1 cut(s) 390
BstC8I GCNNGC 4 cut(s) 111, 284, 725, 729
BstDEI CTNAG 3 cut(s) 189, 336, 379
BstDSI CCRYGG 2 cut(s) 46, 96
BstF5I GGATG 1 cut(s) 412
BstFNI CGCG 3 cut(s) 125, 661, 678
BstHHI GCGC 2 cut(s) 125, 678
BstMAI GTCTC 1 cut(s) 45
BstMWI GCNNNNNNNGC 4 cut(s) 473, 482, 512, 667
BstSCI CCNGG 3 cut(s) 467, 488, 746
BstSLI GKGCMC 1 cut(s) 135
BstSNI TACGTA 1 cut(s) 390
BstUI CGCG 3 cut(s) 125, 661, 678
BstV1I GCAGC 2 cut(s) 43, 502
BstXI CCANNNNNNTGG 1 cut(s) 172
BsuRI GGCC 3 cut(s) 5, 476, 808
BtgI CCRYGG 2 cut(s) 46, 96
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 204, 333
BtuMI TCGCGA 1 cut(s) 661
BveI ACCTGC 1 cut(s) 742
Cac8I GCNNGC 4 cut(s) 111, 284, 725, 729
CaiI CAGNNNCTG 1 cut(s) 206
CfoI GCGC 2 cut(s) 125, 678
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 256, 492
Csp6I GTAC 5 cut(s) 91, 340, 391, 595, 739
CviAII CATG 2 cut(s) 253, 367
CviQI GTAC 5 cut(s) 91, 340, 391, 595, 739
DdeI CTNAG 3 cut(s) 189, 336, 379
EaeI YGGCCR 3 cut(s) 3, 474, 806
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
EciI GGCGGA 1 cut(s) 87
Eco105I TACGTA 1 cut(s) 390
Eco130I CCWWGG 2 cut(s) 6, 590
Eco31I GGTCTC 1 cut(s) 45
Eco47I GGWCC 2 cut(s) 256, 492
Eco57I CTGAAG 1 cut(s) 369
EcoT14I CCWWGG 2 cut(s) 6, 590
ErhI CCWWGG 2 cut(s) 6, 590
FaeI CATG 2 cut(s) 256, 370
FaiI YATR 6 cut(s) 254, 293, 368, 455, 482, 501
FaqI GGGAC 1 cut(s) 325
FatI CATG 2 cut(s) 252, 366
FauI CCCGC 2 cut(s) 44, 736
Fnu4HI GCNGC 5 cut(s) 57, 126, 516, 732, 806
FokI GGATG 1 cut(s) 399
Fsp4HI GCNGC 5 cut(s) 57, 126, 516, 732, 806
FspBI CTAG 3 cut(s) 110, 600, 801
GlaI GCGC 2 cut(s) 124, 677
GluI GCNGC 5 cut(s) 57, 126, 516, 732, 806
GsaI CCCAGC 1 cut(s) 117
HaeIII GGCC 3 cut(s) 5, 476, 808
HapII CCGG 5 cut(s) 69, 468, 489, 689, 747
HhaI GCGC 2 cut(s) 125, 678
Hin1II CATG 2 cut(s) 256, 370
Hin6I GCGC 2 cut(s) 123, 676
HinP1I GCGC 2 cut(s) 123, 676
HinfI GANTC 1 cut(s) 383
HpaII CCGG 5 cut(s) 69, 468, 489, 689, 747
HphI GGTGA 2 cut(s) 58, 736
Hpy166II GTNNAC 4 cut(s) 133, 301, 597, 784
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 4 cut(s) 144, 322, 571, 660
Hpy8I GTNNAC 4 cut(s) 133, 301, 597, 784
Hpy99I CGWCG 1 cut(s) 661
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 781, 788
HpyCH4IV ACGT 2 cut(s) 389, 656
HpyCH4V TGCA 3 cut(s) 133, 518, 683
HpyF10VI GCNNNNNNNGC 4 cut(s) 473, 482, 512, 667
HpyF3I CTNAG 3 cut(s) 189, 336, 379
HpySE526I ACGT 2 cut(s) 389, 656
Hsp92II CATG 2 cut(s) 256, 370
HspAI GCGC 2 cut(s) 123, 676
LmnI GCTCC 4 cut(s) 106, 175, 503, 573
Lsp1109I GCAGC 2 cut(s) 43, 502
LweI GCATC 1 cut(s) 743
MaeI CTAG 3 cut(s) 110, 600, 801
MaeII ACGT 2 cut(s) 389, 656
MaeIII GTNAC 2 cut(s) 64, 202
MboII GAAGA 3 cut(s) 219, 362, 659
MhlI GDGCHC 1 cut(s) 135
MlsI TGGCCA 2 cut(s) 5, 476
MluCI AATT 2 cut(s) 19, 84
MluNI TGGCCA 2 cut(s) 5, 476
MnlI CCTC 9 cut(s) 71, 97, 426, 431, 469, 616, 685, 688, 764
Mox20I TGGCCA 2 cut(s) 5, 476
MscI TGGCCA 2 cut(s) 5, 476
Msp20I TGGCCA 2 cut(s) 5, 476
MspI CCGG 5 cut(s) 69, 468, 489, 689, 747
MspR9I CCNGG 3 cut(s) 469, 490, 748
MvnI CGCG 3 cut(s) 125, 661, 678
MwoI GCNNNNNNNGC 4 cut(s) 473, 482, 512, 667
NciI CCSGG 3 cut(s) 469, 490, 748
NheI GCTAGC 1 cut(s) 109
NlaIII CATG 2 cut(s) 256, 370
NlaIV GGNNCC 1 cut(s) 493
NmuCI GTSAC 2 cut(s) 64, 202
NruI TCGCGA 1 cut(s) 661
PfeI GAWTC 1 cut(s) 383
PflFI GACNNNGTC 1 cut(s) 260
PkrI GCNGC 5 cut(s) 58, 127, 517, 733, 807
Ppu21I YACGTR 1 cut(s) 390
PspFI CCCAGC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 493
PspPI GGNCC 2 cut(s) 256, 492
PstNI CAGNNNCTG 1 cut(s) 206
PsyI GACNNNGTC 1 cut(s) 260
RruI TCGCGA 1 cut(s) 661
RsaI GTAC 5 cut(s) 92, 341, 392, 596, 740
RsaNI GTAC 5 cut(s) 91, 340, 391, 595, 739
SatI GCNGC 5 cut(s) 57, 126, 516, 732, 806
Sau96I GGNCC 2 cut(s) 256, 492
ScrFI CCNGG 3 cut(s) 469, 490, 748
SduI GDGCHC 1 cut(s) 135
SfaNI GCATC 1 cut(s) 743
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 2 cut(s) 256, 492
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
SnaBI TACGTA 1 cut(s) 390
Sse9I AATT 2 cut(s) 19, 84
SsiI CCGC 8 cut(s) 51, 72, 125, 128, 668, 729, 732, 805
SspI AATATT 1 cut(s) 356
SspMI CTAG 3 cut(s) 110, 600, 801
StyD4I CCNGG 3 cut(s) 467, 488, 746
StyI CCWWGG 2 cut(s) 6, 590
TaaI ACNGT 2 cut(s) 781, 788
TaiI ACGT 2 cut(s) 392, 659
TaqI TCGA 1 cut(s) 145
TasI AATT 2 cut(s) 19, 84
TauI GCSGC 3 cut(s) 128, 734, 808
TfiI GAWTC 1 cut(s) 383
TscAI CASTG 2 cut(s) 211, 340
TseFI GTSAC 2 cut(s) 64, 202
TseI GCWGC 2 cut(s) 56, 515
Tsp45I GTSAC 2 cut(s) 64, 202
TspDTI ATGAA 1 cut(s) 348
TspRI CASTG 2 cut(s) 211, 340
Tth111I GACNNNGTC 1 cut(s) 260
VneI GTGCAC 1 cut(s) 131
VpaK11BI GGWCC 2 cut(s) 256, 492
XcmI CCANNNNNNNNNTGG 1 cut(s) 33
XspI CTAG 3 cut(s) 110, 600, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.