FvH4_7g23590

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011683
Physical Location & Seq
Forward (+)
18365962 .. 18366824
863 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23590.t1

Sequence Viewer

Length: 462 bp
ATGGATCAGAACAAGAAGCAAGTCGGTGCCCCAAGCCATAGCCATGGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAACAACCACGAACCTTGACCATCTCTTTGGTCCTAGGGACTCGTCGACGTCTTCAGCTTCTTCATCTCTGTTCAGCACTATTTTCCCACCACCCTCATCCACGGGACCAGGGAGAGATAGAATTTCTGGTAATGCTACTCGAGGCAGCAGCAAGAGTTCTGTGTATCAGAATAACGAAGGTACGGATCCGCCTTGCAACTTTAACTCGTCAATCTACTACGGCGGCCAAGAAAACTATAATGTACCGAAAAGTGGGAGTACATACGAATCCAAGAATCACCAGCATAACTTTAAGAAAGATGGGGGTGATGATGACGAATCGAGTGGAAGTAATTCAAACAGTACTTCAAGAGGAAACTGGTGGAAGGGGTCACTTTATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.28

Weight (kDa)

6.96

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011683)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39855 AT2G39855 AT2G39855 AT2G39855 AT2G39855 AT3G55646
fragaria_vesca FvH4_7g23590
malus_domestica MD01G1141700.v1.1 MD07G1207300.v1.1
prunus_persica Prupe.2G242500_v2.0.a1 Prupe.2G242500_v2.0.a1
pyrus_communis pycom01g16200
rosa_chinensis RchiOBHm_Chr1g0368821
rosa_laevigata RLG00000027188
rosa_roxburghii Rroxscaffold_4G00288270
rosa_rugosa Rorug01G0345000
rosa_samantha Rh1BG315700 Rh1CG330400 Rh1DG347200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 26
AccI GTMKAC 1 cut(s) 122
AciI CCGC 2 cut(s) 266, 300
AclWI GGATC 3 cut(s) 12, 257, 270
AcoI YGGCCR 1 cut(s) 301
AcsI RAATTY 1 cut(s) 198
AcuI CTGAAG 1 cut(s) 114
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 4 cut(s) 259, 321, 337, 421
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 3 cut(s) 78, 414, 426
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
AlwI GGATC 3 cut(s) 12, 257, 270
Ama87I CYCGRG 1 cut(s) 216
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 2 cut(s) 222, 225
ApoI RAATTY 1 cut(s) 198
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp700I GAANNNNTTC 1 cut(s) 409
AspA2I CCTAGG 1 cut(s) 110
AspS9I GGNCC 2 cut(s) 107, 182
AsuHPI GGTGA 2 cut(s) 347, 395
AvaI CYCGRG 1 cut(s) 216
AvaII GGWCC 2 cut(s) 107, 182
AvrII CCTAGG 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 31
BamHI GGATCC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 234, 237
BccI CCATC 2 cut(s) 105, 371
BceAI ACGGC 1 cut(s) 313
BciT130I CCWGG 1 cut(s) 186
BfaI CTAG 1 cut(s) 111
BisI GCNGC 3 cut(s) 223, 226, 301
BlnI CCTAGG 1 cut(s) 110
BlsI GCNGC 3 cut(s) 224, 227, 302
BmcAI AGTACT 1 cut(s) 421
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 2 cut(s) 107, 182
BmeT110I CYCGRG 1 cut(s) 216
BmgT120I GGNCC 2 cut(s) 107, 182
BmiI GGNNCC 3 cut(s) 28, 183, 264
BmrFI CCNGG 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 120
BsaHI GRCGYC 1 cut(s) 125
BsaJI CCNNGG 4 cut(s) 43, 110, 177, 185
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 440
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 4 cut(s) 43, 110, 177, 185
BseGI GGATG 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 440
BseSI GKGCMC 1 cut(s) 31
BseXI GCAGC 2 cut(s) 234, 237
BshFI GGCC 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 216
BslFI GGGAC 2 cut(s) 128, 195
BslI CCNNNNNNNGG 1 cut(s) 329
BsmFI GGGAC 2 cut(s) 128, 195
BsnI GGCC 1 cut(s) 303
BsoBI CYCGRG 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 2 cut(s) 4, 262
Bsp19I CCATGG 1 cut(s) 43
BspACI CCGC 2 cut(s) 266, 300
BspANI GGCC 1 cut(s) 303
BspLI GGNNCC 3 cut(s) 28, 183, 264
BspPI GGATC 3 cut(s) 12, 257, 270
BspQI GCTCTTC 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 26
BsrI ACTGG 1 cut(s) 440
BssECI CCNNGG 4 cut(s) 43, 110, 177, 185
BssMI GATC 2 cut(s) 4, 262
BssNI GRCGYC 1 cut(s) 125
BssT1I CCWWGG 2 cut(s) 43, 110
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 419
Bst6I CTCTTC 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 125
BstDSI CCRYGG 2 cut(s) 43, 177
BstF5I GGATG 1 cut(s) 173
BstKTI GATC 2 cut(s) 7, 265
BstMBI GATC 2 cut(s) 4, 262
BstNI CCWGG 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 31
BstV1I GCAGC 2 cut(s) 234, 237
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 262
BstXI CCANNNNNNTGG 2 cut(s) 44, 104
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 1 cut(s) 303
BtgI CCRYGG 2 cut(s) 43, 177
BtsCI GGATG 1 cut(s) 173
Cfr13I GGNCC 2 cut(s) 107, 182
Csp6I GTAC 4 cut(s) 258, 320, 336, 420
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 1 cut(s) 44
CviJI RGCY 5 cut(s) 36, 42, 48, 134, 303
CviKI_1 RGCY 5 cut(s) 36, 42, 48, 134, 303
CviQI GTAC 4 cut(s) 258, 320, 336, 420
DpnI GATC 2 cut(s) 6, 264
DpnII GATC 2 cut(s) 4, 262
EaeI YGGCCR 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
EciI GGCGGA 1 cut(s) 255
Eco130I CCWWGG 2 cut(s) 43, 110
Eco47I GGWCC 2 cut(s) 107, 182
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 2 cut(s) 43, 110
ErhI CCWWGG 2 cut(s) 43, 110
FaeI CATG 1 cut(s) 47
FaiI YATR 5 cut(s) 39, 45, 315, 340, 363
FaqI GGGAC 2 cut(s) 128, 195
FatI CATG 1 cut(s) 43
FblI GTMKAC 1 cut(s) 122
Fnu4HI GCNGC 3 cut(s) 223, 226, 301
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 3 cut(s) 223, 226, 301
FspBI CTAG 1 cut(s) 111
GluI GCNGC 3 cut(s) 223, 226, 301
HaeIII GGCC 1 cut(s) 303
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 1 cut(s) 47
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HinfI GANTC 4 cut(s) 116, 344, 352, 395
HphI GGTGA 2 cut(s) 347, 395
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 2 cut(s) 9, 246
Hpy188III TCNNGA 1 cut(s) 426
Hpy8I GTNNAC 1 cut(s) 123
Hpy99I CGWCG 2 cut(s) 124, 127
HpyAV CCTTC 2 cut(s) 248, 436
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 125
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 1 cut(s) 47
Kzo9I GATC 2 cut(s) 4, 262
LguI GCTCTTC 1 cut(s) 55
LpnPI CCDG 5 cut(s) 171, 189, 198, 371, 421
Lsp1109I GCAGC 2 cut(s) 234, 237
MaeI CTAG 1 cut(s) 111
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 447
MalI GATC 2 cut(s) 6, 264
MboI GATC 2 cut(s) 4, 262
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 2 cut(s) 198, 409
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 3 cut(s) 181, 212, 422
MroXI GAANNNNTTC 1 cut(s) 409
MseI TTAA 2 cut(s) 279, 369
MslI CAYNNNNRTG 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 186
NcoI CCATGG 1 cut(s) 43
NdeII GATC 2 cut(s) 4, 262
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 3 cut(s) 28, 183, 264
NmuCI GTSAC 1 cut(s) 447
PaeR7I CTCGAG 1 cut(s) 216
PciSI GCTCTTC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 409
PfeI GAWTC 3 cut(s) 344, 352, 395
PkrI GCNGC 3 cut(s) 224, 227, 302
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 3 cut(s) 28, 183, 264
PspPI GGNCC 2 cut(s) 107, 182
PspXI VCTCGAGB 1 cut(s) 216
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 4 cut(s) 259, 321, 337, 421
RsaNI GTAC 4 cut(s) 258, 320, 336, 420
RseI CAYNNNNRTG 1 cut(s) 42
SalI GTCGAC 1 cut(s) 121
SapI GCTCTTC 1 cut(s) 55
SaqAI TTAA 2 cut(s) 279, 369
SatI GCNGC 3 cut(s) 223, 226, 301
Sau3AI GATC 2 cut(s) 4, 262
Sau96I GGNCC 2 cut(s) 107, 182
ScaI AGTACT 1 cut(s) 421
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 1 cut(s) 31
SetI ASST 4 cut(s) 93, 128, 136, 259
Sfr274I CTCGAG 1 cut(s) 216
SgrDI CGTCGACG 1 cut(s) 121
SinI GGWCC 2 cut(s) 107, 182
SlaI CTCGAG 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 2 cut(s) 198, 409
SsiI CCGC 2 cut(s) 266, 300
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 2 cut(s) 43, 110
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 1 cut(s) 128
TaqI TCGA 3 cut(s) 122, 217, 398
TasI AATT 2 cut(s) 198, 409
TatI WGTACW 2 cut(s) 335, 419
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 3 cut(s) 344, 352, 395
Tru1I TTAA 2 cut(s) 279, 369
Tru9I TTAA 2 cut(s) 279, 369
TseFI GTSAC 1 cut(s) 447
TseI GCWGC 2 cut(s) 222, 225
Tsp45I GTSAC 1 cut(s) 447
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 275
VpaK11BI GGWCC 2 cut(s) 107, 182
XapI RAATTY 1 cut(s) 198
XhoI CTCGAG 1 cut(s) 216
XmaJI CCTAGG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 409
XspI CTAG 1 cut(s) 111
ZraI GACGTC 1 cut(s) 126
ZrmI AGTACT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.