Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011683

Physical Location & Seq

Genomic Coordinates Forward (+)

28650056 .. 28651782

Gene Structure 1727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1207300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGAACAACAAGAAAGTGGGAAGTGGTGCAAGCCATGGCTCTTCTTCTCCATCAGCAAGGAATCTGGACCATCTCTTTGGTCCCAAGGACTCCTCTTCATCTTCTTCTTCATCATCCTCCTCGGGATTATTTGGCTCTCTTTTCCCACCAGTCCCATCAACGGGAGCCGGGAGGGAGAGAAGGCAGGGCTTAGGAGATCAAGCTGGGAAGTATGGGAGTCCATGTTTTTCGGATAATAAGGGTGAAAGCAAAACCAGCAAAGCTTCCAATATGTATCAAAACGAAGCTGTGGAGCCATGCAACTTCAGTTCATCAATCTACTATGGCAGCCGAGAGAATTATAGTCCAAGAACTGGGACAACTGAATCCCACCAGCACCATACTTCTAAGAAAGATGGTGGCGAGGACGATGCAAATGGGAATAATGCAAACAGTGTTTCAAGAGGAAACTGGTGGCAGGGTATGATCTGTATCTGTGGGCTTTTTACTTATCTTCGCCGGATCCTTTATTTAGAAATCCTAAAAATTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.12

Weight (kDa)

8.67

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39855 AT2G39855 AT2G39855 AT2G39855 AT2G39855 AT3G55646
fragaria_vesca	FvH4_7g23590
malus_domestica	MD01G1141700.v1.1 MD07G1207300.v1.1
prunus_persica	Prupe.2G242500_v2.0.a1 Prupe.2G242500_v2.0.a1
pyrus_communis	pycom01g16200
rosa_chinensis	RchiOBHm_Chr1g0368821
rosa_laevigata	RLG00000027188
rosa_roxburghii	Rroxscaffold_4G00288270
rosa_rugosa	Rorug01G0345000
rosa_samantha	Rh1BG315700 Rh1CG330400 Rh1DG347200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	356
AclWI	GGATC	2 cut(s)	499, 512
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	292
AfiI	CCNNNNNNNGG	3 cut(s)	163, 164, 356
AgsI	TTSAA	1 cut(s)	444
AluBI	AGCT	3 cut(s)	206, 266, 290
AluI	AGCT	3 cut(s)	206, 266, 290
AlwI	GGATC	2 cut(s)	499, 512
Ama87I	CYCGRG	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	330
ApoI	RAATTY	1 cut(s)	528
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspS9I	GGNCC	2 cut(s)	70, 83
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	124
AvaII	GGWCC	2 cut(s)	70, 83
BamHI	GGATCC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	4 cut(s)	61, 81, 166, 392
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BcnI	CCSGG	1 cut(s)	172
BisI	GCNGC	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	332
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	2 cut(s)	70, 83
BmeT110I	CYCGRG	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	70, 83
BmiI	GGNNCC	4 cut(s)	85, 169, 297, 506
BmrFI	CCNGG	1 cut(s)	172
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	403
BmuI	ACTGGG	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	193
BpuMI	CCSGG	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	473
BsaJI	CCNNGG	3 cut(s)	37, 87, 123
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 164, 356
Bse1I	ACTGG	3 cut(s)	152, 361, 458
Bse8I	GATNNNNATC	1 cut(s)	473
BseDI	CCNNGG	3 cut(s)	37, 87, 123
BseGI	GGATG	1 cut(s)	116
BseJI	GATNNNNATC	1 cut(s)	473
BseLI	CCNNNNNNNGG	3 cut(s)	163, 164, 356
BseNI	ACTGG	3 cut(s)	152, 361, 458
BseRI	GAGGAG	2 cut(s)	85, 112
BseXI	GCAGC	1 cut(s)	342
BseYI	CCCAGC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	171, 502
BslFI	GGGAC	3 cut(s)	69, 140, 373
BslI	CCNNNNNNNGG	3 cut(s)	163, 164, 356
BsmFI	GGGAC	3 cut(s)	69, 140, 373
BsoBI	CYCGRG	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	199, 468, 504
Bsp19I	CCATGG	1 cut(s)	37
BspLI	GGNNCC	4 cut(s)	85, 169, 297, 506
BspPI	GGATC	2 cut(s)	499, 512
BspQI	GCTCTTC	1 cut(s)	49
BsrI	ACTGG	3 cut(s)	152, 361, 458
BssECI	CCNNGG	3 cut(s)	37, 87, 123
BssMI	GATC	3 cut(s)	199, 468, 504
BssT1I	CCWWGG	2 cut(s)	37, 87
Bst4CI	ACNGT	1 cut(s)	437
Bst6I	CTCTTC	2 cut(s)	49, 103
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	193, 390
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	116
BstKTI	GATC	3 cut(s)	202, 471, 507
BstMBI	GATC	3 cut(s)	199, 468, 504
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	170
BstV1I	GCAGC	1 cut(s)	342
BstX2I	RGATCY	1 cut(s)	504
BstXI	CCANNNNNNTGG	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	504
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	34
Cfr13I	GGNCC	2 cut(s)	70, 83
CviAII	CATG	3 cut(s)	38, 225, 300
DdeI	CTNAG	2 cut(s)	193, 390
DpnI	GATC	3 cut(s)	201, 470, 506
DpnII	GATC	3 cut(s)	199, 468, 504
Eam1104I	CTCTTC	2 cut(s)	49, 103
EarI	CTCTTC	2 cut(s)	49, 103
Eco130I	CCWWGG	2 cut(s)	37, 87
Eco47I	GGWCC	2 cut(s)	70, 83
Eco57I	CTGAAG	1 cut(s)	292
Eco88I	CYCGRG	1 cut(s)	124
EcoT14I	CCWWGG	2 cut(s)	37, 87
ErhI	CCWWGG	2 cut(s)	37, 87
FaeI	CATG	3 cut(s)	41, 228, 303
FaiI	YATR	9 cut(s)	39, 216, 226, 275, 301, 327, 345, 384, 467
FaqI	GGGAC	3 cut(s)	69, 140, 373
FatI	CATG	3 cut(s)	37, 224, 299
Fnu4HI	GCNGC	1 cut(s)	331
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	1 cut(s)	331
GluI	GCNGC	1 cut(s)	331
GsaI	CCCAGC	1 cut(s)	210
HapII	CCGG	2 cut(s)	171, 502
Hin1II	CATG	3 cut(s)	41, 228, 303
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	4 cut(s)	64, 92, 220, 368
HpaII	CCGG	2 cut(s)	171, 502
HphI	GGTGA	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	3 cut(s)	68, 126, 444
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4V	TGCA	4 cut(s)	32, 303, 416, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	2 cut(s)	193, 390
Hsp92II	CATG	3 cut(s)	41, 228, 303
Kzo9I	GATC	3 cut(s)	199, 468, 504
LguI	GCTCTTC	1 cut(s)	49
LmnI	GCTCC	2 cut(s)	167, 295
Lsp1109I	GCAGC	1 cut(s)	342
LweI	GCATC	1 cut(s)	403
MalI	GATC	3 cut(s)	201, 470, 506
MboI	GATC	3 cut(s)	199, 468, 504
MboII	GAAGA	7 cut(s)	36, 39, 90, 96, 99, 102, 488
MflI	RGATCY	1 cut(s)	504
MluCI	AATT	2 cut(s)	340, 528
MlyI	GAGTC	2 cut(s)	86, 229
MnlI	CCTC	6 cut(s)	106, 130, 133, 168, 400, 440
MspI	CCGG	2 cut(s)	171, 502
MspR9I	CCNGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	258
NciI	CCSGG	1 cut(s)	172
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	3 cut(s)	199, 468, 504
NlaIII	CATG	3 cut(s)	41, 228, 303
NlaIV	GGNNCC	4 cut(s)	85, 169, 297, 506
NmeAIII	GCCGAG	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	64, 368
PflMI	CCANNNNNTGG	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	332
PleI	GAGTC	2 cut(s)	86, 228
PpsI	GAGTC	2 cut(s)	86, 228
PspFI	CCCAGC	1 cut(s)	206
PspN4I	GGNNCC	4 cut(s)	85, 169, 297, 506
PspPI	GGNCC	2 cut(s)	70, 83
PsuI	RGATCY	1 cut(s)	504
SapI	GCTCTTC	1 cut(s)	49
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	3 cut(s)	199, 468, 504
Sau96I	GGNCC	2 cut(s)	70, 83
SchI	GAGTC	2 cut(s)	86, 229
ScrFI	CCNGG	1 cut(s)	172
SetI	ASST	3 cut(s)	208, 268, 292
SfaNI	GCATC	1 cut(s)	403
SinI	GGWCC	2 cut(s)	70, 83
Sse9I	AATT	2 cut(s)	340, 528
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	2 cut(s)	37, 87
TaaI	ACNGT	1 cut(s)	437
TasI	AATT	2 cut(s)	340, 528
TfiI	GAWTC	2 cut(s)	64, 368
TscAI	CASTG	1 cut(s)	442
TseI	GCWGC	1 cut(s)	330
TspDTI	ATGAA	3 cut(s)	90, 102, 303
TspGWI	ACGGA	1 cut(s)	522
TspRI	CASTG	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	70, 83
XapI	RAATTY	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.