RchiOBHm_Chr1g0368821

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011683
Physical Location & Seq
Forward (+)
58839354 .. 58841097
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59313

Sequence Viewer

Length: 441 bp
ATGGATCAGAACAAGAAGCAAGTAGGCACGACAAGCCATAGCCATGGCTCTTCTTCTTCCTCTTCATCCACGAACCTTGACCATCTCTTTGGTCCTAAGGACTCGTCGTCTTCAGCTTCTTCATCTCTATTCGGCTCTATTTTCCCACCACCACCATCCACGGGACCGGGGAGAGAAAGAAACTCTGGTAATACTACTCGAGGCAGCAGCAAGGGTTCCGTGCATCAGAATAATGAAGGTGTGGATCGTCCTTGCAACTTTAACTCATCAATCTACTACGGCGGCCAAGAAAACTATGATGCTCCTAAAAGTGGGAGTACTTATGAGTCCCAGCACCACCAGCATAACTCTAAGAAAGATGGGGGTGATGATGATTCGAATGGAAATAATTCAAACAGTACTTCAAGAGGAAACTGGTGGAAGGGGTCACTTTATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.6

Weight (kDa)

7.06

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011683)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39855 AT2G39855 AT2G39855 AT2G39855 AT2G39855 AT3G55646
fragaria_vesca FvH4_7g23590
malus_domestica MD01G1141700.v1.1 MD07G1207300.v1.1
prunus_persica Prupe.2G242500_v2.0.a1 Prupe.2G242500_v2.0.a1
pyrus_communis pycom01g16200
rosa_chinensis RchiOBHm_Chr1g0368821
rosa_laevigata RLG00000027188
rosa_roxburghii Rroxscaffold_4G00288270
rosa_rugosa Rorug01G0345000
rosa_samantha Rh1BG315700 Rh1CG330400 Rh1DG347200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 282
AclWI GGATC 2 cut(s) 12, 252
AcoI YGGCCR 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 96
AfaI GTAC 2 cut(s) 319, 400
AfiI CCNNNNNNNGG 2 cut(s) 161, 311
AgsI TTSAA 2 cut(s) 393, 405
AhdI GACNNNNNGTC 1 cut(s) 106
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
AlwI GGATC 2 cut(s) 12, 252
Ama87I CYCGRG 1 cut(s) 198
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 2 cut(s) 204, 207
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
Asp700I GAANNNNTTC 1 cut(s) 388
AspS9I GGNCC 2 cut(s) 92, 164
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 377
AsuII TTCGAA 1 cut(s) 377
AvaI CYCGRG 1 cut(s) 198
AvaII GGWCC 2 cut(s) 92, 164
AxyI CCTNAGG 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 2 cut(s) 216, 219
BccI CCATC 3 cut(s) 90, 163, 353
BceAI ACGGC 1 cut(s) 295
BcnI CCSGG 1 cut(s) 168
BisI GCNGC 3 cut(s) 205, 208, 283
BlsI GCNGC 3 cut(s) 206, 209, 284
BmcAI AGTACT 2 cut(s) 319, 400
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 2 cut(s) 92, 164
BmeRI GACNNNNNGTC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 198
BmgT120I GGNCC 2 cut(s) 92, 164
BmiI GGNNCC 2 cut(s) 165, 217
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 2 cut(s) 232, 289
BpiI GAAGAC 1 cut(s) 102
Bpu14I TTCGAA 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 43, 159, 167
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 311
Bse1I ACTGG 1 cut(s) 419
Bse21I CCTNAGG 1 cut(s) 96
BseDI CCNNGG 3 cut(s) 43, 159, 167
BseGI GGATG 2 cut(s) 65, 155
BseLI CCNNNNNNNGG 2 cut(s) 161, 311
BseNI ACTGG 1 cut(s) 419
BseXI GCAGC 2 cut(s) 216, 219
BseYI CCCAGC 1 cut(s) 330
BshFI GGCC 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 198
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 2 cut(s) 177, 313
BslI CCNNNNNNNGG 2 cut(s) 161, 311
BsmFI GGGAC 2 cut(s) 177, 313
BsnI GGCC 1 cut(s) 285
BsoBI CYCGRG 1 cut(s) 198
Bsp119I TTCGAA 1 cut(s) 377
Bsp143I GATC 2 cut(s) 4, 244
Bsp19I CCATGG 1 cut(s) 43
BspACI CCGC 1 cut(s) 282
BspANI GGCC 1 cut(s) 285
BspLI GGNNCC 2 cut(s) 165, 217
BspPI GGATC 2 cut(s) 12, 252
BspQI GCTCTTC 1 cut(s) 55
BspT104I TTCGAA 1 cut(s) 377
BsrI ACTGG 1 cut(s) 419
BssECI CCNNGG 3 cut(s) 43, 159, 167
BssMI GATC 2 cut(s) 4, 244
BssT1I CCWWGG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 2 cut(s) 55, 67
BstBI TTCGAA 1 cut(s) 377
BstDEI CTNAG 2 cut(s) 96, 351
BstDSI CCRYGG 2 cut(s) 43, 159
BstF5I GGATG 2 cut(s) 65, 155
BstKTI GATC 2 cut(s) 7, 247
BstMBI GATC 2 cut(s) 4, 244
BstMWI GCNNNNNNNGC 2 cut(s) 33, 340
BstSCI CCNGG 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 216, 219
BstV2I GAAGAC 1 cut(s) 102
BstXI CCANNNNNNTGG 2 cut(s) 44, 89
Bsu36I CCTNAGG 1 cut(s) 96
BsuRI GGCC 1 cut(s) 285
BtgI CCRYGG 2 cut(s) 43, 159
BtsCI GGATG 2 cut(s) 65, 155
Cfr13I GGNCC 2 cut(s) 92, 164
Csp6I GTAC 2 cut(s) 318, 399
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 1 cut(s) 44
CviJI RGCY 6 cut(s) 36, 42, 48, 116, 135, 285
CviKI_1 RGCY 6 cut(s) 36, 42, 48, 116, 135, 285
CviQI GTAC 2 cut(s) 318, 399
DdeI CTNAG 2 cut(s) 96, 351
DpnI GATC 2 cut(s) 6, 246
DpnII GATC 2 cut(s) 4, 244
DriI GACNNNNNGTC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 2 cut(s) 55, 67
Eam1105I GACNNNNNGTC 1 cut(s) 106
EarI CTCTTC 2 cut(s) 55, 67
Eco130I CCWWGG 1 cut(s) 43
Eco47I GGWCC 2 cut(s) 92, 164
Eco57I CTGAAG 1 cut(s) 96
Eco81I CCTNAGG 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 1 cut(s) 47
FaiI YATR 5 cut(s) 39, 45, 297, 324, 345
FaqI GGGAC 2 cut(s) 177, 313
FatI CATG 1 cut(s) 43
Fnu4HI GCNGC 3 cut(s) 205, 208, 283
FokI GGATG 2 cut(s) 52, 142
Fsp4HI GCNGC 3 cut(s) 205, 208, 283
GluI GCNGC 3 cut(s) 205, 208, 283
GsaI CCCAGC 1 cut(s) 334
HaeIII GGCC 1 cut(s) 285
HapII CCGG 1 cut(s) 167
Hin1II CATG 1 cut(s) 47
HinfI GANTC 3 cut(s) 101, 326, 374
HpaII CCGG 1 cut(s) 167
HphI GGTGA 1 cut(s) 377
Hpy188I TCNGA 2 cut(s) 9, 228
Hpy188III TCNNGA 1 cut(s) 405
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 2 cut(s) 230, 415
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4V TGCA 2 cut(s) 223, 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 340
HpyF3I CTNAG 2 cut(s) 96, 351
Hsp92II CATG 1 cut(s) 47
Kzo9I GATC 2 cut(s) 4, 244
LguI GCTCTTC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 5 cut(s) 171, 180, 344, 353, 400
Lsp1109I GCAGC 2 cut(s) 216, 219
LweI GCATC 2 cut(s) 232, 289
MaeIII GTNAC 1 cut(s) 426
MalI GATC 2 cut(s) 6, 246
MboI GATC 2 cut(s) 4, 244
MboII GAAGA 6 cut(s) 42, 45, 48, 54, 102, 111
MluCI AATT 1 cut(s) 388
MlyI GAGTC 2 cut(s) 95, 335
MnlI CCTC 3 cut(s) 70, 194, 401
MroXI GAANNNNTTC 1 cut(s) 388
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 42
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 33, 340
NciI CCSGG 1 cut(s) 168
NcoI CCATGG 1 cut(s) 43
NdeII GATC 2 cut(s) 4, 244
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 2 cut(s) 165, 217
NmuCI GTSAC 1 cut(s) 426
NspV TTCGAA 1 cut(s) 377
PaeR7I CTCGAG 1 cut(s) 198
PciSI GCTCTTC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 388
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 3 cut(s) 206, 209, 284
PleI GAGTC 2 cut(s) 95, 334
PpsI GAGTC 2 cut(s) 95, 334
PspFI CCCAGC 1 cut(s) 330
PspN4I GGNNCC 2 cut(s) 165, 217
PspPI GGNCC 2 cut(s) 92, 164
PspXI VCTCGAGB 1 cut(s) 198
RsaI GTAC 2 cut(s) 319, 400
RsaNI GTAC 2 cut(s) 318, 399
RseI CAYNNNNRTG 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 3 cut(s) 205, 208, 283
Sau3AI GATC 2 cut(s) 4, 244
Sau96I GGNCC 2 cut(s) 92, 164
ScaI AGTACT 2 cut(s) 319, 400
SchI GAGTC 2 cut(s) 95, 335
ScrFI CCNGG 1 cut(s) 168
SetI ASST 3 cut(s) 78, 118, 241
SfaNI GCATC 2 cut(s) 232, 289
Sfr274I CTCGAG 1 cut(s) 198
SfuI TTCGAA 1 cut(s) 377
SinI GGWCC 2 cut(s) 92, 164
SlaI CTCGAG 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
Sse9I AATT 1 cut(s) 388
SsiI CCGC 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 398
TaqI TCGA 2 cut(s) 199, 377
TasI AATT 1 cut(s) 388
TatI WGTACW 2 cut(s) 317, 398
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 1 cut(s) 426
TseI GCWGC 2 cut(s) 204, 207
Tsp45I GTSAC 1 cut(s) 426
TspDTI ATGAA 3 cut(s) 54, 111, 249
TspGWI ACGGA 1 cut(s) 208
VpaK11BI GGWCC 2 cut(s) 92, 164
XhoI CTCGAG 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 388
ZrmI AGTACT 2 cut(s) 319, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.