Prupe.2G242500_v2.0.a1

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011683
Physical Location & Seq
Forward (+)
26149211 .. 26150869
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G242500.1

Sequence Viewer

Length: 474 bp
ATGGAGAACAAGAACCAAGTGGGTGGTGGTGGTTCAAGCCATGCCTCTTCTTCTTCTTCCAGGACTCTGGATCATCTCTTTGGCCCTAAGGACTCTTCTTCATCTTCTTCATCCTCCTTGTTTGGCTCTATTTTCCCACCACCACCATCAGCGGGACTTGGGAGCAGTGGCAAGTACGGAAATCCAAGCGCTTTGGATAATAAGAGCCAAGGGTTTTACACCAGCAAAGGTGAAAGCACGAAAGGCGCAAGCAAAGATTCCATGATATATCAAAATGAAGCTGTGGAGCCATGCAACTTCAGCTCCTCAATCTACTATGGTGGCCAAGAAAATTATAGTCCAAGAACTGGGACGACCACTGAATCCCACCAGCACCACCTTTCTAAGAAAGATGGGGGTGATGATGATGCAAATGGGAATAATTCAAACGGTGCTTCAAGGGGAAACTGGTGGAAGGGTTCACTTTATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

16.47

Weight (kDa)

6.5

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011683)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39855 AT2G39855 AT2G39855 AT2G39855 AT2G39855 AT3G55646
fragaria_vesca FvH4_7g23590
malus_domestica MD01G1141700.v1.1 MD07G1207300.v1.1
prunus_persica Prupe.2G242500_v2.0.a1 Prupe.2G242500_v2.0.a1
pyrus_communis pycom01g16200
rosa_chinensis RchiOBHm_Chr1g0368821
rosa_laevigata RLG00000027188
rosa_roxburghii Rroxscaffold_4G00288270
rosa_rugosa Rorug01G0345000
rosa_samantha Rh1BG315700 Rh1CG330400 Rh1DG347200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 347
AciI CCGC 1 cut(s) 152
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 322
AcuI CTGAAG 1 cut(s) 283
AfaI GTAC 1 cut(s) 176
AfeI AGCGCT 1 cut(s) 190
AfiI CCNNNNNNNGG 2 cut(s) 152, 347
AgsI TTSAA 3 cut(s) 36, 426, 438
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 2 cut(s) 281, 303
AluI AGCT 2 cut(s) 281, 303
AlwI GGATC 1 cut(s) 78
Aor51HI AGCGCT 1 cut(s) 190
AoxI GGCC 2 cut(s) 82, 322
AspLEI GCGC 2 cut(s) 191, 248
AspS9I GGNCC 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 242, 410
AxyI CCTNAGG 1 cut(s) 87
BalI TGGCCA 1 cut(s) 324
BccI CCATC 2 cut(s) 154, 386
BciT130I CCWGG 1 cut(s) 61
BfoI RGCGCY 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 61
BmrI ACTGGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 397
BmuI ACTGGG 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 347
Bse1I ACTGG 2 cut(s) 352, 452
Bse21I CCTNAGG 1 cut(s) 87
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 152, 347
BseNI ACTGG 2 cut(s) 352, 452
BseRI GAGGAG 1 cut(s) 295
BshFI GGCC 2 cut(s) 84, 324
BslFI GGGAC 2 cut(s) 168, 364
BslI CCNNNNNNNGG 2 cut(s) 152, 347
BsmFI GGGAC 2 cut(s) 168, 364
BsnI GGCC 2 cut(s) 84, 324
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 1 cut(s) 152
BspANI GGCC 2 cut(s) 84, 324
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 1 cut(s) 78
BsrI ACTGG 2 cut(s) 352, 452
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 431
Bst6I CTCTTC 2 cut(s) 52, 100
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 2 cut(s) 87, 384
BstF5I GGATG 1 cut(s) 110
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 2 cut(s) 191, 248
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 243, 300
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 59
BstXI CCANNNNNNTGG 2 cut(s) 23, 67
Bsu36I CCTNAGG 1 cut(s) 87
BsuRI GGCC 2 cut(s) 84, 324
BtsCI GGATG 1 cut(s) 110
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 2 cut(s) 172, 357
Cac8I GCNNGC 1 cut(s) 250
CfoI GCGC 2 cut(s) 191, 248
Cfr13I GGNCC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 175
CviAII CATG 3 cut(s) 41, 262, 291
CviJI RGCY 8 cut(s) 39, 84, 126, 207, 281, 289, 303, 324
CviKI_1 RGCY 8 cut(s) 39, 84, 126, 207, 281, 289, 303, 324
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 2 cut(s) 87, 384
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 322
Eam1104I CTCTTC 2 cut(s) 52, 100
EarI CTCTTC 2 cut(s) 52, 100
Eco130I CCWWGG 1 cut(s) 208
Eco47III AGCGCT 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 283
Eco81I CCTNAGG 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 3 cut(s) 44, 265, 294
FaiI YATR 6 cut(s) 42, 263, 268, 292, 318, 336
FaqI GGGAC 2 cut(s) 168, 364
FatI CATG 3 cut(s) 40, 261, 290
FauI CCCGC 1 cut(s) 145
FokI GGATG 1 cut(s) 97
GlaI GCGC 2 cut(s) 190, 247
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 2 cut(s) 84, 324
HhaI GCGC 2 cut(s) 191, 248
Hin1II CATG 3 cut(s) 44, 265, 294
Hin6I GCGC 2 cut(s) 189, 246
HinP1I GCGC 2 cut(s) 189, 246
HinfI GANTC 4 cut(s) 64, 92, 257, 362
HphI GGTGA 2 cut(s) 242, 410
Hpy166II GTNNAC 1 cut(s) 461
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 1 cut(s) 461
HpyAV CCTTC 1 cut(s) 448
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4V TGCA 2 cut(s) 294, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 300
HpyF3I CTNAG 2 cut(s) 87, 384
Hsp92II CATG 3 cut(s) 44, 265, 294
HspAI GCGC 2 cut(s) 189, 246
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 3 cut(s) 162, 286, 308
LpnPI CCDG 7 cut(s) 46, 53, 73, 235, 333, 383, 433
LweI GCATC 1 cut(s) 397
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 8 cut(s) 39, 42, 45, 48, 87, 90, 96, 99
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 2 cut(s) 331, 421
MluNI TGGCCA 1 cut(s) 324
MlyI GAGTC 2 cut(s) 58, 86
MnlI CCTC 3 cut(s) 55, 124, 316
Mox20I TGGCCA 1 cut(s) 324
MscI TGGCCA 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 243, 300
NdeII GATC 1 cut(s) 70
NlaIII CATG 3 cut(s) 44, 265, 294
NlaIV GGNNCC 1 cut(s) 288
PfeI GAWTC 2 cut(s) 257, 362
PflMI CCANNNNNTGG 1 cut(s) 347
PfoI TCCNGGA 1 cut(s) 59
PleI GAGTC 2 cut(s) 58, 86
PpsI GAGTC 2 cut(s) 58, 86
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 1 cut(s) 83
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 83
SchI GAGTC 2 cut(s) 58, 86
ScrFI CCNGG 1 cut(s) 61
SetI ASST 4 cut(s) 232, 283, 305, 381
SfaNI GCATC 1 cut(s) 397
Sse9I AATT 2 cut(s) 331, 421
SsiI CCGC 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 59
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 431
TasI AATT 2 cut(s) 331, 421
TfiI GAWTC 2 cut(s) 257, 362
TscAI CASTG 2 cut(s) 172, 364
TspDTI ATGAA 3 cut(s) 90, 99, 291
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 2 cut(s) 172, 364
Van91I CCANNNNNTGG 1 cut(s) 347
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.