MD01G1141700.v1.1

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0011683
Physical Location & Seq
Forward (+)
25132567 .. 25134498
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1141700.v1.1.491

Sequence Viewer

Length: 570 bp
ATGGAGAACAAGAAGAAAGTGGGAAGTGGTGCAAGCCATGGCTCTTCTTCTTCTTCGTCATCATCAAGGAGTCTGGATCATCTCTTTGGTCCCAAGGACTCGTCGTCATCTTCTTCATCATCCCCTTCCGGATTCTTTGGCTCCATTTTCCCACCCGTCCCCTCAACGGGAGTTGGGAAGGAGAGAAGGCAGGACTTTGGAGATCAAGCTGGTAAGTACGGGAGTCCAAGTTTTTCGGATAATAAGGGTGAAAACAAAACCAGCAAAGCTTCCAATATGTATCAAAACGAAGCTGCGGATCCATGCAACCTCAGTTCATCAATCTACTATGGCGGCCAAGAAAATTATAGTCCAAGAACGAGGACCACTGAATCCCATCAGCAGCATACTTATAAGAAAGATGGCGGTGAGGACGATGCAAATGGGAATAATGCAAACAGTGCTTCGAGAGGAAACTGGTTCACTTTATTACTAACTGTTTGCTCCGGCCACCTATTAGCAGGTAAAACACTAATATCTTCTAAGAGAAAACAAATAAAGATGGTGGTGTTATATATGGTACGTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.25

Weight (kDa)

9.42

Isoelectric Point (pI)

59.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011683)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39855 AT2G39855 AT2G39855 AT2G39855 AT2G39855 AT3G55646
fragaria_vesca FvH4_7g23590
malus_domestica MD01G1141700.v1.1 MD07G1207300.v1.1
prunus_persica Prupe.2G242500_v2.0.a1 Prupe.2G242500_v2.0.a1
pyrus_communis pycom01g16200
rosa_chinensis RchiOBHm_Chr1g0368821
rosa_laevigata RLG00000027188
rosa_roxburghii Rroxscaffold_4G00288270
rosa_rugosa Rorug01G0345000
rosa_samantha Rh1BG315700 Rh1CG330400 Rh1DG347200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 393
Acc36I ACCTGC 1 cut(s) 491
AccIII TCCGGA 1 cut(s) 128
AciI CCGC 3 cut(s) 296, 333, 405
AclWI GGATC 3 cut(s) 84, 293, 306
AcoI YGGCCR 2 cut(s) 334, 487
AfaI GTAC 2 cut(s) 218, 561
AfiI CCNNNNNNNGG 2 cut(s) 166, 167
AhdI GACNNNNNGTC 1 cut(s) 103
AluBI AGCT 3 cut(s) 209, 269, 293
AluI AGCT 3 cut(s) 209, 269, 293
AlwI GGATC 3 cut(s) 84, 293, 306
Aor13HI TCCGGA 1 cut(s) 128
AoxI GGCC 2 cut(s) 334, 487
ApeKI GCWGC 2 cut(s) 293, 382
AspS9I GGNCC 2 cut(s) 89, 363
AsuHPI GGTGA 2 cut(s) 260, 419
AvaII GGWCC 2 cut(s) 89, 363
BamHI GGATCC 1 cut(s) 298
BbvI GCAGC 2 cut(s) 280, 394
BccI CCATC 3 cut(s) 384, 395, 535
BfuAI ACCTGC 1 cut(s) 491
BisI GCNGC 3 cut(s) 294, 334, 383
BlsI GCNGC 3 cut(s) 295, 335, 384
Bme18I GGWCC 2 cut(s) 89, 363
BmeRI GACNNNNNGTC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 89, 363
BmiI GGNNCC 3 cut(s) 91, 142, 300
BmsI GCATC 1 cut(s) 406
BsaAI YACGTR 1 cut(s) 563
BsaJI CCNNGG 2 cut(s) 37, 93
BsaWI WCCGGW 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 167
Bse1I ACTGG 1 cut(s) 461
BseAI TCCGGA 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 37, 93
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 166, 167
BseMII CTCAG 1 cut(s) 325
BseNI ACTGG 1 cut(s) 461
BseXI GCAGC 2 cut(s) 280, 394
BshFI GGCC 2 cut(s) 336, 489
BsiSI CCGG 2 cut(s) 129, 486
BslFI GGGAC 2 cut(s) 75, 143
BslI CCNNNNNNNGG 2 cut(s) 166, 167
BsmFI GGGAC 2 cut(s) 75, 143
BsnI GGCC 2 cut(s) 336, 489
Bsp13I TCCGGA 1 cut(s) 128
Bsp143I GATC 3 cut(s) 76, 202, 298
Bsp19I CCATGG 1 cut(s) 37
BspACI CCGC 3 cut(s) 296, 333, 405
BspANI GGCC 2 cut(s) 336, 489
BspCNI CTCAG 1 cut(s) 324
BspEI TCCGGA 1 cut(s) 128
BspLI GGNNCC 3 cut(s) 91, 142, 300
BspMI ACCTGC 1 cut(s) 491
BspPI GGATC 3 cut(s) 84, 293, 306
BspQI GCTCTTC 1 cut(s) 49
BsrI ACTGG 1 cut(s) 461
BssECI CCNNGG 2 cut(s) 37, 93
BssMI GATC 3 cut(s) 76, 202, 298
BssT1I CCWWGG 2 cut(s) 37, 93
Bst4CI ACNGT 2 cut(s) 440, 478
Bst6I CTCTTC 1 cut(s) 49
BstAPI GCANNNNNTGC 1 cut(s) 440
BstBAI YACGTR 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 2 cut(s) 311, 522
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 119
BstKTI GATC 3 cut(s) 79, 205, 301
BstMBI GATC 3 cut(s) 76, 202, 298
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstSNI TACGTA 1 cut(s) 563
BstV1I GCAGC 2 cut(s) 280, 394
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuRI GGCC 2 cut(s) 336, 489
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 1 cut(s) 119
BtsIMutI CAGTG 2 cut(s) 366, 445
BveI ACCTGC 1 cut(s) 491
Cac8I GCNNGC 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 89, 363
Csp6I GTAC 2 cut(s) 217, 560
CviAII CATG 2 cut(s) 38, 303
CviJI RGCY 8 cut(s) 36, 42, 141, 209, 269, 293, 336, 489
CviKI_1 RGCY 8 cut(s) 36, 42, 141, 209, 269, 293, 336, 489
CviQI GTAC 2 cut(s) 217, 560
DdeI CTNAG 2 cut(s) 311, 522
DpnI GATC 3 cut(s) 78, 204, 300
DpnII GATC 3 cut(s) 76, 202, 298
DriI GACNNNNNGTC 1 cut(s) 103
EaeI YGGCCR 2 cut(s) 334, 487
Eam1104I CTCTTC 1 cut(s) 49
Eam1105I GACNNNNNGTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 49
Eco105I TACGTA 1 cut(s) 563
Eco130I CCWWGG 2 cut(s) 37, 93
Eco47I GGWCC 2 cut(s) 89, 363
EcoT14I CCWWGG 2 cut(s) 37, 93
ErhI CCWWGG 2 cut(s) 37, 93
FaeI CATG 2 cut(s) 41, 306
FaqI GGGAC 2 cut(s) 75, 143
FatI CATG 2 cut(s) 37, 302
Fnu4HI GCNGC 3 cut(s) 294, 334, 383
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 3 cut(s) 294, 334, 383
GluI GCNGC 3 cut(s) 294, 334, 383
HaeIII GGCC 2 cut(s) 336, 489
HapII CCGG 2 cut(s) 129, 486
Hin1II CATG 2 cut(s) 41, 306
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 5 cut(s) 70, 98, 132, 223, 371
HpaII CCGG 2 cut(s) 129, 486
HphI GGTGA 2 cut(s) 260, 419
Hpy166II GTNNAC 1 cut(s) 462
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 3 cut(s) 74, 129, 447
Hpy8I GTNNAC 1 cut(s) 462
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 3 cut(s) 135, 172, 180
HpyCH4III ACNGT 2 cut(s) 440, 478
HpyCH4IV ACGT 1 cut(s) 562
HpyCH4V TGCA 4 cut(s) 32, 306, 419, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 2 cut(s) 311, 522
HpySE526I ACGT 1 cut(s) 562
Hsp92II CATG 2 cut(s) 41, 306
Kpn2I TCCGGA 1 cut(s) 128
Kzo9I GATC 3 cut(s) 76, 202, 298
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 2 cut(s) 146, 488
LpnPI CCDG 8 cut(s) 59, 142, 176, 195, 274, 442, 486, 499
Lsp1109I GCAGC 2 cut(s) 280, 394
LweI GCATC 1 cut(s) 406
MaeII ACGT 1 cut(s) 562
MalI GATC 3 cut(s) 78, 204, 300
MboI GATC 3 cut(s) 76, 202, 298
MboII GAAGA 8 cut(s) 25, 36, 39, 42, 45, 102, 105, 510
MflI RGATCY 1 cut(s) 298
MluCI AATT 1 cut(s) 343
MlyI GAGTC 3 cut(s) 79, 92, 232
MnlI CCTC 5 cut(s) 172, 320, 354, 403, 443
MroI TCCGGA 1 cut(s) 128
MspI CCGG 2 cut(s) 129, 486
MwoI GCNNNNNNNGC 1 cut(s) 440
NcoI CCATGG 1 cut(s) 37
NdeII GATC 3 cut(s) 76, 202, 298
NlaIII CATG 2 cut(s) 41, 306
NlaIV GGNNCC 3 cut(s) 91, 142, 300
PciSI GCTCTTC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 132, 371
PkrI GCNGC 3 cut(s) 295, 335, 384
PleI GAGTC 3 cut(s) 78, 92, 231
PpsI GAGTC 3 cut(s) 78, 92, 231
Ppu21I YACGTR 1 cut(s) 563
PsiI TTATAA 1 cut(s) 393
PspN4I GGNNCC 3 cut(s) 91, 142, 300
PspPI GGNCC 2 cut(s) 89, 363
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 2 cut(s) 218, 561
RsaNI GTAC 2 cut(s) 217, 560
SapI GCTCTTC 1 cut(s) 49
SatI GCNGC 3 cut(s) 294, 334, 383
Sau3AI GATC 3 cut(s) 76, 202, 298
Sau96I GGNCC 2 cut(s) 89, 363
SchI GAGTC 3 cut(s) 79, 92, 232
SetI ASST 7 cut(s) 211, 271, 295, 312, 495, 505, 565
SfaNI GCATC 1 cut(s) 406
SinI GGWCC 2 cut(s) 89, 363
SnaBI TACGTA 1 cut(s) 563
Sse9I AATT 1 cut(s) 343
SsiI CCGC 3 cut(s) 296, 333, 405
StyI CCWWGG 2 cut(s) 37, 93
TaaI ACNGT 2 cut(s) 440, 478
TaiI ACGT 1 cut(s) 565
TaqI TCGA 1 cut(s) 446
TasI AATT 1 cut(s) 343
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 2 cut(s) 132, 371
TscAI CASTG 2 cut(s) 373, 445
TseI GCWGC 2 cut(s) 293, 382
TspDTI ATGAA 2 cut(s) 105, 306
TspRI CASTG 2 cut(s) 373, 445
VpaK11BI GGWCC 2 cut(s) 89, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.