pycom01g16200

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0011683
Physical Location & Seq
Forward (+)
15856753 .. 15857863
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g16200.3

Sequence Viewer

Length: 483 bp
ATGGAAAACAAGAAGAAAGTGGGAAGTGGTGCAAGCCATGGCTGCTCTTCTTCTTCGTCATCATCAAGGAGTCTGGATCATCTCTTTGGTCCCAAGGACTCGTCGTCATCTTCTTCATCATCCCCTTCCGGATTCTTTGGCTCCATTTTCCCACCCGTCCCCTCAACGGGAGTTGGGAAGGAGAGAAGGCAGGACTTTGGAGATCAAGCTGGTAAGTACGGAAGTCCAAGTTTTTTGGATAATAAGGGTGAAAACAAAACCAGCAAAGCTTCCAATATGTATCAAAACGAAGCTGCGGATCCATGCAATCTCAGTTCATCAATCTACTATGGCGGCCAAGAAAATTATAGTCCAAGAACTGGGACACCTGAATCCCATCAGCAGCATACTTCTAAGAAAGATGGCGGTGAGGACGATGCAAATGGGAATAATGCAAACAGTGCTTCGAGAGGAAACTGGTGGCAGGGTTCACTTTATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

16.97

Weight (kDa)

6.9

Isoelectric Point (pI)

58.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011683)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39855 AT2G39855 AT2G39855 AT2G39855 AT2G39855 AT3G55646
fragaria_vesca FvH4_7g23590
malus_domestica MD01G1141700.v1.1 MD07G1207300.v1.1
prunus_persica Prupe.2G242500_v2.0.a1 Prupe.2G242500_v2.0.a1
pyrus_communis pycom01g16200
rosa_chinensis RchiOBHm_Chr1g0368821
rosa_laevigata RLG00000027188
rosa_roxburghii Rroxscaffold_4G00288270
rosa_rugosa Rorug01G0345000
rosa_samantha Rh1BG315700 Rh1CG330400 Rh1DG347200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 359
AccIII TCCGGA 1 cut(s) 128
AciI CCGC 3 cut(s) 296, 333, 405
AclWI GGATC 3 cut(s) 84, 293, 306
AcoI YGGCCR 1 cut(s) 334
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 3 cut(s) 166, 167, 359
AhdI GACNNNNNGTC 1 cut(s) 103
AluBI AGCT 3 cut(s) 209, 269, 293
AluI AGCT 3 cut(s) 209, 269, 293
AlwI GGATC 3 cut(s) 84, 293, 306
Aor13HI TCCGGA 1 cut(s) 128
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 3 cut(s) 42, 293, 382
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 260, 419
AvaII GGWCC 1 cut(s) 89
BamHI GGATCC 1 cut(s) 298
BbvI GCAGC 3 cut(s) 29, 280, 394
BccI CCATC 2 cut(s) 384, 395
BisI GCNGC 4 cut(s) 43, 294, 334, 383
BlsI GCNGC 4 cut(s) 44, 295, 335, 384
Bme18I GGWCC 1 cut(s) 89
BmeRI GACNNNNNGTC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 3 cut(s) 91, 142, 300
BmrI ACTGGG 1 cut(s) 369
BmsI GCATC 1 cut(s) 406
BmuI ACTGGG 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 37, 93
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 167, 359
Bse1I ACTGG 2 cut(s) 364, 461
BseAI TCCGGA 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 37, 93
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 3 cut(s) 166, 167, 359
BseMII CTCAG 1 cut(s) 325
BseNI ACTGG 2 cut(s) 364, 461
BseXI GCAGC 3 cut(s) 29, 280, 394
BshFI GGCC 1 cut(s) 336
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 3 cut(s) 75, 143, 376
BslI CCNNNNNNNGG 3 cut(s) 166, 167, 359
BsmFI GGGAC 3 cut(s) 75, 143, 376
BsnI GGCC 1 cut(s) 336
Bsp13I TCCGGA 1 cut(s) 128
Bsp143I GATC 3 cut(s) 76, 202, 298
Bsp19I CCATGG 1 cut(s) 37
BspACI CCGC 3 cut(s) 296, 333, 405
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 1 cut(s) 324
BspEI TCCGGA 1 cut(s) 128
BspLI GGNNCC 3 cut(s) 91, 142, 300
BspPI GGATC 3 cut(s) 84, 293, 306
BspQI GCTCTTC 1 cut(s) 52
BsrI ACTGG 2 cut(s) 364, 461
BssECI CCNNGG 2 cut(s) 37, 93
BssMI GATC 3 cut(s) 76, 202, 298
BssT1I CCWWGG 2 cut(s) 37, 93
Bst4CI ACNGT 1 cut(s) 440
Bst6I CTCTTC 1 cut(s) 52
BstAPI GCANNNNNTGC 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 2 cut(s) 311, 393
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 119
BstKTI GATC 3 cut(s) 79, 205, 301
BstMBI GATC 3 cut(s) 76, 202, 298
BstMWI GCNNNNNNNGC 2 cut(s) 42, 440
BstV1I GCAGC 3 cut(s) 29, 280, 394
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuRI GGCC 1 cut(s) 336
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 445
Cac8I GCNNGC 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 217
CviAII CATG 2 cut(s) 38, 303
CviJI RGCY 7 cut(s) 36, 42, 141, 209, 269, 293, 336
CviKI_1 RGCY 7 cut(s) 36, 42, 141, 209, 269, 293, 336
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 311, 393
DpnI GATC 3 cut(s) 78, 204, 300
DpnII GATC 3 cut(s) 76, 202, 298
DriI GACNNNNNGTC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 52
Eam1105I GACNNNNNGTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 52
Eco130I CCWWGG 2 cut(s) 37, 93
Eco47I GGWCC 1 cut(s) 89
EcoT14I CCWWGG 2 cut(s) 37, 93
ErhI CCWWGG 2 cut(s) 37, 93
FaeI CATG 2 cut(s) 41, 306
FaiI YATR 6 cut(s) 39, 278, 304, 330, 348, 387
FaqI GGGAC 3 cut(s) 75, 143, 376
FatI CATG 2 cut(s) 37, 302
Fnu4HI GCNGC 4 cut(s) 43, 294, 334, 383
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 4 cut(s) 43, 294, 334, 383
GluI GCNGC 4 cut(s) 43, 294, 334, 383
HaeIII GGCC 1 cut(s) 336
HapII CCGG 1 cut(s) 129
Hin1II CATG 2 cut(s) 41, 306
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 4 cut(s) 70, 98, 132, 371
HpaII CCGG 1 cut(s) 129
HphI GGTGA 2 cut(s) 260, 419
Hpy166II GTNNAC 1 cut(s) 470
Hpy188III TCNNGA 3 cut(s) 74, 129, 447
Hpy8I GTNNAC 1 cut(s) 470
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 3 cut(s) 135, 172, 180
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4V TGCA 4 cut(s) 32, 306, 419, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 440
HpyF3I CTNAG 2 cut(s) 311, 393
Hsp92II CATG 2 cut(s) 41, 306
Kpn2I TCCGGA 1 cut(s) 128
Kzo9I GATC 3 cut(s) 76, 202, 298
LguI GCTCTTC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 9 cut(s) 59, 142, 176, 195, 274, 345, 381, 442, 449
Lsp1109I GCAGC 3 cut(s) 29, 280, 394
LweI GCATC 1 cut(s) 406
MalI GATC 3 cut(s) 78, 204, 300
MboI GATC 3 cut(s) 76, 202, 298
MboII GAAGA 6 cut(s) 25, 39, 42, 45, 102, 105
MflI RGATCY 1 cut(s) 298
MluCI AATT 1 cut(s) 343
MlyI GAGTC 2 cut(s) 79, 92
MnlI CCTC 3 cut(s) 172, 403, 443
MroI TCCGGA 1 cut(s) 128
MspI CCGG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 42, 440
NcoI CCATGG 1 cut(s) 37
NdeII GATC 3 cut(s) 76, 202, 298
NlaIII CATG 2 cut(s) 41, 306
NlaIV GGNNCC 3 cut(s) 91, 142, 300
PciSI GCTCTTC 1 cut(s) 52
PfeI GAWTC 2 cut(s) 132, 371
PflMI CCANNNNNTGG 1 cut(s) 359
PkrI GCNGC 4 cut(s) 44, 295, 335, 384
PleI GAGTC 2 cut(s) 78, 92
PpsI GAGTC 2 cut(s) 78, 92
PspN4I GGNNCC 3 cut(s) 91, 142, 300
PspPI GGNCC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SapI GCTCTTC 1 cut(s) 52
SatI GCNGC 4 cut(s) 43, 294, 334, 383
Sau3AI GATC 3 cut(s) 76, 202, 298
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 2 cut(s) 79, 92
SetI ASST 4 cut(s) 211, 271, 295, 370
SfaNI GCATC 1 cut(s) 406
SinI GGWCC 1 cut(s) 89
Sse9I AATT 1 cut(s) 343
SsiI CCGC 3 cut(s) 296, 333, 405
StyI CCWWGG 2 cut(s) 37, 93
TaaI ACNGT 1 cut(s) 440
TaqI TCGA 1 cut(s) 446
TasI AATT 1 cut(s) 343
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 2 cut(s) 132, 371
TscAI CASTG 1 cut(s) 445
TseI GCWGC 3 cut(s) 42, 293, 382
TspDTI ATGAA 2 cut(s) 105, 306
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 1 cut(s) 445
Van91I CCANNNNNTGG 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.