Rroxscaffold_4G00288270

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0011683
Physical Location & Seq
Reverse (-)
9127549 .. 9129106
1558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00288270.1

Sequence Viewer

Length: 465 bp
ATGGATCAGAACAAGAAGCAAGTCGGCACGACAAGCCATAGCCATGGCTCTTCTTCTTCCTCTTCATCCACGAACCTTGACCATCTCTTTGGTCCTAAGGACTCGTCGTCTTCAGCTTCTTCATCTCTATTCGGCTCTATTTTCCCACCACCACCATCCACGGGACCGGGGAGAGAAAGAAACTCTGGTAATACTACTCGAGGCAGCAGCAAGGGTTCAGTGCATCAGAATAATGAAGGTGTGGATCGTCCTTGCAACTTTAACTCATCAATCTACTACGGCGGCCAAGAAAACTATAATGTTCCTAAAAGTGGGAGTACTTATGAGTCCCAGCACCACCAGCATAACGGTCACTTTATTACTAAATCAGTAAATCTTGCTGCACGTACTATGCGATTTCACCACCCGAAAGAGGTGTGTGTCACTCTCTATGAGTCTGCTGTGAGACTATGCAATCTACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.65

Weight (kDa)

9.1

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011683)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39855 AT2G39855 AT2G39855 AT2G39855 AT2G39855 AT3G55646
fragaria_vesca FvH4_7g23590
malus_domestica MD01G1141700.v1.1 MD07G1207300.v1.1
prunus_persica Prupe.2G242500_v2.0.a1 Prupe.2G242500_v2.0.a1
pyrus_communis pycom01g16200
rosa_chinensis RchiOBHm_Chr1g0368821
rosa_laevigata RLG00000027188
rosa_roxburghii Rroxscaffold_4G00288270
rosa_rugosa Rorug01G0345000
rosa_samantha Rh1BG315700 Rh1CG330400 Rh1DG347200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 282
AclWI GGATC 2 cut(s) 12, 252
AcoI YGGCCR 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 96
AfaI GTAC 2 cut(s) 319, 388
AfiI CCNNNNNNNGG 3 cut(s) 161, 311, 412
AhdI GACNNNNNGTC 1 cut(s) 106
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 439
AlwI GGATC 2 cut(s) 12, 252
Ama87I CYCGRG 1 cut(s) 198
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 3 cut(s) 204, 207, 380
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
AspS9I GGNCC 2 cut(s) 92, 164
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 392
AvaI CYCGRG 1 cut(s) 198
AvaII GGWCC 2 cut(s) 92, 164
AxyI CCTNAGG 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 216, 219, 367
BccI CCATC 2 cut(s) 90, 163
BceAI ACGGC 1 cut(s) 295
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 439
BisI GCNGC 4 cut(s) 205, 208, 283, 381
BlsI GCNGC 4 cut(s) 206, 209, 284, 382
BmcAI AGTACT 1 cut(s) 319
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 2 cut(s) 92, 164
BmeRI GACNNNNNGTC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 198
BmgT120I GGNCC 2 cut(s) 92, 164
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 386
BsaJI CCNNGG 3 cut(s) 43, 159, 167
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 311, 412
Bse21I CCTNAGG 1 cut(s) 96
BseDI CCNNGG 3 cut(s) 43, 159, 167
BseGI GGATG 2 cut(s) 65, 155
BseLI CCNNNNNNNGG 3 cut(s) 161, 311, 412
BseXI GCAGC 3 cut(s) 216, 219, 367
BseYI CCCAGC 1 cut(s) 330
BsgI GTGCAG 1 cut(s) 366
BshFI GGCC 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 198
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 2 cut(s) 177, 313
BslI CCNNNNNNNGG 3 cut(s) 161, 311, 412
BsmAI GTCTC 1 cut(s) 439
BsmFI GGGAC 2 cut(s) 177, 313
BsnI GGCC 1 cut(s) 285
BsoBI CYCGRG 1 cut(s) 198
Bsp143I GATC 2 cut(s) 4, 244
Bsp19I CCATGG 1 cut(s) 43
BspACI CCGC 1 cut(s) 282
BspANI GGCC 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 2 cut(s) 12, 252
BspQI GCTCTTC 1 cut(s) 55
BssECI CCNNGG 3 cut(s) 43, 159, 167
BssMI GATC 2 cut(s) 4, 244
BssT1I CCWWGG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 2 cut(s) 55, 67
BstBAI YACGTR 1 cut(s) 386
BstDEI CTNAG 1 cut(s) 96
BstDSI CCRYGG 2 cut(s) 43, 159
BstF5I GGATG 2 cut(s) 65, 155
BstKTI GATC 2 cut(s) 7, 247
BstMAI GTCTC 1 cut(s) 439
BstMBI GATC 2 cut(s) 4, 244
BstMWI GCNNNNNNNGC 2 cut(s) 33, 340
BstSCI CCNGG 1 cut(s) 166
BstV1I GCAGC 3 cut(s) 216, 219, 367
BstV2I GAAGAC 1 cut(s) 102
BstXI CCANNNNNNTGG 2 cut(s) 44, 89
Bsu36I CCTNAGG 1 cut(s) 96
BsuRI GGCC 1 cut(s) 285
BtgI CCRYGG 2 cut(s) 43, 159
BtsCI GGATG 2 cut(s) 65, 155
BtsIMutI CAGTG 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 92, 164
Csp6I GTAC 2 cut(s) 318, 387
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 1 cut(s) 44
CviJI RGCY 6 cut(s) 36, 42, 48, 116, 135, 285
CviKI_1 RGCY 6 cut(s) 36, 42, 48, 116, 135, 285
CviQI GTAC 2 cut(s) 318, 387
DdeI CTNAG 1 cut(s) 96
DpnI GATC 2 cut(s) 6, 246
DpnII GATC 2 cut(s) 4, 244
DriI GACNNNNNGTC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 2 cut(s) 55, 67
Eam1105I GACNNNNNGTC 1 cut(s) 106
EarI CTCTTC 2 cut(s) 55, 67
Eco130I CCWWGG 1 cut(s) 43
Eco47I GGWCC 2 cut(s) 92, 164
Eco57I CTGAAG 1 cut(s) 96
Eco81I CCTNAGG 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 1 cut(s) 47
FaiI YATR 8 cut(s) 39, 45, 297, 324, 345, 392, 432, 451
FaqI GGGAC 2 cut(s) 177, 313
FatI CATG 1 cut(s) 43
Fnu4HI GCNGC 4 cut(s) 205, 208, 283, 381
FokI GGATG 2 cut(s) 52, 142
Fsp4HI GCNGC 4 cut(s) 205, 208, 283, 381
GluI GCNGC 4 cut(s) 205, 208, 283, 381
GsaI CCCAGC 1 cut(s) 334
HaeIII GGCC 1 cut(s) 285
HapII CCGG 1 cut(s) 167
Hin1II CATG 1 cut(s) 47
HinfI GANTC 3 cut(s) 101, 326, 434
HpaII CCGG 1 cut(s) 167
HphI GGTGA 1 cut(s) 392
Hpy188I TCNGA 2 cut(s) 9, 228
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 4 cut(s) 223, 255, 383, 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 340
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 1 cut(s) 47
Kzo9I GATC 2 cut(s) 4, 244
LguI GCTCTTC 1 cut(s) 55
LpnPI CCDG 4 cut(s) 171, 180, 344, 353
Lsp1109I GCAGC 3 cut(s) 216, 219, 367
LweI GCATC 1 cut(s) 232
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 2 cut(s) 350, 421
MalI GATC 2 cut(s) 6, 246
MboI GATC 2 cut(s) 4, 244
MboII GAAGA 6 cut(s) 42, 45, 48, 54, 102, 111
MlyI GAGTC 3 cut(s) 95, 335, 443
MnlI CCTC 3 cut(s) 70, 194, 406
MseI TTAA 2 cut(s) 261, 463
MslI CAYNNNNRTG 1 cut(s) 42
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 33, 340
NciI CCSGG 1 cut(s) 168
NcoI CCATGG 1 cut(s) 43
NdeII GATC 2 cut(s) 4, 244
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 2 cut(s) 350, 421
PaeR7I CTCGAG 1 cut(s) 198
PciSI GCTCTTC 1 cut(s) 55
PcsI WCGNNNNNNNCGW 1 cut(s) 391
PkrI GCNGC 4 cut(s) 206, 209, 284, 382
PleI GAGTC 3 cut(s) 95, 334, 442
PpsI GAGTC 3 cut(s) 95, 334, 442
Ppu21I YACGTR 1 cut(s) 386
PspFI CCCAGC 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 2 cut(s) 92, 164
PspXI VCTCGAGB 1 cut(s) 198
RsaI GTAC 2 cut(s) 319, 388
RsaNI GTAC 2 cut(s) 318, 387
RseI CAYNNNNRTG 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 55
SaqAI TTAA 2 cut(s) 261, 463
SatI GCNGC 4 cut(s) 205, 208, 283, 381
Sau3AI GATC 2 cut(s) 4, 244
Sau96I GGNCC 2 cut(s) 92, 164
ScaI AGTACT 1 cut(s) 319
SchI GAGTC 3 cut(s) 95, 335, 443
ScrFI CCNGG 1 cut(s) 168
SetI ASST 6 cut(s) 78, 118, 241, 388, 417, 463
SfaNI GCATC 1 cut(s) 232
Sfr274I CTCGAG 1 cut(s) 198
SinI GGWCC 2 cut(s) 92, 164
SlaI CTCGAG 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
SsiI CCGC 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 350
TaiI ACGT 1 cut(s) 388
TaqI TCGA 1 cut(s) 199
TatI WGTACW 1 cut(s) 317
TauI GCSGC 1 cut(s) 285
Tru1I TTAA 2 cut(s) 261, 463
Tru9I TTAA 2 cut(s) 261, 463
TscAI CASTG 1 cut(s) 225
TseFI GTSAC 2 cut(s) 350, 421
TseI GCWGC 3 cut(s) 204, 207, 380
Tsp45I GTSAC 2 cut(s) 350, 421
TspDTI ATGAA 3 cut(s) 54, 111, 249
TspRI CASTG 1 cut(s) 225
VpaK11BI GGWCC 2 cut(s) 92, 164
XhoI CTCGAG 1 cut(s) 198
ZrmI AGTACT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.