Rorug01G0345000

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011683
Physical Location & Seq
Reverse (-)
46280405 .. 46281414
1010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0345000.1

Sequence Viewer

Length: 675 bp
ATGGCCGACTCCAACAACAAAGACCTCTACGACGCCGATGACACCCTCTCCTTCTGTGACTTCTCCATCTACAACGACGACTACGACAACAACTACTCCACTCCTCGGAAATATCCAGAGTCTCCAGACCAGGACATGTTCGAGTTCCTCATCGACCCGGACTTCGAGCTCGACTCAACAACAATGGACACCATCGTCTTCTGCGGTAAAACCATGAACAACACCACAACAAAGCAACCTAAACTGTTCACAAGAGACCCGCATAACGGCCTCTTCTTGGTCAAAACTAACTCCTTCAAGCGATCCCAGAGTCTCCGGTCGACCGATCTCGCCACCAAACCCTCGTTCAAGTCTTCACCGGCGACCGCGAGCTGCCGTTACCAGAGCGTCAAGTCTAGGAAGCACAAGATGGTGCTGATCGGATCTTTGTCCAAGCCTCAGCCTAAGATGGTGCTCAGCGATATAAAGAAGAGACAAGGAAGGTTGGCTCCGGCGCCGCTGTTTCCTGTCAGCGAAGGCGGAGAACAGGCTGTGGACGGTGGGAGTAAGGCCCACAAGTTGAGCTTGCTTCGGCCACTCAGGTGTAGGGCCCATTTCGTGAGCGCGTTGGTGAAGGCCTCCTTTGGTTGCATTCCGTCGCCACGACCCGTCAACGGCCACGCTGCATTGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

24.92

Weight (kDa)

9.15

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011683)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39855 AT2G39855 AT2G39855 AT2G39855 AT2G39855 AT3G55646
fragaria_vesca FvH4_7g23590
malus_domestica MD01G1141700.v1.1 MD07G1207300.v1.1
prunus_persica Prupe.2G242500_v2.0.a1 Prupe.2G242500_v2.0.a1
pyrus_communis pycom01g16200
rosa_chinensis RchiOBHm_Chr1g0368821
rosa_laevigata RLG00000027188
rosa_roxburghii Rroxscaffold_4G00288270
rosa_rugosa Rorug01G0345000
rosa_samantha Rh1BG315700 Rh1CG330400 Rh1DG347200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 493
AccI GTMKAC 1 cut(s) 320
AccII CGCG 2 cut(s) 368, 605
AciI CCGC 5 cut(s) 204, 260, 366, 497, 519
AclWI GGATC 2 cut(s) 297, 430
AcoI YGGCCR 3 cut(s) 3, 572, 655
AcyI GRCGYC 2 cut(s) 33, 494
AfiI CCNNNNNNNGG 4 cut(s) 105, 266, 277, 653
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 2 cut(s) 298, 349
AjnI CCWGG 1 cut(s) 129
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AleI CACNNNNGTG 1 cut(s) 580
AluBI AGCT 3 cut(s) 169, 372, 564
AluI AGCT 3 cut(s) 169, 372, 564
Alw21I GWGCWC 2 cut(s) 171, 456
Alw26I GTCTC 4 cut(s) 126, 249, 317, 466
AlwI GGATC 2 cut(s) 297, 430
AoxI GGCC 7 cut(s) 3, 268, 549, 572, 588, 615, 655
ApaI GGGCCC 1 cut(s) 592
ApeKI GCWGC 2 cut(s) 372, 662
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspLEI GCGC 2 cut(s) 496, 605
AspS9I GGNCC 3 cut(s) 550, 588, 589
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 348, 622
BaeGI GKGCMC 1 cut(s) 592
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 2 cut(s) 171, 592
BbsI GAAGAC 2 cut(s) 190, 345
Bbv12I GWGCWC 2 cut(s) 171, 456
BbvCI CCTCAGC 1 cut(s) 438
BbvI GCAGC 2 cut(s) 359, 649
BccI CCATC 4 cut(s) 74, 200, 403, 442
BceAI ACGGC 3 cut(s) 283, 360, 670
BciT130I CCWGG 1 cut(s) 131
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 4 cut(s) 126, 249, 317, 466
BfaI CTAG 1 cut(s) 396
BfoI RGCGCY 1 cut(s) 497
BisI GCNGC 3 cut(s) 373, 497, 663
BlpI GCTNAGC 1 cut(s) 455
BlsI GCNGC 3 cut(s) 374, 498, 664
Bme1390I CCNGG 2 cut(s) 131, 158
BmgT120I GGNCC 3 cut(s) 550, 588, 589
BmiI GGNNCC 3 cut(s) 489, 495, 590
BmrFI CCNGG 2 cut(s) 131, 158
BpiI GAAGAC 2 cut(s) 190, 345
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpmI CTGGAG 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 438
Bpu1102I GCTNAGC 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 158
BsaHI GRCGYC 2 cut(s) 33, 494
BsaI GGTCTC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 104
BsaWI WCCGGW 1 cut(s) 315
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 80, 110
Bsc4I CCNNNNNNNGG 4 cut(s) 105, 266, 277, 653
Bse118I RCCGGY 1 cut(s) 358
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 104
BseLI CCNNNNNNNGG 4 cut(s) 105, 266, 277, 653
BseMII CTCAG 3 cut(s) 452, 469, 592
BseRI GAGGAG 1 cut(s) 93
BseSI GKGCMC 1 cut(s) 592
BseXI GCAGC 2 cut(s) 359, 649
Bsh1236I CGCG 2 cut(s) 368, 605
Bsh1285I CGRYCG 3 cut(s) 320, 324, 366
BshFI GGCC 7 cut(s) 5, 270, 551, 574, 590, 617, 657
BshNI GGYRCC 1 cut(s) 493
BsiEI CGRYCG 3 cut(s) 320, 324, 366
BsiHKAI GWGCWC 2 cut(s) 171, 456
BsiSI CCGG 4 cut(s) 158, 316, 359, 491
BslI CCNNNNNNNGG 4 cut(s) 105, 266, 277, 653
BsmAI GTCTC 4 cut(s) 126, 249, 317, 466
BsmI GAATGC 1 cut(s) 630
BsnI GGCC 7 cut(s) 5, 270, 551, 574, 590, 617, 657
Bso31I GGTCTC 1 cut(s) 249
Bsp120I GGGCCC 1 cut(s) 588
Bsp1286I GDGCHC 3 cut(s) 171, 456, 592
Bsp143I GATC 4 cut(s) 302, 325, 417, 422
Bsp1720I GCTNAGC 1 cut(s) 455
BspACI CCGC 5 cut(s) 204, 260, 366, 497, 519
BspANI GGCC 7 cut(s) 5, 270, 551, 574, 590, 617, 657
BspCNI CTCAG 3 cut(s) 451, 468, 591
BspFNI CGCG 2 cut(s) 368, 605
BspLI GGNNCC 3 cut(s) 489, 495, 590
BspPI GGATC 2 cut(s) 297, 430
BspT107I GGYRCC 1 cut(s) 493
BspTNI GGTCTC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 358
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 4 cut(s) 302, 325, 417, 422
BssNI GRCGYC 2 cut(s) 33, 494
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 2 cut(s) 246, 539
Bst6I CTCTTC 2 cut(s) 278, 464
BstACI GRCGYC 2 cut(s) 33, 494
BstC8I GCNNGC 2 cut(s) 370, 566
BstDEI CTNAG 5 cut(s) 438, 444, 455, 578, 672
BstFNI CGCG 2 cut(s) 368, 605
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 2 cut(s) 496, 605
BstKTI GATC 4 cut(s) 305, 328, 420, 425
BstMAI GTCTC 4 cut(s) 126, 249, 317, 466
BstMBI GATC 4 cut(s) 302, 325, 417, 422
BstMCI CGRYCG 3 cut(s) 320, 324, 366
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 2 cut(s) 129, 156
BstSLI GKGCMC 1 cut(s) 592
BstUI CGCG 2 cut(s) 368, 605
BstV1I GCAGC 2 cut(s) 359, 649
BstV2I GAAGAC 2 cut(s) 190, 345
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
BsuRI GGCC 7 cut(s) 5, 270, 551, 574, 590, 617, 657
Cac8I GCNNGC 2 cut(s) 370, 566
CfoI GCGC 2 cut(s) 496, 605
Cfr10I RCCGGY 1 cut(s) 358
Cfr13I GGNCC 3 cut(s) 550, 588, 589
CseI GACGC 2 cut(s) 41, 376
CviAII CATG 2 cut(s) 136, 214
DdeI CTNAG 5 cut(s) 438, 444, 455, 578, 672
DinI GGCGCC 1 cut(s) 495
DpnI GATC 4 cut(s) 304, 327, 419, 424
DpnII GATC 4 cut(s) 302, 325, 417, 422
DrdI GACNNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 194
EaeI YGGCCR 3 cut(s) 3, 572, 655
Eam1104I CTCTTC 2 cut(s) 278, 464
EarI CTCTTC 2 cut(s) 278, 464
EciI GGCGGA 1 cut(s) 534
Ecl136II GAGCTC 1 cut(s) 169
Eco147I AGGCCT 1 cut(s) 617
Eco24I GRGCYC 2 cut(s) 171, 592
Eco31I GGTCTC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 129
EcoT38I GRGCYC 2 cut(s) 171, 592
EgeI GGCGCC 1 cut(s) 495
EheI GGCGCC 1 cut(s) 495
FaeI CATG 2 cut(s) 139, 217
FaiI YATR 4 cut(s) 137, 215, 264, 464
FalI AAGNNNNNCTT 4 cut(s) 548, 580, 605, 637
FatI CATG 2 cut(s) 135, 213
FauI CCCGC 1 cut(s) 267
FblI GTMKAC 1 cut(s) 320
Fnu4HI GCNGC 3 cut(s) 373, 497, 663
FriOI GRGCYC 2 cut(s) 171, 592
Fsp4HI GCNGC 3 cut(s) 373, 497, 663
FspBI CTAG 1 cut(s) 396
GlaI GCGC 2 cut(s) 495, 604
GluI GCNGC 3 cut(s) 373, 497, 663
GsuI CTGGAG 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 497
HaeIII GGCC 7 cut(s) 5, 270, 551, 574, 590, 617, 657
HapII CCGG 4 cut(s) 158, 316, 359, 491
HgaI GACGC 2 cut(s) 41, 376
HhaI GCGC 2 cut(s) 496, 605
Hin1I GRCGYC 2 cut(s) 33, 494
Hin1II CATG 2 cut(s) 139, 217
Hin6I GCGC 2 cut(s) 494, 603
HinP1I GCGC 2 cut(s) 494, 603
HincII GTYRAC 2 cut(s) 321, 652
HindII GTYRAC 2 cut(s) 321, 652
HinfI GANTC 4 cut(s) 8, 119, 173, 310
HpaII CCGG 4 cut(s) 158, 316, 359, 491
HphI GGTGA 2 cut(s) 348, 622
Hpy166II GTNNAC 4 cut(s) 249, 321, 535, 652
Hpy188I TCNGA 2 cut(s) 108, 422
Hpy188III TCNNGA 3 cut(s) 116, 125, 598
Hpy8I GTNNAC 4 cut(s) 249, 321, 535, 652
Hpy99I CGWCG 3 cut(s) 35, 80, 640
HpyAV CCTTC 5 cut(s) 61, 304, 474, 509, 607
HpyCH4III ACNGT 2 cut(s) 246, 539
HpyCH4V TGCA 2 cut(s) 630, 665
HpyF3I CTNAG 5 cut(s) 438, 444, 455, 578, 672
Hsp92I GRCGYC 2 cut(s) 33, 494
Hsp92II CATG 2 cut(s) 139, 217
HspAI GCGC 2 cut(s) 494, 603
KasI GGCGCC 1 cut(s) 493
Kzo9I GATC 4 cut(s) 302, 325, 417, 422
LmnI GCTCC 1 cut(s) 493
Lsp1109I GCAGC 2 cut(s) 359, 649
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 2 cut(s) 56, 377
MalI GATC 4 cut(s) 304, 327, 419, 424
MboI GATC 4 cut(s) 302, 325, 417, 422
MboII GAAGA 4 cut(s) 190, 265, 345, 481
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 3 cut(s) 171, 456, 592
Mly113I GGCGCC 1 cut(s) 494
MlyI GAGTC 4 cut(s) 2, 128, 167, 319
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 8 cut(s) 35, 56, 114, 158, 281, 352, 447, 628
MslI CAYNNNNRTG 1 cut(s) 580
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 4 cut(s) 158, 316, 359, 491
MspR9I CCNGG 2 cut(s) 131, 158
Mva1269I GAATGC 1 cut(s) 630
MvaI CCWGG 1 cut(s) 131
MvnI CGCG 2 cut(s) 368, 605
NarI GGCGCC 1 cut(s) 494
NciI CCSGG 1 cut(s) 158
NdeII GATC 4 cut(s) 302, 325, 417, 422
NlaIII CATG 2 cut(s) 139, 217
NlaIV GGNNCC 3 cut(s) 489, 495, 590
NmuCI GTSAC 1 cut(s) 56
NspI RCATGY 1 cut(s) 139
OliI CACNNNNGTG 1 cut(s) 580
PceI AGGCCT 1 cut(s) 617
PciI ACATGT 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 1 cut(s) 630
PkrI GCNGC 3 cut(s) 374, 498, 664
PleI GAGTC 4 cut(s) 2, 127, 167, 318
PluTI GGCGCC 1 cut(s) 497
PpsI GAGTC 4 cut(s) 2, 127, 167, 318
PscI ACATGT 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 3 cut(s) 489, 495, 590
PspOMI GGGCCC 1 cut(s) 588
PspPI GGNCC 3 cut(s) 550, 588, 589
PsuI RGATCY 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 580
SacI GAGCTC 1 cut(s) 171
SalI GTCGAC 1 cut(s) 319
SatI GCNGC 3 cut(s) 373, 497, 663
Sau3AI GATC 4 cut(s) 302, 325, 417, 422
Sau96I GGNCC 3 cut(s) 550, 588, 589
SchI GAGTC 4 cut(s) 2, 128, 167, 319
ScrFI CCNGG 2 cut(s) 131, 158
SduI GDGCHC 3 cut(s) 171, 456, 592
SetI ASST 7 cut(s) 27, 171, 241, 374, 485, 566, 584
SfoI GGCGCC 1 cut(s) 495
SgrAI CRCCGGYG 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 580
SseBI AGGCCT 1 cut(s) 617
SsiI CCGC 5 cut(s) 204, 260, 366, 497, 519
SspDI GGCGCC 1 cut(s) 493
SspMI CTAG 1 cut(s) 396
SstI GAGCTC 1 cut(s) 171
StuI AGGCCT 1 cut(s) 617
StyD4I CCNGG 2 cut(s) 129, 156
TaaI ACNGT 2 cut(s) 246, 539
TaqI TCGA 5 cut(s) 141, 153, 165, 171, 320
TaqII GACCGA 1 cut(s) 338
TauI GCSGC 1 cut(s) 499
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 2 cut(s) 372, 662
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 624
XceI RCATGY 1 cut(s) 139
XmiI GTMKAC 1 cut(s) 320
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.