FvH4_7g23610

Rop guanine nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
18372434 .. 18375643
3210 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23610.t2

Sequence Viewer

Length: 1785 bp
ATGGAAGCTTTATCAAAGAAAAGGGAGAGTTGTGAGAAGAACAGAGCTGGGTTCAAGTCTTCAGCTGGGACTGAGTCAATGACCGATTCCAGTGCCGAGTCGAGGGAGAGCAGCTCGAGTAGATCGAGCTATGAGACTTCAAGTGAGGAAGTGAAGAGAAAAGGACCCAACTTGTTGGGCTGGCCTATAAGGAAAGCTGAATTGTGCAAAACCTCAGCTGATTTGGGTGCAGCTGAAGAGAAAGAAAATGTTGATGATTTGAAGTATAAGGATTTGGCTGCCAAAATTGCAGAGATGGATATGATGAAAGAGAGATTTTCAAAATTGTTGCTTGGTGAAGACATGTCAGGGTCTGGTAAAGGGGTCTGCACAGCCATGGCTATTTCAAATGCCATCACCAATCTTTGTGCTACAATTTTTGGGCAACTGTGGAGGTTGGAACCCTTGCCTTCTGAAAAGAAATCGATGTGGAAAAGAGAGATGGAATGGCTAATTTGCGTTAGTGATCATATTGTGGAATTGATACCCTCTTGGCAAACATTTCCTGATGGAAAAAAGCTAGAGGTCATGACTTGCAGGCCCAGATCAGATATCTTCATGAATCTGCCAGCACTACGCAAGCTTGACAATATGCTTCTTGATATACTAGAGAGTTTTGCCAATACAGAGTTCTGGTATGTTGATCAAGGAGTTATAGCCCCAGAAGGAGATGGCTCAGCCTCTTTTCGCAAAACAGTCCAGCGGCAAGAGGAGAAGTGGTGGCTACCTGTACCACGTGTAGCATCTGATGGTCTCAGTGAAAGTACAAGAAAGCAGTTGCATCACACAAGGGAATGCACAAATCAGATACTTAAAGCTGCAATGGCTATCAATAACCTTGCTTTAGCAGATATGGAAGTTCCAGAATCATACTTGGAAACTCTTCCTAAGAATGGGAGGGCCTGCCTTGGGGACATAATCTACCGATATATTACCTCAGATAAGTTCTCACCAGAGTTTCTGCTTGATTGCCTTGATCTGTCCAGTGAACATGTTGCTCTTGAGATTGCAAACCGTGTTGAAGCCTCAATATTTGTTTGGCGTCGAAGAGGTCACGGTCACTCAAAACCACAAACTGTTCCAAACCGCTCCACTACAAAGTCATCATGGGAAATGGTCAAGGACTTAGTGATCGATGTGGATAAGAGAGCATTGCTGGCAGAAAGAGCTGAAAGCCTCCTGCTTTCTTTAAAGCAGCGTTTTCCTTGTCTTACACAAACTATCTTGGACACCAGCAAAATTCAGTACAACAAGGATGTTGGAAAATCCATTCTTGAAAGCTATTCAAGAGTTCTGGAGAGCCTTGCATTCAACATTGTGGCTCGCATTGATGACTTGCTGTATGTGGACGACTTGGCTAAACAGACTGATAGAATATCATCAGTTACAGCAGTCAGTGTGATTTCTCGAAAGAAGGTTCCAGTCACATATTCAGTGCCTCACTCGAGCACTCCTTTCAAAAGATCTTCTGCCAATCCTAACTTATCCCCTGCACCCTTAATCAGCCCTGCAAGGGGAGAGAGAACTCCTTTTCTCCGCAGCAACAACACCAACAATGTTGACAAGCCTCCTCGTCGCGGCTTTGGAGTGAGAAGAGTCTTGACAAATTATCTTGGTGTCGAGACAAAGCCAAGGATATGTAGCAACACCGTTGAAGGGTCTGTTTCCATACCAAACATACATGGCACAGAAACTTTGGATCGTCAGAAGGACTCTTCCCACCAAAATGGGATCAAATCACGTTGA

Protein Analysis

595

Amino Acids

66.65

Weight (kDa)

8.68

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 1 - 312 3.3e-145 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1128
AccII CGCG 1 cut(s) 1617
AciI CCGC 4 cut(s) 742, 1126, 1576, 1617
AclWI GGATC 2 cut(s) 1746, 1778
AcsI RAATTY 1 cut(s) 1278
AcuI CTGAAG 2 cut(s) 45, 255
AcvI CACGTG 1 cut(s) 776
AcyI GRCGYC 1 cut(s) 1081
AfaI GTAC 3 cut(s) 771, 805, 1286
AfiI CCNNNNNNNGG 7 cut(s) 102, 932, 948, 1552, 1553, 1616, 1695
AflIII ACRYGT 3 cut(s) 342, 775, 1030
AjuI GAANNNNNNNTTGG 2 cut(s) 653, 685
Alw21I GWGCWC 1 cut(s) 1490
Alw26I GTCTC 3 cut(s) 128, 797, 1655
AlwI GGATC 2 cut(s) 1746, 1778
AlwNI CAGNNNCTG 1 cut(s) 353
Ama87I CYCGRG 2 cut(s) 115, 1483
AoxI GGCC 3 cut(s) 182, 578, 939
ApeKI GCWGC 6 cut(s) 111, 230, 278, 857, 1234, 1578
ApoI RAATTY 1 cut(s) 1278
Asp700I GAANNNNTTC 1 cut(s) 921
AspS9I GGNCC 3 cut(s) 164, 579, 939
AsuHPI GGTGA 3 cut(s) 347, 388, 981
AvaI CYCGRG 2 cut(s) 115, 1483
AvaII GGWCC 1 cut(s) 164
BbrPI CACGTG 1 cut(s) 776
BbsI GAAGAC 2 cut(s) 51, 345
Bbv12I GWGCWC 1 cut(s) 1490
BbvCI CCTCAGC 1 cut(s) 214
BbvI GCAGC 6 cut(s) 123, 242, 265, 844, 1246, 1590
BccI CCATC 6 cut(s) 289, 401, 475, 542, 704, 782
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BclI TGATCA 2 cut(s) 505, 682
BcoDI GTCTC 3 cut(s) 128, 797, 1655
BfaI CTAG 2 cut(s) 560, 647
BglII AGATCT 1 cut(s) 1502
BisI GCNGC 8 cut(s) 112, 231, 279, 743, 858, 1235, 1579, 1618
BlpI GCTNAGC 1 cut(s) 715
BlsI GCNGC 8 cut(s) 113, 232, 280, 744, 859, 1236, 1580, 1619
Bme18I GGWCC 1 cut(s) 164
BmeT110I CYCGRG 2 cut(s) 115, 1483
BmgT120I GGNCC 3 cut(s) 164, 579, 939
BmiI GGNNCC 3 cut(s) 166, 441, 1458
BmsI GCATC 2 cut(s) 791, 829
BpiI GAAGAC 2 cut(s) 51, 345
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 1 cut(s) 1355
Bpu10I CCTNAGC 1 cut(s) 214
Bpu1102I GCTNAGC 1 cut(s) 715
BpuEI CTTGAG 1 cut(s) 1061
Bsa29I ATCGAT 2 cut(s) 464, 1173
BsaAI YACGTR 1 cut(s) 776
BsaHI GRCGYC 1 cut(s) 1081
BsaI GGTCTC 1 cut(s) 797
BsaJI CCNNGG 3 cut(s) 375, 946, 1670
BsaXI ACNNNNNCTCC 2 cut(s) 743, 773
Bsc4I CCNNNNNNNGG 7 cut(s) 102, 932, 948, 1552, 1553, 1616, 1695
Bse1I ACTGG 3 cut(s) 90, 1023, 1460
Bse3DI GCAATG 2 cut(s) 867, 1190
BseCI ATCGAT 2 cut(s) 464, 1173
BseDI CCNNGG 3 cut(s) 375, 946, 1670
BseGI GGATG 1 cut(s) 1300
BseLI CCNNNNNNNGG 7 cut(s) 102, 932, 948, 1552, 1553, 1616, 1695
BseMI GCAATG 2 cut(s) 867, 1190
BseMII CTCAG 5 cut(s) 63, 228, 729, 808, 990
BseNI ACTGG 3 cut(s) 90, 1023, 1460
BseRI GAGGAG 2 cut(s) 764, 1599
BseXI GCAGC 6 cut(s) 123, 242, 265, 844, 1246, 1590
BseYI CCCAGC 2 cut(s) 47, 65
BsgI GTGCAG 3 cut(s) 249, 352, 1515
Bsh1236I CGCG 1 cut(s) 1617
BshFI GGCC 3 cut(s) 184, 580, 941
BshVI ATCGAT 2 cut(s) 464, 1173
BsiHKAI GWGCWC 1 cut(s) 1490
BsiHKCI CYCGRG 2 cut(s) 115, 1483
BslFI GGGAC 2 cut(s) 82, 965
BslI CCNNNNNNNGG 7 cut(s) 102, 932, 948, 1552, 1553, 1616, 1695
BsmAI GTCTC 3 cut(s) 128, 797, 1655
BsmFI GGGAC 2 cut(s) 82, 965
BsmI GAATGC 2 cut(s) 839, 1346
BsnI GGCC 3 cut(s) 184, 580, 941
Bso31I GGTCTC 1 cut(s) 797
BsoBI CYCGRG 2 cut(s) 115, 1483
Bsp1286I GDGCHC 1 cut(s) 1490
Bsp143I GATC 9 cut(s) 122, 505, 584, 682, 1015, 1170, 1502, 1738, 1770
Bsp1720I GCTNAGC 1 cut(s) 715
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 4 cut(s) 742, 1126, 1576, 1617
BspANI GGCC 3 cut(s) 184, 580, 941
BspCNI CTCAG 5 cut(s) 64, 227, 728, 807, 989
BspDI ATCGAT 2 cut(s) 464, 1173
BspFNI CGCG 1 cut(s) 1617
BspHI TCATGA 2 cut(s) 567, 597
BspLI GGNNCC 3 cut(s) 166, 441, 1458
BspPI GGATC 2 cut(s) 1746, 1778
BspTNI GGTCTC 1 cut(s) 797
BsrBI CCGCTC 1 cut(s) 1128
BsrDI GCAATG 2 cut(s) 867, 1190
BsrI ACTGG 3 cut(s) 90, 1023, 1460
BssECI CCNNGG 3 cut(s) 375, 946, 1670
BssMI GATC 9 cut(s) 122, 505, 584, 682, 1015, 1170, 1502, 1738, 1770
BssNI GRCGYC 1 cut(s) 1081
BssT1I CCWWGG 3 cut(s) 375, 946, 1670
Bst4CI ACNGT 6 cut(s) 429, 736, 1055, 1097, 1117, 1690
Bst6I CTCTTC 6 cut(s) 149, 231, 927, 1081, 1627, 1759
BstACI GRCGYC 1 cut(s) 1081
BstBAI YACGTR 1 cut(s) 776
BstC8I GCNNGC 7 cut(s) 182, 578, 609, 620, 943, 1197, 1363
BstDEI CTNAG 7 cut(s) 72, 214, 715, 794, 927, 976, 1165
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 1 cut(s) 1300
BstFNI CGCG 1 cut(s) 1617
BstKTI GATC 9 cut(s) 125, 508, 587, 685, 1018, 1173, 1505, 1741, 1773
BstMAI GTCTC 3 cut(s) 128, 797, 1655
BstMBI GATC 9 cut(s) 122, 505, 584, 682, 1015, 1170, 1502, 1738, 1770
BstMWI GCNNNNNNNGC 4 cut(s) 287, 863, 1196, 1205
BstNSI RCATGY 2 cut(s) 346, 1034
BstUI CGCG 1 cut(s) 1617
BstV1I GCAGC 6 cut(s) 123, 242, 265, 844, 1246, 1590
BstV2I GAAGAC 2 cut(s) 51, 345
BstX2I RGATCY 1 cut(s) 1502
BstXI CCANNNNNNTGG 2 cut(s) 175, 1766
BstYI RGATCY 1 cut(s) 1502
Bsu15I ATCGAT 2 cut(s) 464, 1173
BsuRI GGCC 3 cut(s) 184, 580, 941
BsuTUI ATCGAT 2 cut(s) 464, 1173
BtgI CCRYGG 1 cut(s) 375
BtsCI GGATG 1 cut(s) 1300
BtsIMutI CAGTG 5 cut(s) 97, 802, 1030, 1441, 1479
Cac8I GCNNGC 7 cut(s) 182, 578, 609, 620, 943, 1197, 1363
CaiI CAGNNNCTG 1 cut(s) 353
CciI TCATGA 2 cut(s) 567, 597
Cfr13I GGNCC 3 cut(s) 164, 579, 939
ClaI ATCGAT 2 cut(s) 464, 1173
CseI GACGC 1 cut(s) 1070
Csp6I GTAC 3 cut(s) 770, 804, 1285
CviAII CATG 7 cut(s) 343, 376, 568, 598, 1031, 1146, 1721
CviQI GTAC 3 cut(s) 770, 804, 1285
DdeI CTNAG 7 cut(s) 72, 214, 715, 794, 927, 976, 1165
DpnI GATC 9 cut(s) 124, 507, 586, 684, 1017, 1172, 1504, 1740, 1772
DpnII GATC 9 cut(s) 122, 505, 584, 682, 1015, 1170, 1502, 1738, 1770
DraI TTTAAA 1 cut(s) 1230
Eam1104I CTCTTC 6 cut(s) 149, 231, 927, 1081, 1627, 1759
EarI CTCTTC 6 cut(s) 149, 231, 927, 1081, 1627, 1759
Eco130I CCWWGG 3 cut(s) 375, 946, 1670
Eco31I GGTCTC 1 cut(s) 797
Eco32I GATATC 1 cut(s) 592
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 2 cut(s) 45, 255
Eco72I CACGTG 1 cut(s) 776
Eco88I CYCGRG 2 cut(s) 115, 1483
EcoO109I RGGNCCY 2 cut(s) 164, 939
EcoRV GATATC 1 cut(s) 592
EcoT14I CCWWGG 3 cut(s) 375, 946, 1670
ErhI CCWWGG 3 cut(s) 375, 946, 1670
FaeI CATG 7 cut(s) 346, 379, 571, 601, 1034, 1149, 1724
FaqI GGGAC 2 cut(s) 82, 965
FatI CATG 7 cut(s) 342, 375, 567, 597, 1030, 1145, 1720
FbaI TGATCA 2 cut(s) 505, 682
Fnu4HI GCNGC 8 cut(s) 112, 231, 279, 743, 858, 1235, 1579, 1618
FokI GGATG 1 cut(s) 1307
Fsp4HI GCNGC 8 cut(s) 112, 231, 279, 743, 858, 1235, 1579, 1618
FspBI CTAG 2 cut(s) 560, 647
GluI GCNGC 8 cut(s) 112, 231, 279, 743, 858, 1235, 1579, 1618
GsaI CCCAGC 2 cut(s) 51, 69
GsuI CTGGAG 1 cut(s) 1355
HaeIII GGCC 3 cut(s) 184, 580, 941
HgaI GACGC 1 cut(s) 1070
Hin1I GRCGYC 1 cut(s) 1081
Hin1II CATG 7 cut(s) 346, 379, 571, 601, 1034, 1149, 1724
HincII GTYRAC 1 cut(s) 1600
HindII GTYRAC 1 cut(s) 1600
HindIII AAGCTT 2 cut(s) 6, 620
HinfI GANTC 7 cut(s) 74, 86, 98, 601, 905, 1635, 1751
HphI GGTGA 3 cut(s) 347, 388, 981
Hpy166II GTNNAC 3 cut(s) 1028, 1387, 1600
Hpy188I TCNGA 6 cut(s) 454, 589, 787, 846, 979, 1746
Hpy8I GTNNAC 3 cut(s) 1028, 1387, 1600
Hpy99I CGWCG 2 cut(s) 1086, 1617
HpyAV CCTTC 5 cut(s) 459, 698, 1447, 1688, 1741
HpyCH4III ACNGT 6 cut(s) 429, 736, 1055, 1097, 1117, 1690
HpyCH4IV ACGT 2 cut(s) 775, 1780
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 863, 1196, 1205
HpyF3I CTNAG 7 cut(s) 72, 214, 715, 794, 927, 976, 1165
HpySE526I ACGT 2 cut(s) 775, 1780
Hsp92I GRCGYC 1 cut(s) 1081
Hsp92II CATG 7 cut(s) 346, 379, 571, 601, 1034, 1149, 1724
Ksp22I TGATCA 2 cut(s) 505, 682
Kzo9I GATC 9 cut(s) 122, 505, 584, 682, 1015, 1170, 1502, 1738, 1770
LmnI GCTCC 1 cut(s) 1133
Lsp1109I GCAGC 6 cut(s) 123, 242, 265, 844, 1246, 1590
LweI GCATC 2 cut(s) 791, 829
MaeI CTAG 2 cut(s) 560, 647
MaeII ACGT 2 cut(s) 775, 1780
MaeIII GTNAC 4 cut(s) 1091, 1097, 1423, 1462
MalI GATC 9 cut(s) 124, 507, 586, 684, 1017, 1172, 1504, 1740, 1772
MbiI CCGCTC 1 cut(s) 1128
MboI GATC 9 cut(s) 122, 505, 584, 682, 1015, 1170, 1502, 1738, 1770
MflI RGATCY 1 cut(s) 1502
MhlI GDGCHC 1 cut(s) 1490
MluCI AATT 8 cut(s) 200, 285, 323, 414, 492, 518, 1278, 1645
MlyI GAGTC 4 cut(s) 83, 107, 1644, 1745
MmeI TCCRAC 2 cut(s) 417, 1279
MroXI GAANNNNTTC 1 cut(s) 921
MseI TTAA 3 cut(s) 852, 1229, 1538
MslI CAYNNNNRTG 2 cut(s) 374, 1764
MspA1I CMGCKG 4 cut(s) 65, 218, 233, 742
Mva1269I GAATGC 2 cut(s) 839, 1346
MvnI CGCG 1 cut(s) 1617
MwoI GCNNNNNNNGC 4 cut(s) 287, 863, 1196, 1205
NcoI CCATGG 1 cut(s) 375
NdeII GATC 9 cut(s) 122, 505, 584, 682, 1015, 1170, 1502, 1738, 1770
NlaIII CATG 7 cut(s) 346, 379, 571, 601, 1034, 1149, 1724
NlaIV GGNNCC 3 cut(s) 166, 441, 1458
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 3 cut(s) 1091, 1097, 1462
NspI RCATGY 2 cut(s) 346, 1034
PaeR7I CTCGAG 2 cut(s) 115, 1483
PagI TCATGA 2 cut(s) 567, 597
PciI ACATGT 2 cut(s) 342, 1030
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PctI GAATGC 2 cut(s) 839, 1346
PdmI GAANNNNTTC 1 cut(s) 921
PfeI GAWTC 3 cut(s) 86, 601, 905
PflFI GACNNNGTC 1 cut(s) 73
PkrI GCNGC 8 cut(s) 113, 232, 280, 744, 859, 1236, 1580, 1619
PleI GAGTC 4 cut(s) 82, 106, 1643, 1745
PmaCI CACGTG 1 cut(s) 776
PmlI CACGTG 1 cut(s) 776
PpsI GAGTC 4 cut(s) 82, 106, 1643, 1745
Ppu21I YACGTR 1 cut(s) 776
PpuMI RGGWCCY 1 cut(s) 164
PscI ACATGT 2 cut(s) 342, 1030
Psp5II RGGWCCY 1 cut(s) 164
PspCI CACGTG 1 cut(s) 776
PspFI CCCAGC 2 cut(s) 47, 65
PspN4I GGNNCC 3 cut(s) 166, 441, 1458
PspPI GGNCC 3 cut(s) 164, 579, 939
PspPPI RGGWCCY 1 cut(s) 164
PspXI VCTCGAGB 2 cut(s) 115, 1483
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 1 cut(s) 1502
PsyI GACNNNGTC 1 cut(s) 73
PvuII CAGCTG 3 cut(s) 65, 218, 233
RsaI GTAC 3 cut(s) 771, 805, 1286
RsaNI GTAC 3 cut(s) 770, 804, 1285
RseI CAYNNNNRTG 2 cut(s) 374, 1764
SaqAI TTAA 3 cut(s) 852, 1229, 1538
SatI GCNGC 8 cut(s) 112, 231, 279, 743, 858, 1235, 1579, 1618
Sau3AI GATC 9 cut(s) 122, 505, 584, 682, 1015, 1170, 1502, 1738, 1770
Sau96I GGNCC 3 cut(s) 164, 579, 939
SchI GAGTC 4 cut(s) 83, 107, 1644, 1745
SduI GDGCHC 1 cut(s) 1490
SfaNI GCATC 2 cut(s) 791, 829
Sfr274I CTCGAG 2 cut(s) 115, 1483
SinI GGWCC 1 cut(s) 164
SlaI CTCGAG 2 cut(s) 115, 1483
SmiMI CAYNNNNRTG 2 cut(s) 374, 1764
SmlI CTYRAG 3 cut(s) 115, 1040, 1483
SmoI CTYRAG 3 cut(s) 115, 1040, 1483
Sse9I AATT 8 cut(s) 200, 285, 323, 414, 492, 518, 1278, 1645
SsiI CCGC 4 cut(s) 742, 1126, 1576, 1617
SspI AATATT 1 cut(s) 1071
SspMI CTAG 2 cut(s) 560, 647
StyI CCWWGG 3 cut(s) 375, 946, 1670
TaaI ACNGT 6 cut(s) 429, 736, 1055, 1097, 1117, 1690
TaiI ACGT 2 cut(s) 778, 1783
TaqI TCGA 9 cut(s) 101, 116, 125, 464, 1084, 1173, 1447, 1484, 1659
TaqII GACCGA 1 cut(s) 98
TasI AATT 8 cut(s) 200, 285, 323, 414, 492, 518, 1278, 1645
TatI WGTACW 2 cut(s) 803, 1284
TauI GCSGC 2 cut(s) 745, 1620
TfiI GAWTC 3 cut(s) 86, 601, 905
Tru1I TTAA 3 cut(s) 852, 1229, 1538
Tru9I TTAA 3 cut(s) 852, 1229, 1538
TscAI CASTG 5 cut(s) 97, 802, 1030, 1441, 1479
TseFI GTSAC 3 cut(s) 1091, 1097, 1462
TseI GCWGC 6 cut(s) 111, 230, 278, 857, 1234, 1578
Tsp45I GTSAC 3 cut(s) 1091, 1097, 1462
TspDTI ATGAA 3 cut(s) 320, 586, 614
TspRI CASTG 5 cut(s) 97, 802, 1030, 1441, 1479
Tth111I GACNNNGTC 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 1 cut(s) 1278
XceI RCATGY 2 cut(s) 346, 1034
XhoI CTCGAG 2 cut(s) 115, 1483
XmnI GAANNNNTTC 1 cut(s) 921
XspI CTAG 2 cut(s) 560, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.