MD07G1207700.v1.1

Rop guanine nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
28694901 .. 28698537
3637 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1207700.v1.1.491

Sequence Viewer

Length: 1827 bp
ATGGAGTCTTTAACGAGAAAAAGGGAGAATATGCAGAAGAAAAGAACTGGGTTTGTCAAGTCTTCAGCTAACAATGTCGGTGGAGGAAGCGAGTCGCTCACCGATTCGAGCGGCGGAGACTCGAGAGAGACAAGCAGTACCAGCCGATCGAGCCCCGAGACTTCCGGTGAGGAAGTGAAAAGAAAAGGGCCTTCTTCTTCGCCGCCGCTGTTGGGATGGCCGATCAGGAAAGCTGAGCTGTGTAAGAACTCGGTTGCTGATTTGGGTGAAGCTGAACGAAAAGCCCCTGTTGATGATTGCAATTACAAGGATTTGGCTTCCAAAATTGCAGAGATGGACATGATGAGAGAGAGATTTTCAAAATTGTTACTTGGAGAAGACATGTCAGGTTGTGGCAAAGGGGTTTGCACAGCGATGGCTATTTCGAATGCCATTACCAATCTCTGTGCTACCATTTTTGGGCAACTGTGGAGATTGGAACCCTTGCCTGCTGAAAAGAAATCAATGTGGAAAAGAGAGATGGAATCGCTAATTTGCGTCACCGACCATATTGTTGAATTGATACCTTCTTGGCAAACACTTCCTGATGGAAAAAAGCTTGAGGTCATGACTTGCAGGCCCCGATCAGATCTATTTATGAATCTTCCAGCGCTGCGTAAGCTAGACAATATGCTTCTTGAAATATTAGATAGTTTCACCAATACGGAGTTCTGGTATGTTGATCAAGGAGTTATGGCCCCTGAATCAGATGGCTCAGCCTCTTTTCGCAAAACAGTCCAGCGGCAAGAGGAGAAGTGGTGGTTACCTGTACCTCGCGTGGCAGCTGAAGGTCTCAGTGAAAGTTCAAGAAAGCAGTTGCAACACACGCGGGAATGCACAAATCAAATACTAAAAGCTGCAATGGCTATCAACAGCATTACTCTTGCAGAAATGGAAGTTCCAGAGTCGTACTTGGAAACTCTTCCCAAGAACGGAAGGGCCTGTCTTGGGGACATAATTTACCGATATATTACATCAGACAAATTCTCCCCAGAGTTTTTGCTTGACTGCCTTGACCTGTCCAGCGAACATGTTGCTCTAGAGATTGCAAACCGTGTTGAAGCGTCTATATTTGTCTGGCGTAGAAGAACTCACTCAAAGCCCCCACCTTATCCAAACCGCTCCTCCACAAAGTCATCTTGGGAGATAGTCAAGGACCTAGTGATCGATCTGGATAAGCGAGAATTACTGGCAGAAAGAGCTGAAAGCCTCCTGCTTTCCTTGAAGCAGCGGTTTCCTTGTCTTACTCAGACTATCTTGGACACCAGCAAGATTCAGTGCAACAAGGATGTTGGAAAGTCCATTCTTGAAAGCTATTCAAGAGTTTTGGAAAGCCTGGCATTTAACATTGTGGCTCGTATTGAAGATTTACTATATGTGGACGACTTGGCAAAGCAGACAGATAAACTATCATCAGTTGCTGCAGTCAGTGTAATTTCTCGCAAGAAGGTCTCGGTTTCATATCCAGTGCCTGCCCCAAGCACTCCTCACAAAAGATCTTCTGCCACGCCTAACTTGCCACCTGCACCTTCAATTAGCCCTGTAAGGGGAGAGAGGACTCCCTTTCTCCACACCAATAACAACAAGGACAAGCCTCCCCGACGCAGTTTTGGAGTGAGGAGAGTCTTGACTAATTACCTTGGTGTTGAAATAAAAGCAAGAATCTGCAGCAACACAATGGAAGGGTCAGTTTCGATACCAAACTTACATGGCACAGAAACTTTGGATCGTCTTAAGGATTCCTTGCCCCACCAAAATGGGAGAAAATCAAACGAAGCAGATCGCTGA

Protein Analysis

609

Amino Acids

67.96

Weight (kDa)

8.71

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 111 - 478 2.4e-183 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1570
Acc36I ACCTGC 1 cut(s) 1570
AccBSI CCGCTC 2 cut(s) 111, 1161
AccII CGCG 2 cut(s) 816, 868
AciI CCGC 8 cut(s) 111, 114, 203, 206, 781, 868, 1159, 1270
AclWI GGATC 1 cut(s) 1773
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 1 cut(s) 1022
AcuI CTGAAG 2 cut(s) 48, 846
AfaI GTAC 3 cut(s) 139, 810, 950
AfeI AGCGCT 1 cut(s) 651
AfiI CCNNNNNNNGG 6 cut(s) 212, 459, 971, 987, 1585, 1586
AflII CTTAAG 1 cut(s) 1772
AflIII ACRYGT 2 cut(s) 381, 1069
AjnI CCWGG 1 cut(s) 1374
AjuI GAANNNNNNNTTGG 2 cut(s) 692, 724
Alw26I GTCTC 5 cut(s) 111, 122, 152, 836, 1495
AlwI GGATC 1 cut(s) 1773
AlwNI CAGNNNCTG 2 cut(s) 1460, 1511
Ama87I CYCGRG 2 cut(s) 121, 155
Aor51HI AGCGCT 1 cut(s) 651
AoxI GGCC 5 cut(s) 188, 218, 617, 735, 978
ApeKI GCWGC 6 cut(s) 652, 821, 896, 1267, 1460, 1707
ApoI RAATTY 1 cut(s) 1022
Asp700I GAANNNNTTC 1 cut(s) 960
AspLEI GCGC 1 cut(s) 652
AspS9I GGNCC 5 cut(s) 188, 618, 736, 978, 1195
AsuHPI GGTGA 5 cut(s) 91, 179, 278, 532, 688
AsuII TTCGAA 1 cut(s) 425
AvaI CYCGRG 2 cut(s) 121, 155
AvaII GGWCC 1 cut(s) 1195
BanII GRGCYC 1 cut(s) 155
BbsI GAAGAC 2 cut(s) 54, 384
BbvI GCAGC 6 cut(s) 639, 833, 883, 1279, 1447, 1719
BccI CCATC 6 cut(s) 210, 328, 409, 514, 581, 743
BcgI CGANNNNNNTGC 2 cut(s) 1055, 1089
BciT130I CCWGG 1 cut(s) 1376
BclI TGATCA 1 cut(s) 721
BcoDI GTCTC 5 cut(s) 111, 122, 152, 836, 1495
BfaI CTAG 3 cut(s) 662, 1079, 1199
BfmI CTRYAG 2 cut(s) 1461, 1705
BfoI RGCGCY 1 cut(s) 653
BfrI CTTAAG 1 cut(s) 1772
BfuAI ACCTGC 1 cut(s) 1570
BglII AGATCT 2 cut(s) 628, 1535
BlpI GCTNAGC 2 cut(s) 234, 754
Bme1390I CCNGG 1 cut(s) 1376
Bme18I GGWCC 1 cut(s) 1195
BmeT110I CYCGRG 2 cut(s) 121, 155
BmgT120I GGNCC 5 cut(s) 188, 618, 736, 978, 1195
BmiI GGNNCC 3 cut(s) 480, 620, 738
BmrFI CCNGG 1 cut(s) 1376
BmrI ACTGGG 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 57
BpiI GAAGAC 2 cut(s) 54, 384
Bpu1102I GCTNAGC 2 cut(s) 234, 754
Bpu14I TTCGAA 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 620
Bsa29I ATCGAT 1 cut(s) 1206
BsaI GGTCTC 2 cut(s) 836, 1495
BsaJI CCNNGG 1 cut(s) 1678
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 8 cut(s) 698, 728, 782, 812, 1010, 1040, 1148, 1178
Bsc4I CCNNNNNNNGG 6 cut(s) 212, 459, 971, 987, 1585, 1586
Bse1I ACTGG 3 cut(s) 52, 1233, 1505
Bse3DI GCAATG 1 cut(s) 906
BseBI CCWGG 1 cut(s) 1376
BseCI ATCGAT 1 cut(s) 1206
BseDI CCNNGG 1 cut(s) 1678
BseGI GGATG 2 cut(s) 221, 1333
BseLI CCNNNNNNNGG 6 cut(s) 212, 459, 971, 987, 1585, 1586
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 4 cut(s) 225, 768, 847, 1301
BseNI ACTGG 3 cut(s) 52, 1233, 1505
BseRI GAGGAG 4 cut(s) 803, 1153, 1515, 1672
BseXI GCAGC 6 cut(s) 639, 833, 883, 1279, 1447, 1719
BsgI GTGCAG 1 cut(s) 1548
Bsh1236I CGCG 2 cut(s) 816, 868
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 5 cut(s) 190, 220, 619, 737, 980
BshVI ATCGAT 1 cut(s) 1206
BsiEI CGRYCG 1 cut(s) 149
BsiHKCI CYCGRG 2 cut(s) 121, 155
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 1004
BslI CCNNNNNNNGG 6 cut(s) 212, 459, 971, 987, 1585, 1586
BsmAI GTCTC 5 cut(s) 111, 122, 152, 836, 1495
BsmFI GGGAC 1 cut(s) 1004
BsmI GAATGC 2 cut(s) 433, 878
BsnI GGCC 5 cut(s) 190, 220, 619, 737, 980
Bso31I GGTCTC 2 cut(s) 836, 1495
BsoBI CYCGRG 2 cut(s) 121, 155
Bsp119I TTCGAA 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 155
Bsp1720I GCTNAGC 2 cut(s) 234, 754
BspACI CCGC 8 cut(s) 111, 114, 203, 206, 781, 868, 1159, 1270
BspANI GGCC 5 cut(s) 190, 220, 619, 737, 980
BspCNI CTCAG 4 cut(s) 226, 767, 846, 1300
BspDI ATCGAT 1 cut(s) 1206
BspFNI CGCG 2 cut(s) 816, 868
BspHI TCATGA 1 cut(s) 606
BspLI GGNNCC 3 cut(s) 480, 620, 738
BspMAI CTGCAG 2 cut(s) 1465, 1709
BspMI ACCTGC 1 cut(s) 1570
BspPI GGATC 1 cut(s) 1773
BspT104I TTCGAA 1 cut(s) 425
BspTI CTTAAG 1 cut(s) 1772
BspTNI GGTCTC 2 cut(s) 836, 1495
BsrBI CCGCTC 2 cut(s) 111, 1161
BsrDI GCAATG 1 cut(s) 906
BsrI ACTGG 3 cut(s) 52, 1233, 1505
BssECI CCNNGG 1 cut(s) 1678
BssT1I CCWWGG 1 cut(s) 1678
Bst2UI CCWGG 1 cut(s) 1376
Bst4CI ACNGT 3 cut(s) 468, 775, 1094
Bst6I CTCTTC 1 cut(s) 966
BstAFI CTTAAG 1 cut(s) 1772
BstBI TTCGAA 1 cut(s) 425
BstC8I GCNNGC 3 cut(s) 489, 617, 1512
BstDEI CTNAG 4 cut(s) 234, 754, 833, 1287
BstEII GGTNACC 1 cut(s) 801
BstF5I GGATG 2 cut(s) 221, 1333
BstFNI CGCG 2 cut(s) 816, 868
BstH2I RGCGCY 1 cut(s) 653
BstHHI GCGC 1 cut(s) 652
BstMAI GTCTC 5 cut(s) 111, 122, 152, 836, 1495
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 7 cut(s) 141, 150, 658, 865, 902, 1238, 1555
BstNI CCWGG 1 cut(s) 1376
BstNSI RCATGY 2 cut(s) 385, 1073
BstPI GGTNACC 1 cut(s) 801
BstSCI CCNGG 1 cut(s) 1374
BstSFI CTRYAG 2 cut(s) 1461, 1705
BstUI CGCG 2 cut(s) 816, 868
BstV1I GCAGC 6 cut(s) 639, 833, 883, 1279, 1447, 1719
BstV2I GAAGAC 2 cut(s) 54, 384
BstX2I RGATCY 2 cut(s) 628, 1535
BstXI CCANNNNNNTGG 1 cut(s) 1796
BstYI RGATCY 2 cut(s) 628, 1535
Bsu15I ATCGAT 1 cut(s) 1206
BsuRI GGCC 5 cut(s) 190, 220, 619, 737, 980
BsuTUI ATCGAT 1 cut(s) 1206
BtgZI GCGATG 1 cut(s) 428
BtsCI GGATG 2 cut(s) 221, 1333
BtsIMutI CAGTG 4 cut(s) 841, 1322, 1474, 1512
BveI ACCTGC 1 cut(s) 1570
Cac8I GCNNGC 3 cut(s) 489, 617, 1512
CaiI CAGNNNCTG 2 cut(s) 1460, 1511
CciI TCATGA 1 cut(s) 606
CfoI GCGC 1 cut(s) 652
Cfr13I GGNCC 5 cut(s) 188, 618, 736, 978, 1195
ClaI ATCGAT 1 cut(s) 1206
CseI GACGC 3 cut(s) 526, 1092, 1650
Csp6I GTAC 3 cut(s) 138, 809, 949
CspCI CAANNNNNGTGG 2 cut(s) 61, 96
CviAII CATG 5 cut(s) 340, 382, 607, 1070, 1748
CviQI GTAC 3 cut(s) 138, 809, 949
DdeI CTNAG 4 cut(s) 234, 754, 833, 1287
EaeI YGGCCR 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 966
EarI CTCTTC 1 cut(s) 966
EciI GGCGGA 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 1678
Eco24I GRGCYC 1 cut(s) 155
Eco31I GGTCTC 2 cut(s) 836, 1495
Eco47I GGWCC 1 cut(s) 1195
Eco47III AGCGCT 1 cut(s) 651
Eco57I CTGAAG 2 cut(s) 48, 846
Eco88I CYCGRG 2 cut(s) 121, 155
Eco91I GGTNACC 1 cut(s) 801
EcoO109I RGGNCCY 4 cut(s) 188, 618, 978, 1195
EcoO65I GGTNACC 1 cut(s) 801
EcoRII CCWGG 1 cut(s) 1374
EcoT14I CCWWGG 1 cut(s) 1678
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 1678
FaeI CATG 5 cut(s) 343, 385, 610, 1073, 1751
FalI AAGNNNNNCTT 2 cut(s) 1766, 1798
FaqI GGGAC 1 cut(s) 1004
FatI CATG 5 cut(s) 339, 381, 606, 1069, 1747
FauI CCCGC 1 cut(s) 861
FbaI TGATCA 1 cut(s) 721
FokI GGATG 2 cut(s) 228, 1340
FriOI GRGCYC 1 cut(s) 155
FspBI CTAG 3 cut(s) 662, 1079, 1199
GlaI GCGC 1 cut(s) 651
HaeII RGCGCY 1 cut(s) 653
HaeIII GGCC 5 cut(s) 190, 220, 619, 737, 980
HapII CCGG 1 cut(s) 165
HgaI GACGC 3 cut(s) 526, 1092, 1650
HhaI GCGC 1 cut(s) 652
Hin1II CATG 5 cut(s) 343, 385, 610, 1073, 1751
Hin6I GCGC 1 cut(s) 650
HinP1I GCGC 1 cut(s) 650
HindIII AAGCTT 1 cut(s) 596
HpaII CCGG 1 cut(s) 165
HphI GGTGA 5 cut(s) 91, 179, 278, 532, 688
Hpy166II GTNNAC 1 cut(s) 1420
Hpy188I TCNGA 4 cut(s) 628, 748, 1018, 1290
Hpy8I GTNNAC 1 cut(s) 1420
Hpy99I CGWCG 1 cut(s) 1644
HpyAV CCTTC 7 cut(s) 201, 576, 821, 969, 1480, 1578, 1715
HpyCH4III ACNGT 3 cut(s) 468, 775, 1094
HpyF10VI GCNNNNNNNGC 7 cut(s) 141, 150, 658, 865, 902, 1238, 1555
HpyF3I CTNAG 4 cut(s) 234, 754, 833, 1287
Hsp92II CATG 5 cut(s) 343, 385, 610, 1073, 1751
HspAI GCGC 1 cut(s) 650
Ksp22I TGATCA 1 cut(s) 721
LmnI GCTCC 1 cut(s) 1166
Lsp1109I GCAGC 6 cut(s) 639, 833, 883, 1279, 1447, 1719
MaeI CTAG 3 cut(s) 662, 1079, 1199
MaeIII GTNAC 3 cut(s) 366, 538, 801
MbiI CCGCTC 2 cut(s) 111, 1161
MflI RGATCY 2 cut(s) 628, 1535
MhlI GDGCHC 1 cut(s) 155
MlyI GAGTC 6 cut(s) 14, 101, 113, 953, 1591, 1671
MmeI TCCRAC 1 cut(s) 1312
MroXI GAANNNNTTC 1 cut(s) 960
MseI TTAA 3 cut(s) 11, 1383, 1773
MslI CAYNNNNRTG 2 cut(s) 413, 1794
MspA1I CMGCKG 4 cut(s) 208, 781, 824, 1270
MspCI CTTAAG 1 cut(s) 1772
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 1376
Mva1269I GAATGC 2 cut(s) 433, 878
MvaI CCWGG 1 cut(s) 1376
MvnI CGCG 2 cut(s) 816, 868
MwoI GCNNNNNNNGC 7 cut(s) 141, 150, 658, 865, 902, 1238, 1555
NlaIII CATG 5 cut(s) 343, 385, 610, 1073, 1751
NlaIV GGNNCC 3 cut(s) 480, 620, 738
NmuCI GTSAC 1 cut(s) 538
NspI RCATGY 2 cut(s) 385, 1073
NspV TTCGAA 1 cut(s) 425
PaeR7I CTCGAG 1 cut(s) 121
PagI TCATGA 1 cut(s) 606
PaqCI CACCTGC 1 cut(s) 1570
PciI ACATGT 2 cut(s) 381, 1069
PctI GAATGC 2 cut(s) 433, 878
PdmI GAANNNNTTC 1 cut(s) 960
PfeI GAWTC 7 cut(s) 104, 524, 640, 743, 1312, 1701, 1778
Ple19I CGATCG 1 cut(s) 149
PleI GAGTC 6 cut(s) 13, 100, 113, 952, 1591, 1670
PpsI GAGTC 6 cut(s) 13, 100, 113, 952, 1591, 1670
PpuMI RGGWCCY 1 cut(s) 1195
PscI ACATGT 2 cut(s) 381, 1069
Psp5II RGGWCCY 1 cut(s) 1195
Psp6I CCWGG 1 cut(s) 1374
PspEI GGTNACC 1 cut(s) 801
PspGI CCWGG 1 cut(s) 1374
PspN4I GGNNCC 3 cut(s) 480, 620, 738
PspPI GGNCC 5 cut(s) 188, 618, 736, 978, 1195
PspPPI RGGWCCY 1 cut(s) 1195
PstI CTGCAG 2 cut(s) 1465, 1709
PstNI CAGNNNCTG 2 cut(s) 1460, 1511
PsuI RGATCY 2 cut(s) 628, 1535
PvuI CGATCG 1 cut(s) 149
PvuII CAGCTG 1 cut(s) 824
RsaI GTAC 3 cut(s) 139, 810, 950
RsaNI GTAC 3 cut(s) 138, 809, 949
RseI CAYNNNNRTG 2 cut(s) 413, 1794
SaqAI TTAA 3 cut(s) 11, 1383, 1773
Sau96I GGNCC 5 cut(s) 188, 618, 736, 978, 1195
SchI GAGTC 6 cut(s) 14, 101, 113, 953, 1591, 1671
ScrFI CCNGG 1 cut(s) 1376
SduI GDGCHC 1 cut(s) 155
SfcI CTRYAG 2 cut(s) 1461, 1705
Sfr274I CTCGAG 1 cut(s) 121
SfuI TTCGAA 1 cut(s) 425
SinI GGWCC 1 cut(s) 1195
SlaI CTCGAG 1 cut(s) 121
SmiMI CAYNNNNRTG 2 cut(s) 413, 1794
SmlI CTYRAG 3 cut(s) 121, 599, 1772
SmoI CTYRAG 3 cut(s) 121, 599, 1772
SsiI CCGC 8 cut(s) 111, 114, 203, 206, 781, 868, 1159, 1270
SspI AATATT 1 cut(s) 684
SspMI CTAG 3 cut(s) 662, 1079, 1199
StyD4I CCNGG 1 cut(s) 1374
StyI CCWWGG 1 cut(s) 1678
TaaI ACNGT 3 cut(s) 468, 775, 1094
TaqI TCGA 6 cut(s) 107, 122, 149, 425, 1206, 1733
TauI GCSGC 4 cut(s) 114, 205, 208, 784
TfiI GAWTC 7 cut(s) 104, 524, 640, 743, 1312, 1701, 1778
Tru1I TTAA 3 cut(s) 11, 1383, 1773
Tru9I TTAA 3 cut(s) 11, 1383, 1773
TscAI CASTG 4 cut(s) 841, 1322, 1474, 1512
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 6 cut(s) 652, 821, 896, 1267, 1460, 1707
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 2 cut(s) 653, 1488
TspGWI ACGGA 2 cut(s) 719, 987
TspRI CASTG 4 cut(s) 841, 1322, 1474, 1512
Vha464I CTTAAG 1 cut(s) 1772
VpaK11BI GGWCC 1 cut(s) 1195
XapI RAATTY 1 cut(s) 1022
XbaI TCTAGA 1 cut(s) 1078
XceI RCATGY 2 cut(s) 385, 1073
XhoI CTCGAG 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 960
XspI CTAG 3 cut(s) 662, 1079, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.