Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004250.1

Orthogroup ID

OG0010811

Physical Location & Seq

Genomic Coordinates Forward (+)

250609 .. 250941

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004250.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggaagctttatcgaagaaaagggagagttgtgagaaaaagagaagtagtgggttcaagtcttctgctgggaccgagtcaatgaccgattccagtgccgagtcgagagagagcagctcgagtagatcgagctcagagacttcgagtgaggaagggaagagaaaagggcccaactcgccggctctgttgggctggcctataaggaaagctgaattgtgcaaaacctcaactgctttagctgatttggatgaagctgaggagaaggaacatgttgatgattcaaagtataaggatttggctgccaaaattgcaggttggattctgttttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

110

Amino Acids

11.94

Weight (kDa)

5.92

Isoelectric Point (pI)

72.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05940 AT5G05940
fragaria_vesca	FvH4_7g23610 FvH4_7g23610
malus_domestica	MD01G1142000.v1.1 MD07G1207700.v1.1
prunus_persica	Prupe.2G243000_v2.0.a1
pyrus_communis	pycom01g16220 pycom07g19320
rosa_chinensis	RchiOBHm_Chr1g0368871
rosa_laevigata	RLG00000027181
rosa_multiflora	Rmu_co8451857.1_g000001 Rmu_sc0004250.1_g000050 Rmu_ssc0000142.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288250
rosa_rugosa	Rorug01G0345400
rosa_samantha	Rh1AG352500 Rh1BG316000 Rh1CG330700 Rh1DG347500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	302
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	58, 282
AluBI	AGCT	6 cut(s)	8, 117, 132, 209, 239, 254
AluI	AGCT	6 cut(s)	8, 117, 132, 209, 239, 254
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	118
AoxI	GGCC	2 cut(s)	167, 194
ApaI	GGGCCC	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	114, 299
AspS9I	GGNCC	3 cut(s)	72, 167, 168
AvaI	CYCGRG	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	72
BaeGI	GKGCMC	1 cut(s)	171
BanII	GRGCYC	2 cut(s)	134, 171
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	134
BbvCI	CCTCAGC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	126, 286
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BcoDI	GTCTC	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	2 cut(s)	115, 300
BlsI	GCNGC	2 cut(s)	116, 301
Bme18I	GGWCC	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	118
BmgT120I	GGNCC	3 cut(s)	72, 167, 168
BmiI	GGNNCC	2 cut(s)	73, 169
BpiI	GAAGAC	1 cut(s)	54
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
Bpu10I	CCTNAGC	1 cut(s)	255
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	253
BseMII	CTCAG	2 cut(s)	147, 246
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	126, 286
BseYI	CCCAGC	1 cut(s)	68
BshFI	GGCC	2 cut(s)	169, 196
BsiHKAI	GWGCWC	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	169, 196
BsoBI	CYCGRG	1 cut(s)	118
Bsp120I	GGGCCC	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	134, 171
Bsp143I	GATC	1 cut(s)	125
BspANI	GGCC	2 cut(s)	169, 196
BspCNI	CTCAG	2 cut(s)	146, 247
BspHI	TCATGA	1 cut(s)	329
BspLI	GGNNCC	2 cut(s)	73, 169
BspMI	ACCTGC	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	178
BssMI	GATC	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	180, 194
BstDEI	CTNAG	2 cut(s)	133, 255
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	1 cut(s)	128
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	125
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 308
BstNSI	RCATGY	1 cut(s)	272
BstSLI	GKGCMC	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	126, 286
BstV2I	GAAGAC	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	169, 196
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	180, 194
CciI	TCATGA	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	3 cut(s)	72, 167, 168
CviAII	CATG	2 cut(s)	269, 330
DdeI	CTNAG	2 cut(s)	133, 255
DpnI	GATC	1 cut(s)	127
DpnII	GATC	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Ecl136II	GAGCTC	1 cut(s)	132
Eco24I	GRGCYC	2 cut(s)	134, 171
Eco47I	GGWCC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	167
EcoT38I	GRGCYC	2 cut(s)	134, 171
FaeI	CATG	2 cut(s)	272, 333
FaiI	YATR	4 cut(s)	200, 270, 288, 331
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	2 cut(s)	268, 329
Fnu4HI	GCNGC	2 cut(s)	115, 300
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	2 cut(s)	134, 171
Fsp4HI	GCNGC	2 cut(s)	115, 300
GluI	GCNGC	2 cut(s)	115, 300
GsaI	CCCAGC	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	169, 196
HapII	CCGG	1 cut(s)	179
Hin1II	CATG	2 cut(s)	272, 333
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	5 cut(s)	77, 89, 101, 278, 319
HpaII	CCGG	1 cut(s)	179
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	105, 330
HpyAV	CCTTC	2 cut(s)	146, 256
HpyCH4V	TGCA	2 cut(s)	219, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 308
HpyF3I	CTNAG	2 cut(s)	133, 255
Hsp92II	CATG	2 cut(s)	272, 333
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	125
LpnPI	CCDG	5 cut(s)	54, 106, 178, 192, 297
Lsp1109I	GCAGC	2 cut(s)	126, 286
MalI	GATC	1 cut(s)	127
MboI	GATC	1 cut(s)	125
MboII	GAAGA	3 cut(s)	28, 54, 169
MhlI	GDGCHC	2 cut(s)	134, 171
MluCI	AATT	2 cut(s)	212, 306
MlyI	GAGTC	2 cut(s)	86, 110
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	3 cut(s)	142, 235, 250
MroNI	GCCGGC	1 cut(s)	178
MslI	CAYNNNNRTG	1 cut(s)	273
MspI	CCGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	175, 308
NaeI	GCCGGC	1 cut(s)	180
NdeII	GATC	1 cut(s)	125
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	272, 333
NlaIV	GGNNCC	2 cut(s)	73, 169
NmeAIII	GCCGAG	1 cut(s)	124
NspI	RCATGY	1 cut(s)	272
PaeR7I	CTCGAG	1 cut(s)	118
PagI	TCATGA	1 cut(s)	329
PciI	ACATGT	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PdiI	GCCGGC	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	89, 278, 319
PflFI	GACNNNGTC	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	116, 301
PleI	GAGTC	2 cut(s)	85, 109
PpsI	GAGTC	2 cut(s)	85, 109
PscI	ACATGT	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	73, 169
PspOMI	GGGCCC	1 cut(s)	167
PspPI	GGNCC	3 cut(s)	72, 167, 168
PspXI	VCTCGAGB	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	134
SatI	GCNGC	2 cut(s)	115, 300
Sau3AI	GATC	1 cut(s)	125
Sau96I	GGNCC	3 cut(s)	72, 167, 168
SchI	GAGTC	2 cut(s)	86, 110
SduI	GDGCHC	2 cut(s)	134, 171
SetI	ASST	8 cut(s)	10, 119, 134, 211, 227, 241, 256, 316
Sfr274I	CTCGAG	1 cut(s)	118
SinI	GGWCC	1 cut(s)	72
SlaI	CTCGAG	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	2 cut(s)	212, 306
SstI	GAGCTC	1 cut(s)	134
TaqI	TCGA	5 cut(s)	14, 104, 119, 128, 143
TaqII	GACCGA	2 cut(s)	89, 101
TasI	AATT	2 cut(s)	212, 306
TfiI	GAWTC	3 cut(s)	89, 278, 319
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	2 cut(s)	114, 299
TspDTI	ATGAA	2 cut(s)	264, 318
TspRI	CASTG	1 cut(s)	100
Tth111I	GACNNNGTC	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	72
XceI	RCATGY	1 cut(s)	272
XhoI	CTCGAG	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.