pycom07g19320

Rop guanine nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
21669421 .. 21671798
2378 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g19320.2

Sequence Viewer

Length: 1272 bp
ATGGAGTCTTTAACGAGAAAAAGGGAGAACTTGCAGAAGAAAAGAACTGGGTTTGTCAAGTCTTCAGCTAACAACGTCGGTGGAGGAAGCGAGTCACTCACCGATTCGAGCGGCGGAGACTCGAGAGAGACAAGCAGTACCAGCCGATCGAGCCCCGAGACTTCCGGTGAGGAAGTGAAAAGAAAAGGGCCTTCTTCTTCGCCGCTGCCGTTGGGATGGCCGATCAGGAAAGCTGAGCTGTGTAAGAACTCGGTTGCTGATTTGGGTGAAGCTGAACGAAAAGCCCCTGTTGATGATTGCAATTACAGGGACTTGGCTTCCAAAATTGCAGAGATGGATATGATGAGAGAGAGATTTTCAAAATTGTTGCTTGGAGAAGACATGTCAGGTTGTGGCAAAGGGGTTTGCACAGCGATGGCGATTTCGAATGCCATTACCAATCTCTGTGCTACCATTTTTGGGCAACTGTGGAGATTGGAACCCTTGCCTGCTGAAAAGAAATCAATGTGGAGAAGAGAGATGGAATCGCTAATCTGCGTCACCGACCATATTGTTGAATTGATACCTTCTTGGCAAACATTTCCTGATGGAAAAAAGCTTGAGGTCATGACTTGCAGGCCACGATCAGATCTATTTATGAATCTTCCAGGGCTGCGTAAGCTAGACAATATGCTGCTTGAAATATTAGATAGTTTCACCAATATGGAGTTCTGGTATGTTGATCAAGGAGTTATGGCCCCTGAAGCAGATGGCTCAGCCTCTTTTCGCAAAACAGTCCAGCGGCAAGAGGAGAAGTGGTGGTTACCTGTACCTCGCGTGGCAGCTGACGGTCTTAGTGAAAGTTCAAGAAAGCAGTTGCAACACACGCGGGAATGCACAAATCAAATACTAAAAGCTGCAATGGCTATCAACAGCATTACTCTTGCAGAAATGGAAGTTCCAGAGTCGTACTTGGAAACTCTTCCCAAGAATGGAAGGGCCTGTCTTGGGGACATAATTTACCGATATATTACATCAGACAAATTCTCCCCAGAGTTTTTGCTTGACTGCCTTGACCTGTCCAGCGAACATGTTGCTCTAGAGATTGCAAACCGTGTTGAAGCGTCAATATTTGTCTGGCGTAGACGAACTCACTCAAAGCCCCCACTTTATCCAAACCGCTCCTCCGCAAAGTCATCCTGGGAGATGGTCAAGGACCTAGTGATCGATCTGCCAACCCCGACAAGCGAGAATTGCTGGCAGAAAGAGCTGAAAGCCTCCTGCTTTCCTTGA

Protein Analysis

424

Amino Acids

47.55

Weight (kDa)

6.23

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 111, 1161
AccI GTMKAC 1 cut(s) 1123
AccII CGCG 2 cut(s) 816, 868
AciI CCGC 7 cut(s) 111, 114, 203, 781, 868, 1159, 1167
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 1 cut(s) 1022
AcuI CTGAAG 2 cut(s) 48, 762
AfaI GTAC 3 cut(s) 139, 810, 950
AfiI CCNNNNNNNGG 3 cut(s) 459, 971, 987
AflIII ACRYGT 2 cut(s) 381, 1069
AgsI TTSAA 5 cut(s) 360, 557, 680, 846, 1100
AjnI CCWGG 2 cut(s) 646, 1178
AjuI GAANNNNNNNTTGG 2 cut(s) 692, 724
AluBI AGCT 9 cut(s) 68, 233, 238, 272, 598, 661, 824, 896, 1249
AluI AGCT 9 cut(s) 68, 233, 238, 272, 598, 661, 824, 896, 1249
Alw26I GTCTC 3 cut(s) 111, 122, 152
Ama87I CYCGRG 2 cut(s) 121, 155
AoxI GGCC 5 cut(s) 188, 218, 617, 735, 978
ApeKI GCWGC 5 cut(s) 205, 652, 673, 821, 896
ApoI RAATTY 1 cut(s) 1022
Asp700I GAANNNNTTC 1 cut(s) 960
AspS9I GGNCC 4 cut(s) 188, 736, 978, 1195
AsuHPI GGTGA 5 cut(s) 91, 179, 278, 532, 688
AsuII TTCGAA 1 cut(s) 425
AvaI CYCGRG 2 cut(s) 121, 155
AvaII GGWCC 1 cut(s) 1195
BanII GRGCYC 1 cut(s) 155
BbsI GAAGAC 2 cut(s) 54, 384
BbvI GCAGC 5 cut(s) 192, 639, 660, 833, 883
BccI CCATC 7 cut(s) 210, 328, 409, 514, 581, 743, 1180
BceAI ACGGC 1 cut(s) 193
BcgI CGANNNNNNTGC 2 cut(s) 1055, 1089
BciT130I CCWGG 2 cut(s) 648, 1180
BclI TGATCA 1 cut(s) 721
BcoDI GTCTC 3 cut(s) 111, 122, 152
BfaI CTAG 3 cut(s) 662, 1079, 1199
BglII AGATCT 1 cut(s) 628
BisI GCNGC 8 cut(s) 112, 203, 206, 653, 674, 782, 822, 897
BlpI GCTNAGC 2 cut(s) 234, 754
BlsI GCNGC 8 cut(s) 113, 204, 207, 654, 675, 783, 823, 898
Bme1390I CCNGG 2 cut(s) 648, 1180
Bme18I GGWCC 1 cut(s) 1195
BmeT110I CYCGRG 2 cut(s) 121, 155
BmgT120I GGNCC 4 cut(s) 188, 736, 978, 1195
BmiI GGNNCC 2 cut(s) 480, 738
BmrFI CCNGG 2 cut(s) 648, 1180
BmrI ACTGGG 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 57
BpiI GAAGAC 2 cut(s) 54, 384
Bpu1102I GCTNAGC 2 cut(s) 234, 754
Bpu14I TTCGAA 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 620
Bsa29I ATCGAT 1 cut(s) 1206
BsaJI CCNNGG 2 cut(s) 647, 1179
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 8 cut(s) 698, 728, 782, 812, 1010, 1040, 1148, 1178
Bsc4I CCNNNNNNNGG 3 cut(s) 459, 971, 987
Bse1I ACTGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 906
BseBI CCWGG 2 cut(s) 648, 1180
BseCI ATCGAT 1 cut(s) 1206
BseDI CCNNGG 2 cut(s) 647, 1179
BseGI GGATG 2 cut(s) 221, 1175
BseLI CCNNNNNNNGG 3 cut(s) 459, 971, 987
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 2 cut(s) 225, 768
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 2 cut(s) 803, 1153
BseXI GCAGC 5 cut(s) 192, 639, 660, 833, 883
Bsh1236I CGCG 2 cut(s) 816, 868
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 5 cut(s) 190, 220, 619, 737, 980
BshVI ATCGAT 1 cut(s) 1206
BsiEI CGRYCG 1 cut(s) 149
BsiHKCI CYCGRG 2 cut(s) 121, 155
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 2 cut(s) 323, 1004
BslI CCNNNNNNNGG 3 cut(s) 459, 971, 987
BsmAI GTCTC 3 cut(s) 111, 122, 152
BsmFI GGGAC 2 cut(s) 323, 1004
BsmI GAATGC 2 cut(s) 433, 878
BsnI GGCC 5 cut(s) 190, 220, 619, 737, 980
BsoBI CYCGRG 2 cut(s) 121, 155
Bsp119I TTCGAA 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 7 cut(s) 146, 222, 623, 628, 721, 1203, 1207
Bsp1720I GCTNAGC 2 cut(s) 234, 754
BspACI CCGC 7 cut(s) 111, 114, 203, 781, 868, 1159, 1167
BspANI GGCC 5 cut(s) 190, 220, 619, 737, 980
BspCNI CTCAG 2 cut(s) 226, 767
BspDI ATCGAT 1 cut(s) 1206
BspFNI CGCG 2 cut(s) 816, 868
BspHI TCATGA 1 cut(s) 606
BspLI GGNNCC 2 cut(s) 480, 738
BspT104I TTCGAA 1 cut(s) 425
BsrBI CCGCTC 2 cut(s) 111, 1161
BsrDI GCAATG 1 cut(s) 906
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 647, 1179
BssMI GATC 7 cut(s) 146, 222, 623, 628, 721, 1203, 1207
Bst2UI CCWGG 2 cut(s) 648, 1180
Bst4CI ACNGT 4 cut(s) 468, 775, 830, 1094
Bst6I CTCTTC 2 cut(s) 508, 966
BstBI TTCGAA 1 cut(s) 425
BstC8I GCNNGC 3 cut(s) 489, 617, 1238
BstDEI CTNAG 3 cut(s) 234, 754, 833
BstEII GGTNACC 1 cut(s) 801
BstF5I GGATG 2 cut(s) 221, 1175
BstFNI CGCG 2 cut(s) 816, 868
BstKTI GATC 7 cut(s) 149, 225, 626, 631, 724, 1206, 1210
BstMAI GTCTC 3 cut(s) 111, 122, 152
BstMBI GATC 7 cut(s) 146, 222, 623, 628, 721, 1203, 1207
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 8 cut(s) 141, 150, 658, 743, 865, 902, 1233, 1246
BstNI CCWGG 2 cut(s) 648, 1180
BstNSI RCATGY 2 cut(s) 385, 1073
BstPI GGTNACC 1 cut(s) 801
BstSCI CCNGG 2 cut(s) 646, 1178
BstUI CGCG 2 cut(s) 816, 868
BstV1I GCAGC 5 cut(s) 192, 639, 660, 833, 883
BstV2I GAAGAC 2 cut(s) 54, 384
BstX2I RGATCY 1 cut(s) 628
BstYI RGATCY 1 cut(s) 628
Bsu15I ATCGAT 1 cut(s) 1206
BsuRI GGCC 5 cut(s) 190, 220, 619, 737, 980
BsuTUI ATCGAT 1 cut(s) 1206
BtgZI GCGATG 1 cut(s) 428
BtsCI GGATG 2 cut(s) 221, 1175
Cac8I GCNNGC 3 cut(s) 489, 617, 1238
CciI TCATGA 1 cut(s) 606
Cfr13I GGNCC 4 cut(s) 188, 736, 978, 1195
ClaI ATCGAT 1 cut(s) 1206
CseI GACGC 2 cut(s) 526, 1092
Csp6I GTAC 3 cut(s) 138, 809, 949
CspCI CAANNNNNGTGG 2 cut(s) 61, 96
CviAII CATG 3 cut(s) 382, 607, 1070
CviQI GTAC 3 cut(s) 138, 809, 949
DdeI CTNAG 3 cut(s) 234, 754, 833
DpnI GATC 7 cut(s) 148, 224, 625, 630, 723, 1205, 1209
DpnII GATC 7 cut(s) 146, 222, 623, 628, 721, 1203, 1207
EaeI YGGCCR 1 cut(s) 218
Eam1104I CTCTTC 2 cut(s) 508, 966
EarI CTCTTC 2 cut(s) 508, 966
EciI GGCGGA 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 1195
Eco57I CTGAAG 2 cut(s) 48, 762
Eco88I CYCGRG 2 cut(s) 121, 155
Eco91I GGTNACC 1 cut(s) 801
EcoO109I RGGNCCY 3 cut(s) 188, 978, 1195
EcoO65I GGTNACC 1 cut(s) 801
EcoRII CCWGG 2 cut(s) 646, 1178
EcoT38I GRGCYC 1 cut(s) 155
FaeI CATG 3 cut(s) 385, 610, 1073
FaqI GGGAC 2 cut(s) 323, 1004
FatI CATG 3 cut(s) 381, 606, 1069
FauI CCCGC 1 cut(s) 861
FbaI TGATCA 1 cut(s) 721
FblI GTMKAC 1 cut(s) 1123
Fnu4HI GCNGC 8 cut(s) 112, 203, 206, 653, 674, 782, 822, 897
FokI GGATG 2 cut(s) 228, 1162
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 8 cut(s) 112, 203, 206, 653, 674, 782, 822, 897
FspBI CTAG 3 cut(s) 662, 1079, 1199
GluI GCNGC 8 cut(s) 112, 203, 206, 653, 674, 782, 822, 897
HaeIII GGCC 5 cut(s) 190, 220, 619, 737, 980
HapII CCGG 1 cut(s) 165
HgaI GACGC 2 cut(s) 526, 1092
Hin1II CATG 3 cut(s) 385, 610, 1073
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 7 cut(s) 5, 92, 104, 119, 524, 640, 944
HpaII CCGG 1 cut(s) 165
HphI GGTGA 5 cut(s) 91, 179, 278, 532, 688
Hpy166II GTNNAC 1 cut(s) 1124
Hpy188I TCNGA 2 cut(s) 628, 1018
Hpy188III TCNNGA 7 cut(s) 123, 226, 584, 607, 846, 941, 1079
Hpy8I GTNNAC 1 cut(s) 1124
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 201, 576, 969
HpyCH4III ACNGT 4 cut(s) 468, 775, 830, 1094
HpyCH4IV ACGT 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 8 cut(s) 141, 150, 658, 743, 865, 902, 1233, 1246
HpyF3I CTNAG 3 cut(s) 234, 754, 833
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 3 cut(s) 385, 610, 1073
Ksp22I TGATCA 1 cut(s) 721
Kzo9I GATC 7 cut(s) 146, 222, 623, 628, 721, 1203, 1207
LmnI GCTCC 1 cut(s) 1166
Lsp1109I GCAGC 5 cut(s) 192, 639, 660, 833, 883
MaeI CTAG 3 cut(s) 662, 1079, 1199
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 3 cut(s) 93, 538, 801
MalI GATC 7 cut(s) 148, 224, 625, 630, 723, 1205, 1209
MbiI CCGCTC 2 cut(s) 111, 1161
MboI GATC 7 cut(s) 146, 222, 623, 628, 721, 1203, 1207
MboII GAAGA 8 cut(s) 49, 54, 186, 189, 389, 525, 635, 953
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 7 cut(s) 301, 324, 362, 557, 996, 1022, 1231
MlyI GAGTC 4 cut(s) 14, 101, 113, 953
MnlI CCTC 8 cut(s) 77, 163, 595, 769, 781, 822, 1174, 1267
MroXI GAANNNNTTC 1 cut(s) 960
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 2 cut(s) 413, 701
MspA1I CMGCKG 3 cut(s) 205, 781, 824
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 2 cut(s) 648, 1180
Mva1269I GAATGC 2 cut(s) 433, 878
MvaI CCWGG 2 cut(s) 648, 1180
MvnI CGCG 2 cut(s) 816, 868
MwoI GCNNNNNNNGC 8 cut(s) 141, 150, 658, 743, 865, 902, 1233, 1246
NdeII GATC 7 cut(s) 146, 222, 623, 628, 721, 1203, 1207
NlaIII CATG 3 cut(s) 385, 610, 1073
NlaIV GGNNCC 2 cut(s) 480, 738
NmuCI GTSAC 2 cut(s) 93, 538
NspI RCATGY 2 cut(s) 385, 1073
NspV TTCGAA 1 cut(s) 425
PaeR7I CTCGAG 1 cut(s) 121
PagI TCATGA 1 cut(s) 606
PciI ACATGT 2 cut(s) 381, 1069
PcsI WCGNNNNNNNCGW 1 cut(s) 206
PctI GAATGC 2 cut(s) 433, 878
PdmI GAANNNNTTC 1 cut(s) 960
PfeI GAWTC 3 cut(s) 104, 524, 640
PkrI GCNGC 8 cut(s) 113, 204, 207, 654, 675, 783, 823, 898
Ple19I CGATCG 1 cut(s) 149
PleI GAGTC 4 cut(s) 13, 100, 113, 952
PpsI GAGTC 4 cut(s) 13, 100, 113, 952
PpuMI RGGWCCY 1 cut(s) 1195
PscI ACATGT 2 cut(s) 381, 1069
Psp5II RGGWCCY 1 cut(s) 1195
Psp6I CCWGG 2 cut(s) 646, 1178
PspEI GGTNACC 1 cut(s) 801
PspGI CCWGG 2 cut(s) 646, 1178
PspN4I GGNNCC 2 cut(s) 480, 738
PspPI GGNCC 4 cut(s) 188, 736, 978, 1195
PspPPI RGGWCCY 1 cut(s) 1195
PsuI RGATCY 1 cut(s) 628
PvuI CGATCG 1 cut(s) 149
PvuII CAGCTG 1 cut(s) 824
RsaI GTAC 3 cut(s) 139, 810, 950
RsaNI GTAC 3 cut(s) 138, 809, 949
RseI CAYNNNNRTG 2 cut(s) 413, 701
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 8 cut(s) 112, 203, 206, 653, 674, 782, 822, 897
Sau3AI GATC 7 cut(s) 146, 222, 623, 628, 721, 1203, 1207
Sau96I GGNCC 4 cut(s) 188, 736, 978, 1195
SchI GAGTC 4 cut(s) 14, 101, 113, 953
ScrFI CCNGG 2 cut(s) 648, 1180
SduI GDGCHC 1 cut(s) 155
Sfr274I CTCGAG 1 cut(s) 121
SfuI TTCGAA 1 cut(s) 425
SinI GGWCC 1 cut(s) 1195
SlaI CTCGAG 1 cut(s) 121
SmiMI CAYNNNNRTG 2 cut(s) 413, 701
SmlI CTYRAG 2 cut(s) 121, 599
SmoI CTYRAG 2 cut(s) 121, 599
Sse9I AATT 7 cut(s) 301, 324, 362, 557, 996, 1022, 1231
SsiI CCGC 7 cut(s) 111, 114, 203, 781, 868, 1159, 1167
SspI AATATT 2 cut(s) 684, 1110
SspMI CTAG 3 cut(s) 662, 1079, 1199
StyD4I CCNGG 2 cut(s) 646, 1178
TaaI ACNGT 4 cut(s) 468, 775, 830, 1094
TaiI ACGT 1 cut(s) 78
TaqI TCGA 5 cut(s) 107, 122, 149, 425, 1206
TasI AATT 7 cut(s) 301, 324, 362, 557, 996, 1022, 1231
TauI GCSGC 3 cut(s) 114, 205, 784
TfiI GAWTC 3 cut(s) 104, 524, 640
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TseFI GTSAC 2 cut(s) 93, 538
TseI GCWGC 5 cut(s) 205, 652, 673, 821, 896
Tsp45I GTSAC 2 cut(s) 93, 538
TspDTI ATGAA 1 cut(s) 653
VpaK11BI GGWCC 1 cut(s) 1195
XapI RAATTY 1 cut(s) 1022
XbaI TCTAGA 1 cut(s) 1078
XceI RCATGY 2 cut(s) 385, 1073
XhoI CTCGAG 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 1123
XmnI GAANNNNTTC 1 cut(s) 960
XspI CTAG 3 cut(s) 662, 1079, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.