Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8451857.1

Orthogroup ID

OG0010811

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1715

Gene Structure 1715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8451857.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 934 bp

agatggatatgatgaaagagagattttcaaaattgttgcttggtgaagacatgtcagggtctggtaaaggggtttgcacagccatggctatttcaaatgccattaccaatctttgtgctaccatttttgggcaactgtggagattggaacccttgccttctgaaaagaaatcaatgtggaaacgagagatggaatggctaatttgcgttagtgatcatattgtggaattgataccctcttggcaaacatttcctgatggaaaaaagctagaggtcatgacttgcacgcccagatcagatatctttatgaatctcccagcactgcgcaagctagacaatatgcttcttgatataatagatagttttgccaatacggagttctggtatgttgatcaaggagttatagctccagaagccgatggctcagcctcttttcgcaaaacagtccagcggcaagaggagaagtggtggctacctgtaccacgtgtagcatctgatggtctcagtgaaagtgcaagaaagcagctgcatcacacaagggaatgcacaaatcagatactaaaagctgcaatggctatcaatagccttgctttagcagacatggaagttccagaatcgtacttggaaactcttcctaagaatgggagggcctgccttggggatataatctaccgatatattacatcagataaattctcgccagagtttctgcttgattgccttgacctgtccagtgaacatgttgctcttgagattgcaaaccgtgttgaagcctcaatatttgtttggcgtcgaagaggtcacggtcactcaaaatcccaaactattccaaaccgctccactacaaagtcatcatgggaaatggtcaaggacctagtgattgatgtggataagagagctttgctggcagaaagagctgaaagcctcctgctttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016324 GO:0017016 GO:0017048 GO:0019899 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0031267 GO:0032092 GO:0032501 GO:0032502 GO:0032879 GO:0032989 GO:0040007 GO:0040008 GO:0043393 GO:0043900 GO:0044093 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051020 GO:0051049 GO:0051098 GO:0051099 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0065008 GO:0065009 GO:0071840 GO:0071944 GO:0080092 GO:0098590 GO:0098772 GO:1904424 GO:1904426 GO:1904475 GO:1904477 GO:1905097 GO:1905099 GO:2000012 GO:2000241 GO:2001106 GO:2001108

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRONE

Protein Analysis

311

Amino Acids

35.3

Weight (kDa)

5.79

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05940 AT5G05940
fragaria_vesca	FvH4_7g23610 FvH4_7g23610
malus_domestica	MD01G1142000.v1.1 MD07G1207700.v1.1
prunus_persica	Prupe.2G243000_v2.0.a1
pyrus_communis	pycom01g16220 pycom07g19320
rosa_chinensis	RchiOBHm_Chr1g0368871
rosa_laevigata	RLG00000027181
rosa_multiflora	Rmu_co8451857.1_g000001 Rmu_sc0004250.1_g000050 Rmu_ssc0000142.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288250
rosa_rugosa	Rorug01G0345400
rosa_samantha	Rh1AG352500 Rh1BG316000 Rh1CG330700 Rh1DG347500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	325
AccBSI	CCGCTC	1 cut(s)	836
AciI	CCGC	2 cut(s)	450, 834
AcsI	RAATTY	1 cut(s)	691
AcvI	CACGTG	1 cut(s)	484
AcyI	GRCGYC	1 cut(s)	789
AfaI	GTAC	2 cut(s)	479, 619
AfiI	CCNNNNNNNGG	3 cut(s)	128, 640, 656
AflIII	ACRYGT	3 cut(s)	50, 483, 738
AgsI	TTSAA	3 cut(s)	29, 95, 769
AjuI	GAANNNNNNNTTGG	2 cut(s)	361, 393
AluBI	AGCT	7 cut(s)	267, 330, 406, 525, 565, 898, 916
AluI	AGCT	7 cut(s)	267, 330, 406, 525, 565, 898, 916
Alw26I	GTCTC	1 cut(s)	505
AlwNI	CAGNNNCTG	1 cut(s)	61
AoxI	GGCC	1 cut(s)	647
ApeKI	GCWGC	3 cut(s)	522, 525, 565
ApoI	RAATTY	1 cut(s)	691
Asp700I	GAANNNNTTC	1 cut(s)	629
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	2 cut(s)	647, 870
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	870
BbrPI	CACGTG	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	512, 534, 552
BccI	CCATC	4 cut(s)	183, 250, 412, 490
BclI	TGATCA	2 cut(s)	213, 390
BcoDI	GTCTC	1 cut(s)	505
BfaI	CTAG	3 cut(s)	268, 331, 874
BisI	GCNGC	4 cut(s)	451, 523, 526, 566
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	4 cut(s)	452, 524, 527, 567
Bme18I	GGWCC	1 cut(s)	870
BmgT120I	GGNCC	2 cut(s)	647, 870
BmiI	GGNNCC	1 cut(s)	149
BmsI	GCATC	2 cut(s)	499, 537
BpiI	GAAGAC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	392
Bpu1102I	GCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	769
BsaAI	YACGTR	1 cut(s)	484
BsaHI	GRCGYC	1 cut(s)	789
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	2 cut(s)	83, 654
BsaXI	ACNNNNNCTCC	4 cut(s)	367, 397, 451, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 640, 656
Bse1I	ACTGG	1 cut(s)	731
Bse3DI	GCAATG	1 cut(s)	575
BseDI	CCNNGG	2 cut(s)	83, 654
BseLI	CCNNNNNNNGG	3 cut(s)	128, 640, 656
BseMI	GCAATG	1 cut(s)	575
BseMII	CTCAG	2 cut(s)	437, 516
BseNI	ACTGG	1 cut(s)	731
BseRI	GAGGAG	1 cut(s)	472
BseXI	GCAGC	3 cut(s)	512, 534, 552
BseYI	CCCAGC	1 cut(s)	315
BshFI	GGCC	1 cut(s)	649
BslI	CCNNNNNNNGG	3 cut(s)	128, 640, 656
BsmAI	GTCTC	1 cut(s)	505
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	649
Bso31I	GGTCTC	1 cut(s)	505
Bsp143I	GATC	3 cut(s)	213, 292, 390
Bsp1720I	GCTNAGC	1 cut(s)	423
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	2 cut(s)	450, 834
BspANI	GGCC	1 cut(s)	649
BspCNI	CTCAG	2 cut(s)	436, 515
BspHI	TCATGA	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	505
BsrBI	CCGCTC	1 cut(s)	836
BsrDI	GCAATG	1 cut(s)	575
BsrI	ACTGG	1 cut(s)	731
BssECI	CCNNGG	2 cut(s)	83, 654
BssMI	GATC	3 cut(s)	213, 292, 390
BssNI	GRCGYC	1 cut(s)	789
BssT1I	CCWWGG	2 cut(s)	83, 654
Bst4CI	ACNGT	4 cut(s)	137, 444, 763, 805
Bst6I	CTCTTC	2 cut(s)	635, 789
BstACI	GRCGYC	1 cut(s)	789
BstBAI	YACGTR	1 cut(s)	484
BstC8I	GCNNGC	4 cut(s)	286, 328, 651, 905
BstDEI	CTNAG	3 cut(s)	423, 502, 635
BstDSI	CCRYGG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	3 cut(s)	216, 295, 393
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	3 cut(s)	213, 292, 390
BstMWI	GCNNNNNNNGC	4 cut(s)	412, 571, 904, 913
BstNSI	RCATGY	2 cut(s)	54, 742
BstV1I	GCAGC	3 cut(s)	512, 534, 552
BstV2I	GAAGAC	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	649
BtgI	CCRYGG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	3 cut(s)	319, 510, 738
Cac8I	GCNNGC	4 cut(s)	286, 328, 651, 905
CaiI	CAGNNNCTG	1 cut(s)	61
CciI	TCATGA	1 cut(s)	275
CfoI	GCGC	1 cut(s)	326
Cfr13I	GGNCC	2 cut(s)	647, 870
CseI	GACGC	1 cut(s)	778
Csp6I	GTAC	2 cut(s)	478, 618
CviAII	CATG	6 cut(s)	51, 84, 276, 600, 739, 854
CviQI	GTAC	2 cut(s)	478, 618
DdeI	CTNAG	3 cut(s)	423, 502, 635
DpnI	GATC	3 cut(s)	215, 294, 392
DpnII	GATC	3 cut(s)	213, 292, 390
Eam1104I	CTCTTC	2 cut(s)	635, 789
EarI	CTCTTC	2 cut(s)	635, 789
Eco130I	CCWWGG	2 cut(s)	83, 654
Eco31I	GGTCTC	1 cut(s)	505
Eco32I	GATATC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	870
Eco72I	CACGTG	1 cut(s)	484
EcoO109I	RGGNCCY	2 cut(s)	647, 870
EcoRV	GATATC	1 cut(s)	300
EcoT14I	CCWWGG	2 cut(s)	83, 654
ErhI	CCWWGG	2 cut(s)	83, 654
FaeI	CATG	6 cut(s)	54, 87, 279, 603, 742, 857
FatI	CATG	6 cut(s)	50, 83, 275, 599, 738, 853
FbaI	TGATCA	2 cut(s)	213, 390
Fnu4HI	GCNGC	4 cut(s)	451, 523, 526, 566
Fsp4HI	GCNGC	4 cut(s)	451, 523, 526, 566
FspBI	CTAG	3 cut(s)	268, 331, 874
FspI	TGCGCA	1 cut(s)	325
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	4 cut(s)	451, 523, 526, 566
GsaI	CCCAGC	1 cut(s)	319
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	649
HgaI	GACGC	1 cut(s)	778
HhaI	GCGC	1 cut(s)	326
Hin1I	GRCGYC	1 cut(s)	789
Hin1II	CATG	6 cut(s)	54, 87, 279, 603, 742, 857
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HinfI	GANTC	2 cut(s)	309, 613
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	736
Hpy188I	TCNGA	5 cut(s)	162, 297, 495, 554, 687
Hpy188III	TCNNGA	6 cut(s)	253, 276, 346, 409, 610, 748
Hpy8I	GTNNAC	1 cut(s)	736
Hpy99I	CGWCG	1 cut(s)	794
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	4 cut(s)	137, 444, 763, 805
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	7 cut(s)	77, 284, 514, 528, 545, 568, 757
HpyF10VI	GCNNNNNNNGC	4 cut(s)	412, 571, 904, 913
HpyF3I	CTNAG	3 cut(s)	423, 502, 635
HpySE526I	ACGT	1 cut(s)	483
Hsp92I	GRCGYC	1 cut(s)	789
Hsp92II	CATG	6 cut(s)	54, 87, 279, 603, 742, 857
HspAI	GCGC	1 cut(s)	324
Ksp22I	TGATCA	2 cut(s)	213, 390
Kzo9I	GATC	3 cut(s)	213, 292, 390
LmnI	GCTCC	2 cut(s)	411, 841
Lsp1109I	GCAGC	3 cut(s)	512, 534, 552
LweI	GCATC	2 cut(s)	499, 537
MaeI	CTAG	3 cut(s)	268, 331, 874
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	2 cut(s)	799, 805
MalI	GATC	3 cut(s)	215, 294, 392
MbiI	CCGCTC	1 cut(s)	836
MboI	GATC	3 cut(s)	213, 292, 390
MboII	GAAGA	3 cut(s)	58, 622, 806
MluCI	AATT	4 cut(s)	31, 200, 226, 691
MnlI	CCTC	8 cut(s)	246, 264, 438, 450, 638, 783, 790, 934
MroXI	GAANNNNTTC	1 cut(s)	629
MslI	CAYNNNNRTG	1 cut(s)	82
MspA1I	CMGCKG	2 cut(s)	450, 525
Mva1269I	GAATGC	1 cut(s)	547
MwoI	GCNNNNNNNGC	4 cut(s)	412, 571, 904, 913
NcoI	CCATGG	1 cut(s)	83
NdeII	GATC	3 cut(s)	213, 292, 390
NlaIII	CATG	6 cut(s)	54, 87, 279, 603, 742, 857
NlaIV	GGNNCC	1 cut(s)	149
NmuCI	GTSAC	2 cut(s)	799, 805
NsbI	TGCGCA	1 cut(s)	325
NspI	RCATGY	2 cut(s)	54, 742
PagI	TCATGA	1 cut(s)	275
PciI	ACATGT	2 cut(s)	50, 738
PctI	GAATGC	1 cut(s)	547
PdmI	GAANNNNTTC	1 cut(s)	629
PfeI	GAWTC	2 cut(s)	309, 613
PkrI	GCNGC	4 cut(s)	452, 524, 527, 567
PmaCI	CACGTG	1 cut(s)	484
PmlI	CACGTG	1 cut(s)	484
Ppu21I	YACGTR	1 cut(s)	484
PpuMI	RGGWCCY	1 cut(s)	870
PscI	ACATGT	2 cut(s)	50, 738
Psp5II	RGGWCCY	1 cut(s)	870
PspCI	CACGTG	1 cut(s)	484
PspFI	CCCAGC	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	149
PspPI	GGNCC	2 cut(s)	647, 870
PspPPI	RGGWCCY	1 cut(s)	870
PstNI	CAGNNNCTG	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	525
RsaI	GTAC	2 cut(s)	479, 619
RsaNI	GTAC	2 cut(s)	478, 618
RseI	CAYNNNNRTG	1 cut(s)	82
SatI	GCNGC	4 cut(s)	451, 523, 526, 566
Sau3AI	GATC	3 cut(s)	213, 292, 390
Sau96I	GGNCC	2 cut(s)	647, 870
SfaNI	GCATC	2 cut(s)	499, 537
SinI	GGWCC	1 cut(s)	870
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	748
SmoI	CTYRAG	1 cut(s)	748
Sse9I	AATT	4 cut(s)	31, 200, 226, 691
SsiI	CCGC	2 cut(s)	450, 834
SspI	AATATT	1 cut(s)	779
SspMI	CTAG	3 cut(s)	268, 331, 874
StyI	CCWWGG	2 cut(s)	83, 654
TaaI	ACNGT	4 cut(s)	137, 444, 763, 805
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	1 cut(s)	792
TasI	AATT	4 cut(s)	31, 200, 226, 691
TauI	GCSGC	1 cut(s)	453
TfiI	GAWTC	2 cut(s)	309, 613
TscAI	CASTG	3 cut(s)	326, 510, 738
TseFI	GTSAC	2 cut(s)	799, 805
TseI	GCWGC	3 cut(s)	522, 525, 565
Tsp45I	GTSAC	2 cut(s)	799, 805
TspDTI	ATGAA	2 cut(s)	28, 322
TspGWI	ACGGA	1 cut(s)	388
TspRI	CASTG	3 cut(s)	326, 510, 738
VpaK11BI	GGWCC	1 cut(s)	870
XapI	RAATTY	1 cut(s)	691
XceI	RCATGY	2 cut(s)	54, 742
XmnI	GAANNNNTTC	1 cut(s)	629
XspI	CTAG	3 cut(s)	268, 331, 874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.