Rh1AG352500

Rop guanine nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
58831476 .. 58835192
3717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG352500.1

Sequence Viewer

Length: 1329 bp
ATGGAAGCTTTGTCGAAGAAAAGGGAGAGTTGTGAGAAAAAGAGAAGTAGTGGGTTCAAGTCTTCAGCTGGGACCGAGTCACTGACCGATTCCAGTGCCGAGTCGAGAGAGAGCAGCTCGAGTAGATCGAGCTCAGAGACTTCAAGTGAGGAAGGGAAGAGAAAAGGGCTCAACTCGCCGGCTCTGTTGGGCTGGCCTATAAGGAAAGCTGAATTGTGCAAAAGCTCAACTGCTTTAGCTGATTTGGATGAAGCTGAGGAGAAGGAACATGTTGATGATTCAAAGTATAAGGATTTGGCTGCCAAAATTGCAGAGATGGATATGATGAAAGAGAGATTTTCAAAATTGTTGCTTGGTGAAGACATGTCAGGGTCTGGTAAAGGGGTTTGCACAGCCATGGCTATTTCAAATGCCATTACCAATCTTTGTGCTACCATTTTTGGGCAACTGTGGAGATTGGAACCCTTGCCTTCTGAAAAGAAATCGATGTGGAAACGAGAGATGGAATGGCTAATTTGCGTTAGTGATCATATTGTGGAATTGATACCCTCTTGGCAAACATTTCCTGATGGAAAAAAGCTAGAGGTCATGACTTGCACGCCCAGATCAGATATCTTTATGAATCTCCCAGCACTGCGCAAGCTAGACAATATGCTTCTTGATATACTAGATAGTTTCGCCAATACGGAGTTCTGGTATGTTGATCAAGGAGTTATAGCTCCAGAAGCCGATGGCTCAGCCTCTTTTCGCAAAACAGTCCAGCGGCAAGAGGAGAAGTGGTGGCTACCTGTACCACGTGTAGCATCTGATGGTCTCAGTGAAAGTGCAAGAAAGCAGCTGCATCACACAAGGGAATGCACAAATCAGATACTAAAAGCTGCAATGGCTATCAATAGCCTTGCTTTAGCAGACATGGAAGTTCCAGAATCGTACTTGGAAACTCTTCCTAAGAATGGGAGGGCCTGCCTTGGGGATATAATCTACCGATATATTACATCAGATAAATTCTCGCCAGAGTTTCTGCTTGATTGCCTTGACCTGTCCAGTGAACATGTTGCTCTTGAGATTGCAAACCGTGTTGAAGCCTCAATATTTGTTTGGCGTCGAAGAGGTCACGGTCACTCAAAATCCCAAACTATTCCAAACCGCTCCACTACAAAGTCATCATGGGAAATGGTCAAGGACCTAGTGATTGATGTGGATAAGAGAGCTTTGCTGGCAGAAAGAGCTGAAAGCCTCCTGCTTTCATTGAAGCAGCGTTTCCCTTGTCTTACACAAACTATCTTGGACACCAGCAAGATTCAATACAACAAGGTTAGAGAACTTTGA

Protein Analysis

442

Amino Acids

49.75

Weight (kDa)

6.1

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRONE PF03759 105 - 438 9.4e-161 PRONE (Plant-specific Rop nucleotide exchanger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 638
AccBSI CCGCTC 1 cut(s) 1149
AciI CCGC 2 cut(s) 763, 1147
AcsI RAATTY 1 cut(s) 1004
AcuI CTGAAG 1 cut(s) 48
AcvI CACGTG 1 cut(s) 797
AcyI GRCGYC 1 cut(s) 1102
AfaI GTAC 2 cut(s) 792, 932
AfiI CCNNNNNNNGG 3 cut(s) 441, 953, 969
AflIII ACRYGT 4 cut(s) 268, 363, 796, 1051
AgsI TTSAA 8 cut(s) 58, 144, 282, 342, 408, 1082, 1252, 1304
AjuI GAANNNNNNNTTGG 2 cut(s) 674, 706
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 2 cut(s) 131, 818
AlwNI CAGNNNCTG 1 cut(s) 374
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 2 cut(s) 194, 960
ApeKI GCWGC 6 cut(s) 114, 299, 835, 838, 878, 1255
ApoI RAATTY 1 cut(s) 1004
Asp700I GAANNNNTTC 1 cut(s) 942
AspLEI GCGC 1 cut(s) 639
AspS9I GGNCC 3 cut(s) 72, 960, 1183
AsuHPI GGTGA 1 cut(s) 368
AvaI CYCGRG 1 cut(s) 118
AvaII GGWCC 2 cut(s) 72, 1183
BanII GRGCYC 2 cut(s) 134, 171
BbrPI CACGTG 1 cut(s) 797
BbsI GAAGAC 2 cut(s) 54, 366
Bbv12I GWGCWC 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 6 cut(s) 126, 286, 825, 847, 865, 1267
BccI CCATC 5 cut(s) 310, 496, 563, 725, 803
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BclI TGATCA 2 cut(s) 526, 703
BcoDI GTCTC 2 cut(s) 131, 818
BfaI CTAG 4 cut(s) 581, 644, 668, 1187
BisI GCNGC 7 cut(s) 115, 300, 764, 836, 839, 879, 1256
BlpI GCTNAGC 1 cut(s) 736
BlsI GCNGC 7 cut(s) 116, 301, 765, 837, 840, 880, 1257
Bme18I GGWCC 2 cut(s) 72, 1183
BmeT110I CYCGRG 1 cut(s) 118
BmgT120I GGNCC 3 cut(s) 72, 960, 1183
BmiI GGNNCC 2 cut(s) 73, 462
BmsI GCATC 2 cut(s) 812, 850
BpiI GAAGAC 2 cut(s) 54, 366
BplI GAGNNNNNCTC 2 cut(s) 101, 133
BpmI CTGGAG 1 cut(s) 705
Bpu10I CCTNAGC 1 cut(s) 255
Bpu1102I GCTNAGC 1 cut(s) 736
BpuEI CTTGAG 1 cut(s) 1082
Bsa29I ATCGAT 1 cut(s) 485
BsaAI YACGTR 1 cut(s) 797
BsaHI GRCGYC 1 cut(s) 1102
BsaI GGTCTC 1 cut(s) 818
BsaJI CCNNGG 2 cut(s) 396, 967
BsaXI ACNNNNNCTCC 4 cut(s) 680, 710, 764, 794
Bsc4I CCNNNNNNNGG 3 cut(s) 441, 953, 969
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 2 cut(s) 93, 1044
Bse3DI GCAATG 1 cut(s) 888
BseCI ATCGAT 1 cut(s) 485
BseDI CCNNGG 2 cut(s) 396, 967
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 3 cut(s) 441, 953, 969
BseMI GCAATG 1 cut(s) 888
BseMII CTCAG 4 cut(s) 147, 246, 750, 829
BseNI ACTGG 2 cut(s) 93, 1044
BseRI GAGGAG 2 cut(s) 272, 785
BseXI GCAGC 6 cut(s) 126, 286, 825, 847, 865, 1267
BseYI CCCAGC 2 cut(s) 68, 628
BshFI GGCC 2 cut(s) 196, 962
BshVI ATCGAT 1 cut(s) 485
BsiHKAI GWGCWC 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 3 cut(s) 441, 953, 969
BsmAI GTCTC 2 cut(s) 131, 818
BsmFI GGGAC 1 cut(s) 85
BsmI GAATGC 1 cut(s) 860
BsnI GGCC 2 cut(s) 196, 962
Bso31I GGTCTC 1 cut(s) 818
BsoBI CYCGRG 1 cut(s) 118
Bsp1286I GDGCHC 2 cut(s) 134, 171
Bsp143I GATC 4 cut(s) 125, 526, 605, 703
Bsp1720I GCTNAGC 1 cut(s) 736
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 2 cut(s) 763, 1147
BspANI GGCC 2 cut(s) 196, 962
BspCNI CTCAG 4 cut(s) 146, 247, 749, 828
BspDI ATCGAT 1 cut(s) 485
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 2 cut(s) 73, 462
BspTNI GGTCTC 1 cut(s) 818
BsrBI CCGCTC 1 cut(s) 1149
BsrDI GCAATG 1 cut(s) 888
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 2 cut(s) 93, 1044
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 396, 967
BssMI GATC 4 cut(s) 125, 526, 605, 703
BssNI GRCGYC 1 cut(s) 1102
BssT1I CCWWGG 2 cut(s) 396, 967
Bst4CI ACNGT 4 cut(s) 450, 757, 1076, 1118
Bst6I CTCTTC 3 cut(s) 152, 948, 1102
BstACI GRCGYC 1 cut(s) 1102
BstBAI YACGTR 1 cut(s) 797
BstC8I GCNNGC 6 cut(s) 180, 194, 599, 641, 964, 1218
BstDEI CTNAG 5 cut(s) 133, 255, 736, 815, 948
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 253
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 4 cut(s) 128, 529, 608, 706
BstMAI GTCTC 2 cut(s) 131, 818
BstMBI GATC 4 cut(s) 125, 526, 605, 703
BstMWI GCNNNNNNNGC 6 cut(s) 175, 308, 725, 884, 1217, 1226
BstNSI RCATGY 3 cut(s) 272, 367, 1055
BstV1I GCAGC 6 cut(s) 126, 286, 825, 847, 865, 1267
BstV2I GAAGAC 2 cut(s) 54, 366
Bsu15I ATCGAT 1 cut(s) 485
BsuRI GGCC 2 cut(s) 196, 962
BsuTUI ATCGAT 1 cut(s) 485
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 632
BtsIMutI CAGTG 5 cut(s) 80, 100, 632, 823, 1051
Cac8I GCNNGC 6 cut(s) 180, 194, 599, 641, 964, 1218
CaiI CAGNNNCTG 1 cut(s) 374
CciI TCATGA 1 cut(s) 588
CfoI GCGC 1 cut(s) 639
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 3 cut(s) 72, 960, 1183
ClaI ATCGAT 1 cut(s) 485
CseI GACGC 1 cut(s) 1091
Csp6I GTAC 2 cut(s) 791, 931
CviAII CATG 7 cut(s) 269, 364, 397, 589, 913, 1052, 1167
CviQI GTAC 2 cut(s) 791, 931
DdeI CTNAG 5 cut(s) 133, 255, 736, 815, 948
DpnI GATC 4 cut(s) 127, 528, 607, 705
DpnII GATC 4 cut(s) 125, 526, 605, 703
Eam1104I CTCTTC 3 cut(s) 152, 948, 1102
EarI CTCTTC 3 cut(s) 152, 948, 1102
Ecl136II GAGCTC 1 cut(s) 132
Eco130I CCWWGG 2 cut(s) 396, 967
Eco24I GRGCYC 2 cut(s) 134, 171
Eco31I GGTCTC 1 cut(s) 818
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 2 cut(s) 72, 1183
Eco53kI GAGCTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 48
Eco72I CACGTG 1 cut(s) 797
Eco88I CYCGRG 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 132
EcoO109I RGGNCCY 2 cut(s) 960, 1183
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 2 cut(s) 396, 967
EcoT38I GRGCYC 2 cut(s) 134, 171
ErhI CCWWGG 2 cut(s) 396, 967
FaeI CATG 7 cut(s) 272, 367, 400, 592, 916, 1055, 1170
FaqI GGGAC 1 cut(s) 85
FatI CATG 7 cut(s) 268, 363, 396, 588, 912, 1051, 1166
FbaI TGATCA 2 cut(s) 526, 703
Fnu4HI GCNGC 7 cut(s) 115, 300, 764, 836, 839, 879, 1256
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 2 cut(s) 134, 171
Fsp4HI GCNGC 7 cut(s) 115, 300, 764, 836, 839, 879, 1256
FspBI CTAG 4 cut(s) 581, 644, 668, 1187
FspI TGCGCA 1 cut(s) 638
GlaI GCGC 1 cut(s) 638
GluI GCNGC 7 cut(s) 115, 300, 764, 836, 839, 879, 1256
GsaI CCCAGC 2 cut(s) 72, 632
GsuI CTGGAG 1 cut(s) 705
HaeIII GGCC 2 cut(s) 196, 962
HapII CCGG 1 cut(s) 179
HgaI GACGC 1 cut(s) 1091
HhaI GCGC 1 cut(s) 639
Hin1I GRCGYC 1 cut(s) 1102
Hin1II CATG 7 cut(s) 272, 367, 400, 592, 916, 1055, 1170
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 7 cut(s) 77, 89, 101, 278, 622, 926, 1300
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 1 cut(s) 1049
Hpy188I TCNGA 6 cut(s) 136, 475, 610, 808, 867, 1000
Hpy188III TCNNGA 7 cut(s) 105, 566, 589, 659, 722, 923, 1061
Hpy8I GTNNAC 1 cut(s) 1049
Hpy99I CGWCG 1 cut(s) 1107
HpyAV CCTTC 3 cut(s) 146, 256, 480
HpyCH4III ACNGT 4 cut(s) 450, 757, 1076, 1118
HpyCH4IV ACGT 1 cut(s) 796
HpyCH4V TGCA 9 cut(s) 219, 311, 390, 597, 827, 841, 858, 881, 1070
HpyF10VI GCNNNNNNNGC 6 cut(s) 175, 308, 725, 884, 1217, 1226
HpyF3I CTNAG 5 cut(s) 133, 255, 736, 815, 948
HpySE526I ACGT 1 cut(s) 796
Hsp92I GRCGYC 1 cut(s) 1102
Hsp92II CATG 7 cut(s) 272, 367, 400, 592, 916, 1055, 1170
HspAI GCGC 1 cut(s) 637
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
Ksp22I TGATCA 2 cut(s) 526, 703
Kzo9I GATC 4 cut(s) 125, 526, 605, 703
LmnI GCTCC 2 cut(s) 724, 1154
Lsp1109I GCAGC 6 cut(s) 126, 286, 825, 847, 865, 1267
LweI GCATC 2 cut(s) 812, 850
MaeI CTAG 4 cut(s) 581, 644, 668, 1187
MaeII ACGT 1 cut(s) 796
MaeIII GTNAC 3 cut(s) 78, 1112, 1118
MalI GATC 4 cut(s) 127, 528, 607, 705
MbiI CCGCTC 1 cut(s) 1149
MboI GATC 4 cut(s) 125, 526, 605, 703
MboII GAAGA 6 cut(s) 28, 54, 169, 371, 935, 1119
MhlI GDGCHC 2 cut(s) 134, 171
MluCI AATT 6 cut(s) 212, 306, 344, 513, 539, 1004
MlyI GAGTC 2 cut(s) 86, 110
MroNI GCCGGC 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 942
MslI CAYNNNNRTG 2 cut(s) 273, 395
MspA1I CMGCKG 3 cut(s) 68, 763, 838
MspI CCGG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 860
MwoI GCNNNNNNNGC 6 cut(s) 175, 308, 725, 884, 1217, 1226
NaeI GCCGGC 1 cut(s) 180
NcoI CCATGG 1 cut(s) 396
NdeII GATC 4 cut(s) 125, 526, 605, 703
NgoMIV GCCGGC 1 cut(s) 178
NlaIII CATG 7 cut(s) 272, 367, 400, 592, 916, 1055, 1170
NlaIV GGNNCC 2 cut(s) 73, 462
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 3 cut(s) 78, 1112, 1118
NsbI TGCGCA 1 cut(s) 638
NspI RCATGY 3 cut(s) 272, 367, 1055
PaeR7I CTCGAG 1 cut(s) 118
PagI TCATGA 1 cut(s) 588
PciI ACATGT 3 cut(s) 268, 363, 1051
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PctI GAATGC 1 cut(s) 860
PdiI GCCGGC 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 942
PfeI GAWTC 5 cut(s) 89, 278, 622, 926, 1300
PflFI GACNNNGTC 1 cut(s) 76
PkrI GCNGC 7 cut(s) 116, 301, 765, 837, 840, 880, 1257
PleI GAGTC 2 cut(s) 85, 109
PmaCI CACGTG 1 cut(s) 797
PmlI CACGTG 1 cut(s) 797
PpsI GAGTC 2 cut(s) 85, 109
Ppu21I YACGTR 1 cut(s) 797
PpuMI RGGWCCY 1 cut(s) 1183
PscI ACATGT 3 cut(s) 268, 363, 1051
Psp124BI GAGCTC 1 cut(s) 134
Psp5II RGGWCCY 1 cut(s) 1183
PspCI CACGTG 1 cut(s) 797
PspFI CCCAGC 2 cut(s) 68, 628
PspN4I GGNNCC 2 cut(s) 73, 462
PspPI GGNCC 3 cut(s) 72, 960, 1183
PspPPI RGGWCCY 1 cut(s) 1183
PspXI VCTCGAGB 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 374
PsyI GACNNNGTC 1 cut(s) 76
PvuII CAGCTG 2 cut(s) 68, 838
RsaI GTAC 2 cut(s) 792, 932
RsaNI GTAC 2 cut(s) 791, 931
RseI CAYNNNNRTG 2 cut(s) 273, 395
SacI GAGCTC 1 cut(s) 134
SatI GCNGC 7 cut(s) 115, 300, 764, 836, 839, 879, 1256
Sau3AI GATC 4 cut(s) 125, 526, 605, 703
Sau96I GGNCC 3 cut(s) 72, 960, 1183
SchI GAGTC 2 cut(s) 86, 110
SduI GDGCHC 2 cut(s) 134, 171
SfaNI GCATC 2 cut(s) 812, 850
Sfr274I CTCGAG 1 cut(s) 118
SinI GGWCC 2 cut(s) 72, 1183
SlaI CTCGAG 1 cut(s) 118
SmiMI CAYNNNNRTG 2 cut(s) 273, 395
SmlI CTYRAG 2 cut(s) 118, 1061
SmoI CTYRAG 2 cut(s) 118, 1061
Sse9I AATT 6 cut(s) 212, 306, 344, 513, 539, 1004
SsiI CCGC 2 cut(s) 763, 1147
SspI AATATT 1 cut(s) 1092
SspMI CTAG 4 cut(s) 581, 644, 668, 1187
SstI GAGCTC 1 cut(s) 134
StyI CCWWGG 2 cut(s) 396, 967
TaaI ACNGT 4 cut(s) 450, 757, 1076, 1118
TaiI ACGT 1 cut(s) 799
TaqI TCGA 6 cut(s) 14, 104, 119, 128, 485, 1105
TaqII GACCGA 2 cut(s) 89, 101
TasI AATT 6 cut(s) 212, 306, 344, 513, 539, 1004
TauI GCSGC 1 cut(s) 766
TfiI GAWTC 5 cut(s) 89, 278, 622, 926, 1300
TscAI CASTG 5 cut(s) 87, 100, 639, 823, 1051
TseFI GTSAC 3 cut(s) 78, 1112, 1118
TseI GCWGC 6 cut(s) 114, 299, 835, 838, 878, 1255
Tsp45I GTSAC 3 cut(s) 78, 1112, 1118
TspDTI ATGAA 4 cut(s) 264, 341, 635, 1236
TspGWI ACGGA 1 cut(s) 701
TspRI CASTG 5 cut(s) 87, 100, 639, 823, 1051
Tth111I GACNNNGTC 1 cut(s) 76
VpaK11BI GGWCC 2 cut(s) 72, 1183
XapI RAATTY 1 cut(s) 1004
XceI RCATGY 3 cut(s) 272, 367, 1055
XhoI CTCGAG 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 942
XspI CTAG 4 cut(s) 581, 644, 668, 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.