FvH4_7g25550

peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017366
Physical Location & Seq
Reverse (-)
19468396 .. 19469660
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25550.t1

Sequence Viewer

Length: 954 bp
ATGGTTTCTTACAAGTTACTCCTCCTTGGATTGGTCTTTGCTGGTGCAGTTCTTCAATCCATCAATGGCAAGCTATCTCCAACTTCCTACTTACCTAGATGCCCAAATGCATTGTCTATCGTGCAAGACGAAGTTATCGCAGCCATTAAGAACGAAAGACGCATAGGGGCTTCGTTACTCCGCCTGCATTTCCATGATTGCTTTGTAAATGGTTGTGATGCTTCAGTACTGTTGGATGATACACCAGGCTTTATAGGTGAGAAAACAGCAGTTCCGAATAACAACTCGCTTGGAGGATTTGAAGTAGTTGATCGGATTAAAGCCAAGGTTGAGAAGGCATGCCCGGGAGTGGTATCTTGTGCTGATATTTTAGCTTTAGCTGCGCGCGACTCGGTAGTACATTTGGGAGGTCCTTCATGGCAAGTTTATTTGGGAAGAAGAGATTCAACCAGTGCTAGTAGGAGTGCTGCAAGCACCTCCATCCCTCCACCCGCATCAAATATAAGCAGTCTTCTTTCGAGCTTTGCTGCTCAAGGTCTGTCCTTGAGGGACTTGGTCGCACTTTCAGGATCACACACCATAGGCTTGGCAAGATGCACATCATTTCGAGCACGCATCTACAAGGACACCACTACTGATGCCGTCTTTGCCAAGTCATTACAGAGCAATTGCCCAGTAACTGGAAATGACAACAATCTTGCAAGCCTGGACCTCCAGACCCCAACATATTTTGACAATTTGTACTACAAGAACCTGCTGAAAGAAAAGGGCCTTCTTCATTCAGACCAGGAGCTCTTCAATGGCACACCAGCAGATGCTATGGTAAAGCTATACGCAAGCAACACTTTCGCATTTTTCTACGATTTTGCCAACTCCATGGTCAAAATGGGAAACATAAAACCTCTCACAGGAAGCCAGGGTGAAATCAGAATCAATTGCAGAAAAGTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

318

Amino Acids

34.06

Weight (kDa)

8.72

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 281 1.6e-86 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017366)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25550
malus_domestica MD01G1162100.v1.1 MD01G1162400.v1.1 MD07G1230500.v1.1
prunus_persica Prupe.2G260600_v2.0.a1
pyrus_communis pycom07g20800
rosa_chinensis RchiOBHm_Chr1g0371551
rosa_multiflora Rmu_sc0000948.1_g000034
rosa_roxburghii Rroxscaffold_4G00285560
rosa_rugosa Rorug01G0365300
rosa_samantha Rh1BG338700 Rh1DG369700
rosa_wichuraiana Rw1G033010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 762
AccB7I CCANNNNNTGG 1 cut(s) 680
AccII CGCG 2 cut(s) 385, 387
AciI CCGC 2 cut(s) 181, 492
AclWI GGATC 1 cut(s) 577
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 3 cut(s) 228, 399, 743
AfiI CCNNNNNNNGG 4 cut(s) 31, 349, 680, 908
AgsI TTSAA 4 cut(s) 56, 302, 447, 799
AjnI CCWGG 4 cut(s) 244, 705, 786, 915
AluBI AGCT 6 cut(s) 73, 374, 380, 522, 793, 829
AluI AGCT 6 cut(s) 73, 374, 380, 522, 793, 829
Alw21I GWGCWC 2 cut(s) 613, 795
AlwI GGATC 1 cut(s) 577
AlwNI CAGNNNCTG 1 cut(s) 680
Ama87I CYCGRG 1 cut(s) 343
AoxI GGCC 1 cut(s) 769
ApeKI GCWGC 4 cut(s) 140, 380, 467, 527
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp700I GAANNNNTTC 1 cut(s) 442
AspLEI GCGC 2 cut(s) 385, 387
AspS9I GGNCC 3 cut(s) 410, 709, 769
AsuC2I CCSGG 2 cut(s) 344, 345
AsuHPI GGTGA 2 cut(s) 269, 932
AvaI CYCGRG 1 cut(s) 343
AvaII GGWCC 2 cut(s) 410, 709
BanII GRGCYC 1 cut(s) 795
BbsI GAAGAC 1 cut(s) 503
Bbv12I GWGCWC 2 cut(s) 613, 795
BbvI GCAGC 4 cut(s) 152, 367, 454, 514
BccI CCATC 2 cut(s) 68, 488
BceAI ACGGC 1 cut(s) 626
BcgI CGANNNNNNTGC 2 cut(s) 829, 863
BciT130I CCWGG 4 cut(s) 246, 707, 788, 917
BcnI CCSGG 2 cut(s) 344, 345
BfaI CTAG 2 cut(s) 96, 456
BfuAI ACCTGC 1 cut(s) 762
BisI GCNGC 4 cut(s) 141, 381, 468, 528
BlsI GCNGC 4 cut(s) 142, 382, 469, 529
BmcAI AGTACT 1 cut(s) 228
Bme1390I CCNGG 6 cut(s) 246, 344, 345, 707, 788, 917
Bme18I GGWCC 2 cut(s) 410, 709
BmeT110I CYCGRG 1 cut(s) 343
BmgT120I GGNCC 3 cut(s) 410, 709, 769
BmrFI CCNGG 6 cut(s) 246, 344, 345, 707, 788, 917
BmrI ACTGGG 1 cut(s) 668
BmsI GCATC 7 cut(s) 89, 208, 503, 584, 624, 628, 805
BmuI ACTGGG 1 cut(s) 668
BpiI GAAGAC 1 cut(s) 503
BpmI CTGGAG 1 cut(s) 698
BpuEI CTTGAG 2 cut(s) 516, 565
BpuMI CCSGG 2 cut(s) 344, 345
BsaBI GATNNNNATC 1 cut(s) 598
BsaJI CCNNGG 5 cut(s) 25, 324, 343, 876, 916
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 349, 680, 908
Bse1I ACTGG 3 cut(s) 450, 674, 685
Bse8I GATNNNNATC 1 cut(s) 598
BseBI CCWGG 4 cut(s) 246, 707, 788, 917
BseDI CCNNGG 5 cut(s) 25, 324, 343, 876, 916
BseGI GGATG 2 cut(s) 241, 480
BseJI GATNNNNATC 1 cut(s) 598
BseLI CCNNNNNNNGG 4 cut(s) 31, 349, 680, 908
BseNI ACTGG 3 cut(s) 450, 674, 685
BsePI GCGCGC 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 11
BseXI GCAGC 4 cut(s) 152, 367, 454, 514
BsgI GTGCAG 1 cut(s) 66
Bsh1236I CGCG 2 cut(s) 385, 387
BshFI GGCC 1 cut(s) 771
BsiHKAI GWGCWC 2 cut(s) 613, 795
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 1 cut(s) 344
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 4 cut(s) 31, 349, 680, 908
BsmFI GGGAC 1 cut(s) 563
BsnI GGCC 1 cut(s) 771
BsoBI CYCGRG 1 cut(s) 343
Bsp1286I GDGCHC 2 cut(s) 613, 795
Bsp143I GATC 2 cut(s) 310, 569
Bsp19I CCATGG 1 cut(s) 876
BspACI CCGC 2 cut(s) 181, 492
BspANI GGCC 1 cut(s) 771
BspFNI CGCG 2 cut(s) 385, 387
BspMI ACCTGC 1 cut(s) 762
BspPI GGATC 1 cut(s) 577
BspQI GCTCTTC 1 cut(s) 800
BsrI ACTGG 3 cut(s) 450, 674, 685
BssECI CCNNGG 5 cut(s) 25, 324, 343, 876, 916
BssHII GCGCGC 1 cut(s) 383
BssMI GATC 2 cut(s) 310, 569
BssT1I CCWWGG 3 cut(s) 25, 324, 876
Bst2UI CCWGG 4 cut(s) 246, 707, 788, 917
Bst4CI ACNGT 1 cut(s) 231
Bst6I CTCTTC 2 cut(s) 433, 800
BstC8I GCNNGC 8 cut(s) 71, 185, 340, 385, 472, 613, 703, 838
BstDSI CCRYGG 1 cut(s) 876
BstENI CCTNNNNNAGG 1 cut(s) 906
BstF5I GGATG 2 cut(s) 241, 480
BstFNI CGCG 2 cut(s) 385, 387
BstHHI GCGC 2 cut(s) 385, 387
BstKTI GATC 2 cut(s) 313, 572
BstMBI GATC 2 cut(s) 310, 569
BstMWI GCNNNNNNNGC 2 cut(s) 380, 647
BstNI CCWGG 4 cut(s) 246, 707, 788, 917
BstNSI RCATGY 1 cut(s) 342
BstSCI CCNGG 6 cut(s) 244, 342, 343, 705, 786, 915
BstUI CGCG 2 cut(s) 385, 387
BstV1I GCAGC 4 cut(s) 152, 367, 454, 514
BstV2I GAAGAC 1 cut(s) 503
BstXI CCANNNNNNTGG 2 cut(s) 586, 877
BsuRI GGCC 1 cut(s) 771
BtgI CCRYGG 1 cut(s) 876
BtsCI GGATG 2 cut(s) 241, 480
BtsIMutI CAGTG 1 cut(s) 457
BveI ACCTGC 1 cut(s) 762
Cac8I GCNNGC 8 cut(s) 71, 185, 340, 385, 472, 613, 703, 838
CaiI CAGNNNCTG 1 cut(s) 680
CfoI GCGC 2 cut(s) 385, 387
Cfr13I GGNCC 3 cut(s) 410, 709, 769
Cfr9I CCCGGG 1 cut(s) 343
CseI GACGC 1 cut(s) 168
Csp6I GTAC 3 cut(s) 227, 398, 742
CviAII CATG 4 cut(s) 194, 339, 417, 877
CviQI GTAC 3 cut(s) 227, 398, 742
DpnI GATC 2 cut(s) 312, 571
DpnII GATC 2 cut(s) 310, 569
Eam1104I CTCTTC 2 cut(s) 433, 800
EarI CTCTTC 2 cut(s) 433, 800
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 793
Eco130I CCWWGG 3 cut(s) 25, 324, 876
Eco24I GRGCYC 1 cut(s) 795
Eco47I GGWCC 2 cut(s) 410, 709
Eco53kI GAGCTC 1 cut(s) 793
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 793
EcoNI CCTNNNNNAGG 1 cut(s) 906
EcoO109I RGGNCCY 2 cut(s) 410, 769
EcoRII CCWGG 4 cut(s) 244, 705, 786, 915
EcoT14I CCWWGG 3 cut(s) 25, 324, 876
EcoT22I ATGCAT 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 795
ErhI CCWWGG 3 cut(s) 25, 324, 876
FaeI CATG 4 cut(s) 197, 342, 420, 880
FalI AAGNNNNNCTT 2 cut(s) 829, 861
FaqI GGGAC 1 cut(s) 563
FatI CATG 4 cut(s) 193, 338, 416, 876
FauI CCCGC 1 cut(s) 499
Fnu4HI GCNGC 4 cut(s) 141, 381, 468, 528
FokI GGATG 2 cut(s) 248, 467
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 4 cut(s) 141, 381, 468, 528
FspBI CTAG 2 cut(s) 96, 456
GlaI GCGC 2 cut(s) 384, 386
GluI GCNGC 4 cut(s) 141, 381, 468, 528
GsuI CTGGAG 1 cut(s) 698
HaeIII GGCC 1 cut(s) 771
HapII CCGG 1 cut(s) 344
HgaI GACGC 1 cut(s) 168
HhaI GCGC 2 cut(s) 385, 387
Hin1II CATG 4 cut(s) 197, 342, 420, 880
Hin6I GCGC 2 cut(s) 383, 385
HinP1I GCGC 2 cut(s) 383, 385
HinfI GANTC 3 cut(s) 389, 443, 930
HpaII CCGG 1 cut(s) 344
HphI GGTGA 2 cut(s) 269, 932
Hpy188I TCNGA 4 cut(s) 276, 315, 784, 929
Hpy188III TCNNGA 2 cut(s) 567, 715
HpyAV CCTTC 3 cut(s) 328, 423, 782
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 8 cut(s) 47, 110, 124, 187, 470, 597, 701, 939
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 647
Hsp92II CATG 4 cut(s) 197, 342, 420, 880
HspAI GCGC 2 cut(s) 383, 385
Kzo9I GATC 2 cut(s) 310, 569
LguI GCTCTTC 1 cut(s) 800
LmnI GCTCC 1 cut(s) 790
Lsp1109I GCAGC 4 cut(s) 152, 367, 454, 514
LweI GCATC 7 cut(s) 89, 208, 503, 584, 624, 628, 805
MaeI CTAG 2 cut(s) 96, 456
MaeIII GTNAC 3 cut(s) 15, 174, 676
MalI GATC 2 cut(s) 312, 571
MboI GATC 2 cut(s) 310, 569
MboII GAAGA 6 cut(s) 44, 447, 450, 503, 767, 787
MfeI CAATTG 2 cut(s) 667, 934
MhlI GDGCHC 2 cut(s) 613, 795
MluCI AATT 4 cut(s) 667, 736, 934, 949
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 2 cut(s) 104, 213
MnlI CCTC 8 cut(s) 32, 287, 401, 487, 495, 540, 722, 912
Mph1103I ATGCAT 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 442
MseI TTAA 3 cut(s) 147, 318, 952
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 6 cut(s) 246, 344, 345, 707, 788, 917
MunI CAATTG 2 cut(s) 667, 934
MvaI CCWGG 4 cut(s) 246, 707, 788, 917
MvnI CGCG 2 cut(s) 385, 387
MwoI GCNNNNNNNGC 2 cut(s) 380, 647
NciI CCSGG 2 cut(s) 344, 345
NcoI CCATGG 1 cut(s) 876
NdeII GATC 2 cut(s) 310, 569
NlaIII CATG 4 cut(s) 197, 342, 420, 880
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 1 cut(s) 342
PaeI GCATGC 1 cut(s) 342
PauI GCGCGC 1 cut(s) 383
PciSI GCTCTTC 1 cut(s) 800
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 2 cut(s) 443, 930
PflFI GACNNNGTC 1 cut(s) 554
PflMI CCANNNNNTGG 1 cut(s) 680
PkrI GCNGC 4 cut(s) 142, 382, 469, 529
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
PpuMI RGGWCCY 1 cut(s) 410
Psp124BI GAGCTC 1 cut(s) 795
Psp5II RGGWCCY 1 cut(s) 410
Psp6I CCWGG 4 cut(s) 244, 705, 786, 915
PspGI CCWGG 4 cut(s) 244, 705, 786, 915
PspPI GGNCC 3 cut(s) 410, 709, 769
PspPPI RGGWCCY 1 cut(s) 410
PstNI CAGNNNCTG 1 cut(s) 680
PsyI GACNNNGTC 1 cut(s) 554
PteI GCGCGC 1 cut(s) 383
RsaI GTAC 3 cut(s) 228, 399, 743
RsaNI GTAC 3 cut(s) 227, 398, 742
RseI CAYNNNNRTG 1 cut(s) 192
SacI GAGCTC 1 cut(s) 795
SapI GCTCTTC 1 cut(s) 800
SaqAI TTAA 3 cut(s) 147, 318, 952
SatI GCNGC 4 cut(s) 141, 381, 468, 528
Sau3AI GATC 2 cut(s) 310, 569
Sau96I GGNCC 3 cut(s) 410, 709, 769
ScaI AGTACT 1 cut(s) 228
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 6 cut(s) 246, 344, 345, 707, 788, 917
SduI GDGCHC 2 cut(s) 613, 795
SfaNI GCATC 7 cut(s) 89, 208, 503, 584, 624, 628, 805
SinI GGWCC 2 cut(s) 410, 709
SmaI CCCGGG 1 cut(s) 345
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 2 cut(s) 531, 544
SmoI CTYRAG 2 cut(s) 531, 544
SphI GCATGC 1 cut(s) 342
Sse9I AATT 4 cut(s) 667, 736, 934, 949
SsiI CCGC 2 cut(s) 181, 492
SspMI CTAG 2 cut(s) 96, 456
SstI GAGCTC 1 cut(s) 795
StyD4I CCNGG 6 cut(s) 244, 342, 343, 705, 786, 915
StyI CCWWGG 3 cut(s) 25, 324, 876
TaaI ACNGT 1 cut(s) 231
TaqI TCGA 2 cut(s) 518, 607
TasI AATT 4 cut(s) 667, 736, 934, 949
TatI WGTACW 3 cut(s) 226, 397, 741
TfiI GAWTC 2 cut(s) 443, 930
Tru1I TTAA 3 cut(s) 147, 318, 952
Tru9I TTAA 3 cut(s) 147, 318, 952
TscAI CASTG 1 cut(s) 457
TseI GCWGC 4 cut(s) 140, 380, 467, 527
TspDTI ATGAA 2 cut(s) 405, 767
TspMI CCCGGG 1 cut(s) 343
TspRI CASTG 1 cut(s) 457
Tth111I GACNNNGTC 1 cut(s) 554
Van91I CCANNNNNTGG 1 cut(s) 680
VpaK11BI GGWCC 2 cut(s) 410, 709
XagI CCTNNNNNAGG 1 cut(s) 906
XceI RCATGY 1 cut(s) 342
XcmI CCANNNNNNNNNTGG 1 cut(s) 883
XmaI CCCGGG 1 cut(s) 343
XmnI GAANNNNTTC 1 cut(s) 442
XspI CTAG 2 cut(s) 96, 456
ZrmI AGTACT 1 cut(s) 228
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.