MD01G1162100.v1.1

peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0017366
Physical Location & Seq
Reverse (-)
26715130 .. 26716536
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1162100.v1.1.491

Sequence Viewer

Length: 1029 bp
ATGATGTCACGGATCTGCCCCCTATATATGAATGTGTGTGTGATCCTCTACAAGCCTCTAGAGAAGGGTAACATGGCTTCCAATTACCACTTATTCCTACTTATCTTTGTCTTTGCTGGTGCATTTCTTGAATCCAACTGCGAGCTCACTCAAAATTTCTACAAATCCAAATGTCCAAAAGCTTTGTCCATTGTGCAAGAAGGAGTTATAGCAGCCATAAAAAACGAAACGCGCATCGGAGCTTCCTTGCTCCGTCTGCATTTCCACGATTGCTTCGTAAATGGTTGTGATGCGTCGGTGCTGTTGGACGATACATCAAGCTTTGTTGGTGAGAAAACAGCAGCTCCTAACAACAACTCCATTAGAGGATTTGAAGTTGTTGATCAAATTAAAGCCAAGCTTGAGAAAGCATGCCCCGGAGTAGTCTCATGTGCTGATCTTCTAGCTCTTGCTGCGCGTGACTCAACAGTTTATTTGGGAGGTCCTTCATGGAAAGTTGGTTTGGGAAGAAGAGATTCAACCACTGCTAGCAGAAGTGCTGCCAACACCTTCCTTCCTTCACCAACTTCCAATATAAGTGCTTTAATTTCAAGCTTCTCTGCACAAGGCCTCTCCTTAAGGGACTTGGTCGCTCTTTCTGGTTCTCACACAATTGGCCTTGCAAGATGCACAACATTCCGCTCACGCATCTACAACGACTCCGCCATCGACGCCACCTTTGCCCAGTCATTGCAGGGAATTTGCCCAAGAAGCGGAAATGACGACAACCTTGCAAGCCTTGACCTCCAGACCCCAACACATTTTGATAACGAGTACTACAAGAATTTGTTGAAAGAAAAGGGACTTCTTCATTCAGACCAGGAGCTCTTCAACGGAACAACTTCTACAGATAATCTGGTTCAAATTTATACAAATAACACATTGACATTCTTCAAGCACTTTGCCGTGGCCATGGTCAAAATGGGAAACATCAGTCCTCTTACGGGAAGTCAGGGCGAAATCAGAACTAATTGCAGAAAAGTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

343

Amino Acids

37.26

Weight (kDa)

8.24

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 65 - 306 3.3e-87 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017366)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25550
malus_domestica MD01G1162100.v1.1 MD01G1162400.v1.1 MD07G1230500.v1.1
prunus_persica Prupe.2G260600_v2.0.a1
pyrus_communis pycom07g20800
rosa_chinensis RchiOBHm_Chr1g0371551
rosa_multiflora Rmu_sc0000948.1_g000034
rosa_roxburghii Rroxscaffold_4G00285560
rosa_rugosa Rorug01G0365300
rosa_samantha Rh1BG338700 Rh1DG369700
rosa_wichuraiana Rw1G033010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 681
AccII CGCG 2 cut(s) 232, 457
AciI CCGC 3 cut(s) 679, 702, 753
AclWI GGATC 2 cut(s) 20, 37
AcoI YGGCCR 1 cut(s) 948
AcsI RAATTY 4 cut(s) 154, 738, 823, 903
AcyI GRCGYC 1 cut(s) 711
AfaI GTAC 1 cut(s) 815
AfiI CCNNNNNNNGG 2 cut(s) 752, 983
AflII CTTAAG 1 cut(s) 616
AgsI TTSAA 8 cut(s) 131, 374, 519, 591, 832, 871, 902, 934
AjnI CCWGG 1 cut(s) 858
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AluBI AGCT 9 cut(s) 145, 182, 242, 321, 344, 400, 446, 594, 865
AluI AGCT 9 cut(s) 145, 182, 242, 321, 344, 400, 446, 594, 865
Alw21I GWGCWC 2 cut(s) 147, 867
Alw26I GTCTC 1 cut(s) 430
AlwI GGATC 2 cut(s) 20, 37
AoxI GGCC 3 cut(s) 607, 655, 948
ApeKI GCWGC 4 cut(s) 212, 341, 452, 539
ApoI RAATTY 4 cut(s) 154, 738, 823, 903
ArsI GACNNNNNNTTYG 4 cut(s) 170, 202, 701, 733
Asp700I GAANNNNTTC 2 cut(s) 514, 880
AspLEI GCGC 2 cut(s) 234, 457
AspS9I GGNCC 1 cut(s) 482
AsuC2I CCSGG 1 cut(s) 417
AsuHPI GGTGA 2 cut(s) 341, 552
AsuNHI GCTAGC 1 cut(s) 527
AvaII GGWCC 1 cut(s) 482
BalI TGGCCA 1 cut(s) 950
BanII GRGCYC 2 cut(s) 147, 867
BarI GAAGNNNNNNTAC 2 cut(s) 61, 93
Bbv12I GWGCWC 2 cut(s) 147, 867
BbvI GCAGC 4 cut(s) 224, 353, 439, 526
BccI CCATC 1 cut(s) 713
BceAI ACGGC 1 cut(s) 929
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 1 cut(s) 860
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 417
BcoDI GTCTC 1 cut(s) 430
BfaI CTAG 3 cut(s) 59, 443, 528
BfmI CTRYAG 1 cut(s) 885
BfrI CTTAAG 1 cut(s) 616
BisI GCNGC 4 cut(s) 213, 342, 453, 540
BlsI GCNGC 4 cut(s) 214, 343, 454, 541
BmcAI AGTACT 1 cut(s) 815
Bme1390I CCNGG 2 cut(s) 417, 860
Bme18I GGWCC 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 482
BmrFI CCNGG 2 cut(s) 417, 860
BmrI ACTGGG 1 cut(s) 718
BmsI GCATC 4 cut(s) 243, 280, 656, 696
BmtI GCTAGC 1 cut(s) 531
BmuI ACTGGG 1 cut(s) 718
BpmI CTGGAG 1 cut(s) 770
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 711
BsaJI CCNNGG 3 cut(s) 415, 945, 951
BsaXI ACNNNNNCTCC 6 cut(s) 328, 341, 358, 371, 683, 713
Bsc4I CCNNNNNNNGG 2 cut(s) 752, 983
Bse1I ACTGG 1 cut(s) 724
Bse3DI GCAATG 1 cut(s) 728
BseBI CCWGG 1 cut(s) 860
BseDI CCNNGG 3 cut(s) 415, 945, 951
BseLI CCNNNNNNNGG 2 cut(s) 752, 983
BseMI GCAATG 1 cut(s) 728
BseNI ACTGG 1 cut(s) 724
BseXI GCAGC 4 cut(s) 224, 353, 439, 526
BsgI GTGCAG 1 cut(s) 585
Bsh1236I CGCG 2 cut(s) 232, 457
BshFI GGCC 3 cut(s) 609, 657, 950
BsiHKAI GWGCWC 2 cut(s) 147, 867
BsiSI CCGG 1 cut(s) 417
BslFI GGGAC 2 cut(s) 635, 855
BslI CCNNNNNNNGG 2 cut(s) 752, 983
BsmAI GTCTC 1 cut(s) 430
BsmFI GGGAC 2 cut(s) 635, 855
BsnI GGCC 3 cut(s) 609, 657, 950
Bsp1286I GDGCHC 2 cut(s) 147, 867
Bsp143I GATC 4 cut(s) 12, 42, 382, 436
Bsp19I CCATGG 1 cut(s) 951
BspACI CCGC 3 cut(s) 679, 702, 753
BspANI GGCC 3 cut(s) 609, 657, 950
BspFNI CGCG 2 cut(s) 232, 457
BspOI GCTAGC 1 cut(s) 531
BspPI GGATC 2 cut(s) 20, 37
BspQI GCTCTTC 1 cut(s) 872
BspTI CTTAAG 1 cut(s) 616
BsrBI CCGCTC 1 cut(s) 681
BsrDI GCAATG 1 cut(s) 728
BsrI ACTGG 1 cut(s) 724
BssECI CCNNGG 3 cut(s) 415, 945, 951
BssMI GATC 4 cut(s) 12, 42, 382, 436
BssNI GRCGYC 1 cut(s) 711
BssT1I CCWWGG 1 cut(s) 951
Bst2UI CCWGG 1 cut(s) 860
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 2 cut(s) 505, 872
BstACI GRCGYC 1 cut(s) 711
BstAFI CTTAAG 1 cut(s) 616
BstC8I GCNNGC 4 cut(s) 143, 412, 529, 775
BstDSI CCRYGG 2 cut(s) 945, 951
BstFNI CGCG 2 cut(s) 232, 457
BstHHI GCGC 2 cut(s) 234, 457
BstKTI GATC 4 cut(s) 15, 45, 385, 439
BstMAI GTCTC 1 cut(s) 430
BstMBI GATC 4 cut(s) 12, 42, 382, 436
BstMWI GCNNNNNNNGC 5 cut(s) 256, 452, 710, 719, 750
BstNI CCWGG 1 cut(s) 860
BstNSI RCATGY 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 415, 858
BstSFI CTRYAG 1 cut(s) 885
BstUI CGCG 2 cut(s) 232, 457
BstV1I GCAGC 4 cut(s) 224, 353, 439, 526
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
BsuRI GGCC 3 cut(s) 609, 657, 950
BtgI CCRYGG 2 cut(s) 945, 951
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 522
Cac8I GCNNGC 4 cut(s) 143, 412, 529, 775
CfoI GCGC 2 cut(s) 234, 457
Cfr13I GGNCC 1 cut(s) 482
CseI GACGC 2 cut(s) 282, 719
Csp6I GTAC 1 cut(s) 814
CviAII CATG 5 cut(s) 73, 411, 429, 489, 952
CviQI GTAC 1 cut(s) 814
DpnI GATC 4 cut(s) 14, 44, 384, 438
DpnII GATC 4 cut(s) 12, 42, 382, 436
EaeI YGGCCR 1 cut(s) 948
Eam1104I CTCTTC 2 cut(s) 505, 872
EarI CTCTTC 2 cut(s) 505, 872
EciI GGCGGA 1 cut(s) 691
Ecl136II GAGCTC 2 cut(s) 145, 865
Eco130I CCWWGG 1 cut(s) 951
Eco147I AGGCCT 1 cut(s) 609
Eco24I GRGCYC 2 cut(s) 147, 867
Eco47I GGWCC 1 cut(s) 482
Eco53kI GAGCTC 2 cut(s) 145, 865
EcoICRI GAGCTC 2 cut(s) 145, 865
EcoO109I RGGNCCY 1 cut(s) 482
EcoRII CCWGG 1 cut(s) 858
EcoT14I CCWWGG 1 cut(s) 951
EcoT38I GRGCYC 2 cut(s) 147, 867
ErhI CCWWGG 1 cut(s) 951
FaeI CATG 5 cut(s) 76, 414, 432, 492, 955
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FaqI GGGAC 2 cut(s) 635, 855
FatI CATG 5 cut(s) 72, 410, 428, 488, 951
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 4 cut(s) 213, 342, 453, 540
FriOI GRGCYC 2 cut(s) 147, 867
Fsp4HI GCNGC 4 cut(s) 213, 342, 453, 540
FspBI CTAG 3 cut(s) 59, 443, 528
GlaI GCGC 2 cut(s) 233, 456
GluI GCNGC 4 cut(s) 213, 342, 453, 540
GsuI CTGGAG 1 cut(s) 770
HaeIII GGCC 3 cut(s) 609, 657, 950
HapII CCGG 1 cut(s) 417
HgaI GACGC 2 cut(s) 282, 719
HhaI GCGC 2 cut(s) 234, 457
Hin1I GRCGYC 1 cut(s) 711
Hin1II CATG 5 cut(s) 76, 414, 432, 492, 955
Hin6I GCGC 2 cut(s) 232, 455
HinP1I GCGC 2 cut(s) 232, 455
HindIII AAGCTT 4 cut(s) 180, 319, 398, 592
HinfI GANTC 4 cut(s) 131, 461, 515, 698
HpaII CCGG 1 cut(s) 417
HphI GGTGA 2 cut(s) 341, 552
Hpy166II GTNNAC 1 cut(s) 1024
Hpy188I TCNGA 3 cut(s) 239, 856, 1004
Hpy188III TCNNGA 3 cut(s) 59, 128, 787
Hpy8I GTNNAC 1 cut(s) 1024
Hpy99I CGWCG 2 cut(s) 298, 713
HpyAV CCTTC 6 cut(s) 58, 194, 495, 559, 563, 567
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4V TGCA 9 cut(s) 122, 196, 259, 602, 662, 669, 733, 773, 1014
HpyF10VI GCNNNNNNNGC 5 cut(s) 256, 452, 710, 719, 750
Hsp92I GRCGYC 1 cut(s) 711
Hsp92II CATG 5 cut(s) 76, 414, 432, 492, 955
HspAI GCGC 2 cut(s) 232, 455
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 4 cut(s) 12, 42, 382, 436
LguI GCTCTTC 1 cut(s) 872
LmnI GCTCC 4 cut(s) 239, 255, 349, 862
Lsp1109I GCAGC 4 cut(s) 224, 353, 439, 526
LweI GCATC 4 cut(s) 243, 280, 656, 696
MaeI CTAG 3 cut(s) 59, 443, 528
MaeIII GTNAC 3 cut(s) 6, 68, 458
MalI GATC 4 cut(s) 14, 44, 384, 438
MbiI CCGCTC 1 cut(s) 681
MboI GATC 4 cut(s) 12, 42, 382, 436
MboII GAAGA 6 cut(s) 431, 519, 522, 839, 859, 922
MfeI CAATTG 1 cut(s) 651
MflI RGATCY 1 cut(s) 12
MhlI GDGCHC 2 cut(s) 147, 867
MlsI TGGCCA 1 cut(s) 950
MluCI AATT 9 cut(s) 82, 154, 387, 585, 651, 738, 823, 903, 1009
MluNI TGGCCA 1 cut(s) 950
MlyI GAGTC 2 cut(s) 455, 692
MmeI TCCRAC 2 cut(s) 159, 285
MnlI CCTC 7 cut(s) 56, 66, 359, 473, 620, 794, 987
Mox20I TGGCCA 1 cut(s) 950
MroXI GAANNNNTTC 2 cut(s) 514, 880
MscI TGGCCA 1 cut(s) 950
MseI TTAA 3 cut(s) 390, 584, 617
Msp20I TGGCCA 1 cut(s) 950
MspCI CTTAAG 1 cut(s) 616
MspI CCGG 1 cut(s) 417
MspR9I CCNGG 2 cut(s) 417, 860
MunI CAATTG 1 cut(s) 651
MvaI CCWGG 1 cut(s) 860
MvnI CGCG 2 cut(s) 232, 457
MwoI GCNNNNNNNGC 5 cut(s) 256, 452, 710, 719, 750
NciI CCSGG 1 cut(s) 417
NcoI CCATGG 1 cut(s) 951
NdeII GATC 4 cut(s) 12, 42, 382, 436
NheI GCTAGC 1 cut(s) 527
NlaIII CATG 5 cut(s) 76, 414, 432, 492, 955
NmuCI GTSAC 2 cut(s) 6, 458
NspI RCATGY 1 cut(s) 414
PaeI GCATGC 1 cut(s) 414
PceI AGGCCT 1 cut(s) 609
PciSI GCTCTTC 1 cut(s) 872
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PdmI GAANNNNTTC 2 cut(s) 514, 880
PfeI GAWTC 2 cut(s) 131, 515
PflFI GACNNNGTC 1 cut(s) 626
PkrI GCNGC 4 cut(s) 214, 343, 454, 541
PleI GAGTC 2 cut(s) 455, 692
PpsI GAGTC 2 cut(s) 455, 692
PpuMI RGGWCCY 1 cut(s) 482
Psp124BI GAGCTC 2 cut(s) 147, 867
Psp5II RGGWCCY 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 858
PspGI CCWGG 1 cut(s) 858
PspPI GGNCC 1 cut(s) 482
PspPPI RGGWCCY 1 cut(s) 482
PsrI GAACNNNNNNTAC 2 cut(s) 868, 900
PsuI RGATCY 1 cut(s) 12
PsyI GACNNNGTC 1 cut(s) 626
RsaI GTAC 1 cut(s) 815
RsaNI GTAC 1 cut(s) 814
SacI GAGCTC 2 cut(s) 147, 867
SapI GCTCTTC 1 cut(s) 872
SaqAI TTAA 3 cut(s) 390, 584, 617
SatI GCNGC 4 cut(s) 213, 342, 453, 540
Sau3AI GATC 4 cut(s) 12, 42, 382, 436
Sau96I GGNCC 1 cut(s) 482
ScaI AGTACT 1 cut(s) 815
SchI GAGTC 2 cut(s) 455, 692
ScrFI CCNGG 2 cut(s) 417, 860
SduI GDGCHC 2 cut(s) 147, 867
SfaNI GCATC 4 cut(s) 243, 280, 656, 696
SfcI CTRYAG 1 cut(s) 885
SinI GGWCC 1 cut(s) 482
SmlI CTYRAG 2 cut(s) 401, 616
SmoI CTYRAG 2 cut(s) 401, 616
SphI GCATGC 1 cut(s) 414
Sse9I AATT 9 cut(s) 82, 154, 387, 585, 651, 738, 823, 903, 1009
SseBI AGGCCT 1 cut(s) 609
SsiI CCGC 3 cut(s) 679, 702, 753
SspMI CTAG 3 cut(s) 59, 443, 528
SstI GAGCTC 2 cut(s) 147, 867
StuI AGGCCT 1 cut(s) 609
StyD4I CCNGG 2 cut(s) 415, 858
StyI CCWWGG 1 cut(s) 951
TaaI ACNGT 1 cut(s) 469
TaqI TCGA 1 cut(s) 708
TasI AATT 9 cut(s) 82, 154, 387, 585, 651, 738, 823, 903, 1009
TatI WGTACW 1 cut(s) 813
TfiI GAWTC 2 cut(s) 131, 515
Tru1I TTAA 3 cut(s) 390, 584, 617
Tru9I TTAA 3 cut(s) 390, 584, 617
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 2 cut(s) 6, 458
TseI GCWGC 4 cut(s) 212, 341, 452, 539
Tsp45I GTSAC 2 cut(s) 6, 458
TspDTI ATGAA 3 cut(s) 44, 477, 839
TspGWI ACGGA 3 cut(s) 25, 242, 888
TspRI CASTG 1 cut(s) 529
Tth111I GACNNNGTC 1 cut(s) 626
Vha464I CTTAAG 1 cut(s) 616
VpaK11BI GGWCC 1 cut(s) 482
XapI RAATTY 4 cut(s) 154, 738, 823, 903
XbaI TCTAGA 1 cut(s) 58
XceI RCATGY 1 cut(s) 414
XcmI CCANNNNNNNNNTGG 1 cut(s) 958
XmnI GAANNNNTTC 2 cut(s) 514, 880
XspI CTAG 3 cut(s) 59, 443, 528
ZrmI AGTACT 1 cut(s) 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.