Rorug01G0365300

peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017366
Physical Location & Seq
Forward (+)
48024206 .. 48024898
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0365300.1

Sequence Viewer

Length: 693 bp
ATGACAGAGACTGACATTGAAATTGACTGTTTGCATCAAGGTACTGATTTCTATACTAGTATTACTCGAGGAAAATTTGAACAACTGAACATGGATTTCTTCAACAAGTGTGTGGAGCCTGTGGAGAAGTGTCTGAAGGATGCAAACATGGGCAAAAGCAGTGTACATGATGTTGTTCTTGCTGGTGGCTCTTCTAGAATTCCAAAACTACAACAGATATTACAGGATTTGTTCCAAGGGATAGAGTTGTGCAAGGGCATTAATCCAGATGAGGCTGTGGCATATGGTGCTGCTGTTGAAGCTGCTGTATTAAGTGGGAATGGAAATGGGGAGCTTCAAGACTTCACTCTCTTGGATGTCACCCCTTTCTCACTTGGCGTTGAGACTGGTTATGATGGTAAGATGACAGTTCTGATTCCAAGAAACACTACAATTCCTGTCATGAAAAACCAATATTTAACTACTGGTTATGACAATCAAGTTGGGGCCCTATATAGGATTTATGAGGGCGAGAATGCAATGGCAGTATACAATAATCTTTTGGGTGAGTTTTCCCTAGACAACATTCCTCCAGCTCCCAAGGGTGTTCCTCAACTGAATACTTGCTTTCATATTGATTGTAATGGTTTATTGAGTGTGTTTGCTGATGAGATGTCGACCGGCCAGAAGAAAGGGATCACAATTAACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

230

Amino Acids

25.13

Weight (kDa)

4.6

Isoelectric Point (pI)

29.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 2 - 229 6e-72 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017366)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25550
malus_domestica MD01G1162100.v1.1 MD01G1162400.v1.1 MD07G1230500.v1.1
prunus_persica Prupe.2G260600_v2.0.a1
pyrus_communis pycom07g20800
rosa_chinensis RchiOBHm_Chr1g0371551
rosa_multiflora Rmu_sc0000948.1_g000034
rosa_roxburghii Rroxscaffold_4G00285560
rosa_rugosa Rorug01G0365300
rosa_samantha Rh1BG338700 Rh1DG369700
rosa_wichuraiana Rw1G033010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 528, 656
AclWI GGATC 1 cut(s) 683
AcoI YGGCCR 1 cut(s) 661
AcsI RAATTY 2 cut(s) 74, 198
AcuI CTGAAG 1 cut(s) 155
AfaI GTAC 2 cut(s) 43, 165
AfiI CCNNNNNNNGG 1 cut(s) 495
AgsI TTSAA 5 cut(s) 20, 80, 103, 299, 338
AhlI ACTAGT 1 cut(s) 56
AluBI AGCT 3 cut(s) 302, 334, 575
AluI AGCT 3 cut(s) 302, 334, 575
Alw26I GTCTC 2 cut(s) 2, 377
AlwI GGATC 1 cut(s) 683
AlwNI CAGNNNCTG 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 2 cut(s) 486, 661
ApaI GGGCCC 1 cut(s) 490
ApeKI GCWGC 2 cut(s) 290, 302
ApoI RAATTY 2 cut(s) 74, 198
AseI ATTAAT 1 cut(s) 261
AspS9I GGNCC 2 cut(s) 486, 487
AsuHPI GGTGA 2 cut(s) 352, 557
AvaI CYCGRG 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 490
BbvI GCAGC 2 cut(s) 277, 289
BccI CCATC 1 cut(s) 389
BcoDI GTCTC 2 cut(s) 2, 377
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 3 cut(s) 57, 195, 557
BisI GCNGC 2 cut(s) 291, 303
BlsI GCNGC 2 cut(s) 292, 304
BmeT110I CYCGRG 1 cut(s) 66
BmgT120I GGNCC 2 cut(s) 486, 487
BmiI GGNNCC 3 cut(s) 117, 487, 488
BmsI GCATC 2 cut(s) 43, 130
BpmI CTGGAG 1 cut(s) 555
BsaJI CCNNGG 2 cut(s) 235, 579
Bsc4I CCNNNNNNNGG 1 cut(s) 495
Bse118I RCCGGY 1 cut(s) 659
Bse1I ACTGG 2 cut(s) 391, 469
Bse3DI GCAATG 1 cut(s) 525
BseDI CCNNGG 2 cut(s) 235, 579
BseGI GGATG 2 cut(s) 145, 361
BseLI CCNNNNNNNGG 1 cut(s) 495
BseMI GCAATG 1 cut(s) 525
BseNI ACTGG 2 cut(s) 391, 469
BseSI GKGCMC 1 cut(s) 490
BseXI GCAGC 2 cut(s) 277, 289
Bsh1285I CGRYCG 1 cut(s) 660
BshFI GGCC 2 cut(s) 488, 663
BsiEI CGRYCG 1 cut(s) 660
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 1 cut(s) 660
BslI CCNNNNNNNGG 1 cut(s) 495
BsmAI GTCTC 2 cut(s) 2, 377
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 2 cut(s) 488, 663
BsoBI CYCGRG 1 cut(s) 66
Bsp120I GGGCCC 1 cut(s) 486
Bsp1286I GDGCHC 1 cut(s) 490
Bsp1407I TGTACA 1 cut(s) 163
Bsp143I GATC 1 cut(s) 675
BspANI GGCC 2 cut(s) 488, 663
BspHI TCATGA 1 cut(s) 441
BspLI GGNNCC 3 cut(s) 117, 487, 488
BspPI GGATC 1 cut(s) 683
BspQI GCTCTTC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 525
BsrFI RCCGGY 1 cut(s) 659
BsrGI TGTACA 1 cut(s) 163
BsrI ACTGG 2 cut(s) 391, 469
BssAI RCCGGY 1 cut(s) 659
BssECI CCNNGG 2 cut(s) 235, 579
BssMI GATC 1 cut(s) 675
BssNAI GTATAC 1 cut(s) 529
BssT1I CCWWGG 2 cut(s) 235, 579
Bst1107I GTATAC 1 cut(s) 529
Bst4CI ACNGT 2 cut(s) 29, 409
Bst6I CTCTTC 1 cut(s) 196
BstAPI GCANNNNNTGC 1 cut(s) 287
BstAUI TGTACA 1 cut(s) 163
BstF5I GGATG 2 cut(s) 145, 361
BstKTI GATC 1 cut(s) 678
BstMAI GTCTC 2 cut(s) 2, 377
BstMBI GATC 1 cut(s) 675
BstMCI CGRYCG 1 cut(s) 660
BstMWI GCNNNNNNNGC 2 cut(s) 287, 299
BstSLI GKGCMC 1 cut(s) 490
BstV1I GCAGC 2 cut(s) 277, 289
BstZ17I GTATAC 1 cut(s) 529
BsuRI GGCC 2 cut(s) 488, 663
BtsCI GGATG 2 cut(s) 145, 361
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 166
CaiI CAGNNNCTG 1 cut(s) 11
CciI TCATGA 1 cut(s) 441
Cfr10I RCCGGY 1 cut(s) 659
Cfr13I GGNCC 2 cut(s) 486, 487
Csp6I GTAC 2 cut(s) 42, 164
CviAII CATG 4 cut(s) 91, 148, 167, 442
CviJI RGCY 8 cut(s) 118, 189, 275, 302, 334, 488, 575, 663
CviKI_1 RGCY 8 cut(s) 118, 189, 275, 302, 334, 488, 575, 663
CviQI GTAC 2 cut(s) 42, 164
DpnI GATC 1 cut(s) 677
DpnII GATC 1 cut(s) 675
EaeI YGGCCR 1 cut(s) 661
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 235, 579
Eco24I GRGCYC 1 cut(s) 490
Eco57I CTGAAG 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 66
EcoO109I RGGNCCY 2 cut(s) 486, 487
EcoRI GAATTC 1 cut(s) 198
EcoT14I CCWWGG 2 cut(s) 235, 579
EcoT38I GRGCYC 1 cut(s) 490
ErhI CCWWGG 2 cut(s) 235, 579
FaeI CATG 4 cut(s) 94, 151, 170, 445
FatI CATG 4 cut(s) 90, 147, 166, 441
FauNDI CATATG 1 cut(s) 283
FblI GTMKAC 2 cut(s) 528, 656
Fnu4HI GCNGC 2 cut(s) 291, 303
FokI GGATG 2 cut(s) 152, 368
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 2 cut(s) 291, 303
FspBI CTAG 3 cut(s) 57, 195, 557
GluI GCNGC 2 cut(s) 291, 303
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 2 cut(s) 488, 663
HapII CCGG 1 cut(s) 660
Hin1II CATG 4 cut(s) 94, 151, 170, 445
HincII GTYRAC 1 cut(s) 657
HindII GTYRAC 1 cut(s) 657
HinfI GANTC 1 cut(s) 415
HpaII CCGG 1 cut(s) 660
HphI GGTGA 2 cut(s) 352, 557
Hpy166II GTNNAC 3 cut(s) 164, 529, 657
Hpy188I TCNGA 2 cut(s) 135, 414
Hpy188III TCNNGA 4 cut(s) 195, 266, 338, 442
Hpy8I GTNNAC 3 cut(s) 164, 529, 657
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 2 cut(s) 29, 409
HpyCH4V TGCA 4 cut(s) 34, 143, 252, 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 299
Hsp92II CATG 4 cut(s) 94, 151, 170, 445
Kzo9I GATC 1 cut(s) 675
LguI GCTCTTC 1 cut(s) 196
LmnI GCTCC 3 cut(s) 115, 331, 580
Lsp1109I GCAGC 2 cut(s) 277, 289
LweI GCATC 2 cut(s) 43, 130
MaeI CTAG 3 cut(s) 57, 195, 557
MaeIII GTNAC 1 cut(s) 358
MalI GATC 1 cut(s) 677
MboI GATC 1 cut(s) 675
MboII GAAGA 3 cut(s) 91, 183, 679
MhlI GDGCHC 1 cut(s) 490
MluCI AATT 5 cut(s) 21, 74, 198, 432, 681
MnlI CCTC 5 cut(s) 62, 265, 499, 579, 600
MseI TTAA 4 cut(s) 261, 311, 458, 684
MspI CCGG 1 cut(s) 660
Mva1269I GAATGC 1 cut(s) 520
MwoI GCNNNNNNNGC 2 cut(s) 287, 299
NdeI CATATG 1 cut(s) 283
NdeII GATC 1 cut(s) 675
NlaIII CATG 4 cut(s) 94, 151, 170, 445
NlaIV GGNNCC 3 cut(s) 117, 487, 488
NmuCI GTSAC 1 cut(s) 358
PaeR7I CTCGAG 1 cut(s) 66
PagI TCATGA 1 cut(s) 441
PciSI GCTCTTC 1 cut(s) 196
PctI GAATGC 1 cut(s) 520
PfeI GAWTC 1 cut(s) 415
PkrI GCNGC 2 cut(s) 292, 304
PshBI ATTAAT 1 cut(s) 261
PspN4I GGNNCC 3 cut(s) 117, 487, 488
PspOMI GGGCCC 1 cut(s) 486
PspPI GGNCC 2 cut(s) 486, 487
PspXI VCTCGAGB 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 11
RsaI GTAC 2 cut(s) 43, 165
RsaNI GTAC 2 cut(s) 42, 164
SalI GTCGAC 1 cut(s) 655
SapI GCTCTTC 1 cut(s) 196
SaqAI TTAA 4 cut(s) 261, 311, 458, 684
SatI GCNGC 2 cut(s) 291, 303
Sau3AI GATC 1 cut(s) 675
Sau96I GGNCC 2 cut(s) 486, 487
SduI GDGCHC 1 cut(s) 490
SetI ASST 4 cut(s) 43, 304, 336, 577
SfaNI GCATC 2 cut(s) 43, 130
Sfr274I CTCGAG 1 cut(s) 66
SlaI CTCGAG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
SpeI ACTAGT 1 cut(s) 56
Sse9I AATT 5 cut(s) 21, 74, 198, 432, 681
SspI AATATT 1 cut(s) 455
SspMI CTAG 3 cut(s) 57, 195, 557
StyI CCWWGG 2 cut(s) 235, 579
TaaI ACNGT 2 cut(s) 29, 409
TaqI TCGA 2 cut(s) 67, 656
TasI AATT 5 cut(s) 21, 74, 198, 432, 681
TatI WGTACW 1 cut(s) 163
TfiI GAWTC 1 cut(s) 415
Tru1I TTAA 4 cut(s) 261, 311, 458, 684
Tru9I TTAA 4 cut(s) 261, 311, 458, 684
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 2 cut(s) 290, 302
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 2 cut(s) 458, 599
TspRI CASTG 1 cut(s) 166
VspI ATTAAT 1 cut(s) 261
XapI RAATTY 2 cut(s) 74, 198
XbaI TCTAGA 1 cut(s) 194
XhoI CTCGAG 1 cut(s) 66
XmiI GTMKAC 2 cut(s) 528, 656
XspI CTAG 3 cut(s) 57, 195, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.