MD01G1162400.v1.1

peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0017366
Physical Location & Seq
Reverse (-)
26724247 .. 26725944
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1162400.v1.1.491

Sequence Viewer

Length: 957 bp
ATGGCTTCCAATTACCACTTATTCCTACTTATCTTTGTCTTTGCTGCTGCATTTCTTGAATCCAACTGCAAGCTCACTCAAAATTTCTACAAATCCAAATGTCCAAAAGCATTGTCCATTGTGCAAGAAGGAGTTATAGCAGCCATAAAAAACGAAACGCGCATCGGAGCTTCCTTGCTCCGTCTGCATTTCCACGATTGCTTCGTAAATGGTTGTGATGCGTCGGTGCTGTTGGACGATACATCAAGCTTTGTTGGTGAGAAAACAGCAGCTCCTAACAACAACTCCATTAGAGGATTTGAAGTTGTTGATCAAATTAAAGCCAAGCTTGAGAAAGCATGCCCCGGAGTAGTCTCATGTGCTGATCTTCTAGCTCTTGCTGCGCGTGACTCAACAGTTTATTTGGGAGGTCCTTCATGGAAAGTTGGTTTGGGAAGAAGAGATTCAACCACTGCTAGCAGAAGTGCTGCCAACACCTCCATTCCTCCACCAACTTCCAATATAAGTGCTTTAATTTCAAGCTTCTCTGCACAAGGCCTCTCCATAAGGGACTTGGTCGCTCTTTCGGGTTCTCACACAATTGGCCTTGCAAGATGCACATCATTCCGCTCACGCATCTACAACGACTCCGCCATCGACGCCACCTTTGCCCAGTCATTGCAGGGAATTTGCCCAAGAAGCGGAAATGACAACAACCTTGCAAGCCTTGACCTGCAGACCCCAACACATTTTGATAACAAGTACTACAAGAATTTGTTGAAAGAAAAGGGACTTCTTCATTCAGACCAGGAGCTCTTCAACGGAACAACTTCTACTGATAAACTGGTTCAAATTTATGCAAATAACACATTGACATTCTTCAAGCACTTTGCCGTGGCCATGGTCAAAATGGGAAACATCGATCCTCTTACTGGAAGTCAAGGTGAAATCAGAACTAATTGCAGAAAAGTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

319

Amino Acids

34.42

Weight (kDa)

8.81

Isoelectric Point (pI)

32.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 282 4.9e-88 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017366)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25550
malus_domestica MD01G1162100.v1.1 MD01G1162400.v1.1 MD07G1230500.v1.1
prunus_persica Prupe.2G260600_v2.0.a1
pyrus_communis pycom07g20800
rosa_chinensis RchiOBHm_Chr1g0371551
rosa_multiflora Rmu_sc0000948.1_g000034
rosa_roxburghii Rroxscaffold_4G00285560
rosa_rugosa Rorug01G0365300
rosa_samantha Rh1BG338700 Rh1DG369700
rosa_wichuraiana Rw1G033010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 720
AccBSI CCGCTC 1 cut(s) 609
AccII CGCG 2 cut(s) 160, 385
AciI CCGC 3 cut(s) 607, 630, 681
AclWI GGATC 1 cut(s) 896
AcoI YGGCCR 1 cut(s) 876
AcsI RAATTY 4 cut(s) 82, 666, 751, 831
AcyI GRCGYC 1 cut(s) 639
AfaI GTAC 1 cut(s) 743
AfiI CCNNNNNNNGG 2 cut(s) 680, 911
AgsI TTSAA 8 cut(s) 59, 302, 447, 519, 760, 799, 830, 862
AjnI CCWGG 1 cut(s) 786
AjuI GAANNNNNNNTTGG 2 cut(s) 413, 445
AluBI AGCT 8 cut(s) 73, 170, 249, 272, 328, 374, 522, 793
AluI AGCT 8 cut(s) 73, 170, 249, 272, 328, 374, 522, 793
Alw21I GWGCWC 1 cut(s) 795
Alw26I GTCTC 1 cut(s) 358
AlwI GGATC 1 cut(s) 896
AoxI GGCC 3 cut(s) 535, 583, 876
ApeKI GCWGC 6 cut(s) 44, 47, 140, 269, 380, 467
ApoI RAATTY 4 cut(s) 82, 666, 751, 831
ArsI GACNNNNNNTTYG 4 cut(s) 98, 130, 629, 661
Asp700I GAANNNNTTC 2 cut(s) 442, 808
AspLEI GCGC 2 cut(s) 162, 385
AspS9I GGNCC 1 cut(s) 410
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 2 cut(s) 269, 935
AsuNHI GCTAGC 1 cut(s) 455
AvaII GGWCC 1 cut(s) 410
BalI TGGCCA 1 cut(s) 878
BanII GRGCYC 1 cut(s) 795
Bbv12I GWGCWC 1 cut(s) 795
BbvI GCAGC 6 cut(s) 31, 34, 152, 281, 367, 454
BccI CCATC 1 cut(s) 641
BceAI ACGGC 1 cut(s) 857
BciT130I CCWGG 1 cut(s) 788
BclI TGATCA 1 cut(s) 310
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 2 cut(s) 371, 456
BfmI CTRYAG 1 cut(s) 713
BfuAI ACCTGC 1 cut(s) 720
BisI GCNGC 6 cut(s) 45, 48, 141, 270, 381, 468
BlsI GCNGC 6 cut(s) 46, 49, 142, 271, 382, 469
BmcAI AGTACT 1 cut(s) 743
Bme1390I CCNGG 2 cut(s) 345, 788
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 410
BmrFI CCNGG 2 cut(s) 345, 788
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 4 cut(s) 171, 208, 584, 624
BmtI GCTAGC 1 cut(s) 459
BmuI ACTGGG 1 cut(s) 646
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 345
Bsa29I ATCGAT 1 cut(s) 900
BsaBI GATNNNNATC 1 cut(s) 598
BsaHI GRCGYC 1 cut(s) 639
BsaJI CCNNGG 3 cut(s) 343, 873, 879
BsaXI ACNNNNNCTCC 6 cut(s) 256, 269, 286, 299, 611, 641
Bsc4I CCNNNNNNNGG 2 cut(s) 680, 911
Bse1I ACTGG 3 cut(s) 652, 828, 916
Bse3DI GCAATG 1 cut(s) 656
Bse8I GATNNNNATC 1 cut(s) 598
BseBI CCWGG 1 cut(s) 788
BseCI ATCGAT 1 cut(s) 900
BseDI CCNNGG 3 cut(s) 343, 873, 879
BseJI GATNNNNATC 1 cut(s) 598
BseLI CCNNNNNNNGG 2 cut(s) 680, 911
BseMI GCAATG 1 cut(s) 656
BseNI ACTGG 3 cut(s) 652, 828, 916
BseXI GCAGC 6 cut(s) 31, 34, 152, 281, 367, 454
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 2 cut(s) 160, 385
BshFI GGCC 3 cut(s) 537, 585, 878
BshVI ATCGAT 1 cut(s) 900
BsiHKAI GWGCWC 1 cut(s) 795
BsiSI CCGG 1 cut(s) 345
BslFI GGGAC 2 cut(s) 563, 783
BslI CCNNNNNNNGG 2 cut(s) 680, 911
BsmAI GTCTC 1 cut(s) 358
BsmFI GGGAC 2 cut(s) 563, 783
BsnI GGCC 3 cut(s) 537, 585, 878
Bsp1286I GDGCHC 1 cut(s) 795
Bsp143I GATC 3 cut(s) 310, 364, 901
Bsp19I CCATGG 1 cut(s) 879
BspACI CCGC 3 cut(s) 607, 630, 681
BspANI GGCC 3 cut(s) 537, 585, 878
BspDI ATCGAT 1 cut(s) 900
BspFNI CGCG 2 cut(s) 160, 385
BspMAI CTGCAG 1 cut(s) 717
BspMI ACCTGC 1 cut(s) 720
BspOI GCTAGC 1 cut(s) 459
BspPI GGATC 1 cut(s) 896
BspQI GCTCTTC 1 cut(s) 800
BsrBI CCGCTC 1 cut(s) 609
BsrDI GCAATG 1 cut(s) 656
BsrI ACTGG 3 cut(s) 652, 828, 916
BssECI CCNNGG 3 cut(s) 343, 873, 879
BssMI GATC 3 cut(s) 310, 364, 901
BssNI GRCGYC 1 cut(s) 639
BssT1I CCWWGG 1 cut(s) 879
Bst2UI CCWGG 1 cut(s) 788
Bst4CI ACNGT 1 cut(s) 397
Bst6I CTCTTC 2 cut(s) 433, 800
BstACI GRCGYC 1 cut(s) 639
BstC8I GCNNGC 4 cut(s) 71, 340, 457, 703
BstDSI CCRYGG 2 cut(s) 873, 879
BstFNI CGCG 2 cut(s) 160, 385
BstHHI GCGC 2 cut(s) 162, 385
BstKTI GATC 3 cut(s) 313, 367, 904
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 3 cut(s) 310, 364, 901
BstMWI GCNNNNNNNGC 5 cut(s) 184, 380, 638, 647, 678
BstNI CCWGG 1 cut(s) 788
BstNSI RCATGY 1 cut(s) 342
BstSCI CCNGG 2 cut(s) 343, 786
BstSFI CTRYAG 1 cut(s) 713
BstUI CGCG 2 cut(s) 160, 385
BstV1I GCAGC 6 cut(s) 31, 34, 152, 281, 367, 454
Bsu15I ATCGAT 1 cut(s) 900
BsuRI GGCC 3 cut(s) 537, 585, 878
BsuTUI ATCGAT 1 cut(s) 900
BtgI CCRYGG 2 cut(s) 873, 879
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 450
BveI ACCTGC 1 cut(s) 720
Cac8I GCNNGC 4 cut(s) 71, 340, 457, 703
CfoI GCGC 2 cut(s) 162, 385
Cfr13I GGNCC 1 cut(s) 410
ClaI ATCGAT 1 cut(s) 900
CseI GACGC 2 cut(s) 210, 647
Csp6I GTAC 1 cut(s) 742
CviAII CATG 4 cut(s) 339, 357, 417, 880
CviQI GTAC 1 cut(s) 742
DpnI GATC 3 cut(s) 312, 366, 903
DpnII GATC 3 cut(s) 310, 364, 901
EaeI YGGCCR 1 cut(s) 876
Eam1104I CTCTTC 2 cut(s) 433, 800
EarI CTCTTC 2 cut(s) 433, 800
EciI GGCGGA 1 cut(s) 619
Ecl136II GAGCTC 1 cut(s) 793
Eco130I CCWWGG 1 cut(s) 879
Eco147I AGGCCT 1 cut(s) 537
Eco24I GRGCYC 1 cut(s) 795
Eco47I GGWCC 1 cut(s) 410
Eco53kI GAGCTC 1 cut(s) 793
EcoICRI GAGCTC 1 cut(s) 793
EcoO109I RGGNCCY 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 786
EcoT14I CCWWGG 1 cut(s) 879
EcoT38I GRGCYC 1 cut(s) 795
ErhI CCWWGG 1 cut(s) 879
FaeI CATG 4 cut(s) 342, 360, 420, 883
FaiI YATR 9 cut(s) 137, 146, 340, 358, 418, 503, 545, 837, 881
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 2 cut(s) 563, 783
FatI CATG 4 cut(s) 338, 356, 416, 879
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 6 cut(s) 45, 48, 141, 270, 381, 468
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 6 cut(s) 45, 48, 141, 270, 381, 468
FspBI CTAG 2 cut(s) 371, 456
GlaI GCGC 2 cut(s) 161, 384
GluI GCNGC 6 cut(s) 45, 48, 141, 270, 381, 468
HaeIII GGCC 3 cut(s) 537, 585, 878
HapII CCGG 1 cut(s) 345
HgaI GACGC 2 cut(s) 210, 647
HhaI GCGC 2 cut(s) 162, 385
Hin1I GRCGYC 1 cut(s) 639
Hin1II CATG 4 cut(s) 342, 360, 420, 883
Hin6I GCGC 2 cut(s) 160, 383
HinP1I GCGC 2 cut(s) 160, 383
HindIII AAGCTT 3 cut(s) 247, 326, 520
HinfI GANTC 4 cut(s) 59, 389, 443, 626
HpaII CCGG 1 cut(s) 345
HphI GGTGA 2 cut(s) 269, 935
Hpy166II GTNNAC 1 cut(s) 952
Hpy188I TCNGA 3 cut(s) 167, 784, 932
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 952
Hpy99I CGWCG 2 cut(s) 226, 641
HpyAV CCTTC 2 cut(s) 122, 423
HpyCH4III ACNGT 1 cut(s) 397
HpyF10VI GCNNNNNNNGC 5 cut(s) 184, 380, 638, 647, 678
Hsp92I GRCGYC 1 cut(s) 639
Hsp92II CATG 4 cut(s) 342, 360, 420, 883
HspAI GCGC 2 cut(s) 160, 383
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 3 cut(s) 310, 364, 901
LguI GCTCTTC 1 cut(s) 800
LmnI GCTCC 4 cut(s) 167, 183, 277, 790
LpnPI CCDG 8 cut(s) 358, 647, 665, 725, 773, 800, 809, 897
Lsp1109I GCAGC 6 cut(s) 31, 34, 152, 281, 367, 454
LweI GCATC 4 cut(s) 171, 208, 584, 624
MaeI CTAG 2 cut(s) 371, 456
MaeIII GTNAC 1 cut(s) 386
MalI GATC 3 cut(s) 312, 366, 903
MbiI CCGCTC 1 cut(s) 609
MboI GATC 3 cut(s) 310, 364, 901
MboII GAAGA 6 cut(s) 359, 447, 450, 767, 787, 850
MfeI CAATTG 1 cut(s) 579
MhlI GDGCHC 1 cut(s) 795
MlsI TGGCCA 1 cut(s) 878
MluCI AATT 9 cut(s) 10, 82, 315, 513, 579, 666, 751, 831, 937
MluNI TGGCCA 1 cut(s) 878
MlyI GAGTC 2 cut(s) 383, 620
MmeI TCCRAC 2 cut(s) 87, 213
MnlI CCTC 6 cut(s) 287, 401, 487, 495, 548, 915
Mox20I TGGCCA 1 cut(s) 878
MroXI GAANNNNTTC 2 cut(s) 442, 808
MscI TGGCCA 1 cut(s) 878
MseI TTAA 2 cut(s) 318, 512
Msp20I TGGCCA 1 cut(s) 878
MspI CCGG 1 cut(s) 345
MspR9I CCNGG 2 cut(s) 345, 788
MunI CAATTG 1 cut(s) 579
MvaI CCWGG 1 cut(s) 788
MvnI CGCG 2 cut(s) 160, 385
MwoI GCNNNNNNNGC 5 cut(s) 184, 380, 638, 647, 678
NciI CCSGG 1 cut(s) 345
NcoI CCATGG 1 cut(s) 879
NdeII GATC 3 cut(s) 310, 364, 901
NheI GCTAGC 1 cut(s) 455
NlaIII CATG 4 cut(s) 342, 360, 420, 883
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 1 cut(s) 342
PaeI GCATGC 1 cut(s) 342
PceI AGGCCT 1 cut(s) 537
PciSI GCTCTTC 1 cut(s) 800
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PdmI GAANNNNTTC 2 cut(s) 442, 808
PfeI GAWTC 2 cut(s) 59, 443
PflFI GACNNNGTC 1 cut(s) 554
PkrI GCNGC 6 cut(s) 46, 49, 142, 271, 382, 469
PleI GAGTC 2 cut(s) 383, 620
PpsI GAGTC 2 cut(s) 383, 620
PpuMI RGGWCCY 1 cut(s) 410
Psp124BI GAGCTC 1 cut(s) 795
Psp5II RGGWCCY 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 786
PspGI CCWGG 1 cut(s) 786
PspPI GGNCC 1 cut(s) 410
PspPPI RGGWCCY 1 cut(s) 410
PsrI GAACNNNNNNTAC 2 cut(s) 796, 828
PstI CTGCAG 1 cut(s) 717
PsyI GACNNNGTC 1 cut(s) 554
RsaI GTAC 1 cut(s) 743
RsaNI GTAC 1 cut(s) 742
SacI GAGCTC 1 cut(s) 795
SapI GCTCTTC 1 cut(s) 800
SaqAI TTAA 2 cut(s) 318, 512
SatI GCNGC 6 cut(s) 45, 48, 141, 270, 381, 468
Sau3AI GATC 3 cut(s) 310, 364, 901
Sau96I GGNCC 1 cut(s) 410
ScaI AGTACT 1 cut(s) 743
SchI GAGTC 2 cut(s) 383, 620
ScrFI CCNGG 2 cut(s) 345, 788
SduI GDGCHC 1 cut(s) 795
SfaNI GCATC 4 cut(s) 171, 208, 584, 624
SfcI CTRYAG 1 cut(s) 713
SinI GGWCC 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SphI GCATGC 1 cut(s) 342
Sse9I AATT 9 cut(s) 10, 82, 315, 513, 579, 666, 751, 831, 937
SseBI AGGCCT 1 cut(s) 537
SsiI CCGC 3 cut(s) 607, 630, 681
SspMI CTAG 2 cut(s) 371, 456
SstI GAGCTC 1 cut(s) 795
StuI AGGCCT 1 cut(s) 537
StyD4I CCNGG 2 cut(s) 343, 786
StyI CCWWGG 1 cut(s) 879
TaaI ACNGT 1 cut(s) 397
TaqI TCGA 2 cut(s) 636, 900
TasI AATT 9 cut(s) 10, 82, 315, 513, 579, 666, 751, 831, 937
TatI WGTACW 1 cut(s) 741
TfiI GAWTC 2 cut(s) 59, 443
Tru1I TTAA 2 cut(s) 318, 512
Tru9I TTAA 2 cut(s) 318, 512
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 6 cut(s) 44, 47, 140, 269, 380, 467
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 405, 767
TspGWI ACGGA 2 cut(s) 170, 816
TspRI CASTG 1 cut(s) 457
Tth111I GACNNNGTC 1 cut(s) 554
VpaK11BI GGWCC 1 cut(s) 410
XapI RAATTY 4 cut(s) 82, 666, 751, 831
XceI RCATGY 1 cut(s) 342
XcmI CCANNNNNNNNNTGG 2 cut(s) 550, 886
XmnI GAANNNNTTC 2 cut(s) 442, 808
XspI CTAG 2 cut(s) 371, 456
ZrmI AGTACT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.