Rh1BG338700

peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0017366
Physical Location & Seq
Reverse (-)
47266465 .. 47268825
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG338700.1

Sequence Viewer

Length: 954 bp
ATGGCTTCTTACAAATTACTCCTGCTTATCTTGGTCTTTGCTGGTGCATTTATTCAATACATTAATGGCAAGCTATCTCCAAAGTACTACTCATCTAAATGCCCAAATGCATTGTCTATCGTGCAAGGCGAAGTTATCGCAGCAATTAAGAACGAAACACGCATAGGGGCTTCGTTACTCCGCCTGCATTTCCATGATTGCTTTGTAAATGGCTGTGATGCTTCAATACTGCTGGATGATACACCAGGCTTTATTGGTGAGAAAACAGCAGTTCCAAATAACAACTCGGTCAGAGGATTTGAAGTAGTTGATCAGATTAAAGCCAAGCTTGAGAAGGCATGCCCCGGAGTGGTGTCGTGTGCTGATATTCTTGCTCTAGCTGCTCGTGACTCTGTAGTACATTTGGGAGGTCCTTCATGGAACGTTGGTTTGGGAAGAAGAGATTCCACCAGTGCTAGTAGGAGTGCTGCAAACACCTCCATCCCTCCACCCACATCAAATATAAGCAGTCTCCTCTCGAGCTTTGCTGCTCAGGGTCTATCCTCGAGGGATTTAGTCGCACTTGCAGGATCTCACACCATTGGCCTGGCAAGATGCACATCATTCCGAGCACGCATCTACAACGACACCACTATTGATGCCGTCTTTGCCAAGTCATTGCAGAGCAATTGCCCAATAACCGGAAATGATAGCAACCTTGCAAGCCTTGACCTCCAGACCCCAACATATTTTGACAATTTATATTACAAGAATCTGCTGAAAGAAAAGGGTCTTCTTCATTCAGACCAGGAGCTCTTCAACGGAACATCTGCAGCTGCTCTGGTAAAAATATACGCAAGCGACACTTTCAAATTCTTCGAGGACTTTGCCAAGTCCATGGTCAAAATGGGAAATATAAAGCCTCTCACAGGGAGCCAGGGTGAAATCAGAATCAATTGCAGAAAAGTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

317

Amino Acids

34.07

Weight (kDa)

8.83

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 281 4.2e-87 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017366)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25550
malus_domestica MD01G1162100.v1.1 MD01G1162400.v1.1 MD07G1230500.v1.1
prunus_persica Prupe.2G260600_v2.0.a1
pyrus_communis pycom07g20800
rosa_chinensis RchiOBHm_Chr1g0371551
rosa_multiflora Rmu_sc0000948.1_g000034
rosa_roxburghii Rroxscaffold_4G00285560
rosa_rugosa Rorug01G0365300
rosa_samantha Rh1BG338700 Rh1DG369700
rosa_wichuraiana Rw1G033010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 544
AciI CCGC 1 cut(s) 181
AclI AACGTT 1 cut(s) 423
AclWI GGATC 1 cut(s) 577
AcsI RAATTY 1 cut(s) 851
AfaI GTAC 2 cut(s) 86, 399
AfiI CCNNNNNNNGG 3 cut(s) 349, 680, 908
AgsI TTSAA 5 cut(s) 56, 225, 302, 799, 850
AjnI CCWGG 4 cut(s) 244, 585, 786, 915
AjuI GAANNNNNNNTTGG 2 cut(s) 413, 445
AluBI AGCT 6 cut(s) 73, 328, 380, 522, 793, 815
AluI AGCT 6 cut(s) 73, 328, 380, 522, 793, 815
Alw21I GWGCWC 2 cut(s) 613, 795
Alw26I GTCTC 1 cut(s) 515
AlwI GGATC 1 cut(s) 577
Ama87I CYCGRG 2 cut(s) 517, 544
AoxI GGCC 1 cut(s) 583
ApeKI GCWGC 6 cut(s) 140, 380, 467, 527, 812, 815
ApoI RAATTY 1 cut(s) 851
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AseI ATTAAT 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 442
AspS9I GGNCC 1 cut(s) 410
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 2 cut(s) 269, 932
AvaI CYCGRG 2 cut(s) 517, 544
AvaII GGWCC 1 cut(s) 410
BanII GRGCYC 1 cut(s) 795
BauI CACGAG 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 764
Bbv12I GWGCWC 2 cut(s) 613, 795
BbvI GCAGC 6 cut(s) 152, 367, 454, 514, 802, 824
BccI CCATC 1 cut(s) 488
BceAI ACGGC 1 cut(s) 626
BcgI CGANNNNNNTGC 2 cut(s) 848, 882
BciT130I CCWGG 4 cut(s) 246, 587, 788, 917
BclI TGATCA 1 cut(s) 310
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 515
BfaI CTAG 2 cut(s) 377, 456
BfmI CTRYAG 2 cut(s) 393, 810
BisI GCNGC 6 cut(s) 141, 381, 468, 528, 813, 816
BlsI GCNGC 6 cut(s) 142, 382, 469, 529, 814, 817
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 5 cut(s) 246, 345, 587, 788, 917
Bme18I GGWCC 1 cut(s) 410
BmeT110I CYCGRG 2 cut(s) 517, 544
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 1 cut(s) 914
BmrFI CCNGG 5 cut(s) 246, 345, 587, 788, 917
BmsI GCATC 4 cut(s) 208, 584, 624, 628
BpiI GAAGAC 1 cut(s) 764
BpmI CTGGAG 1 cut(s) 698
Bpu10I CCTNAGC 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 345
BsaBI GATNNNNATC 1 cut(s) 598
BsaJI CCNNGG 3 cut(s) 343, 876, 916
BsaWI WCCGGW 1 cut(s) 680
BsaXI ACNNNNNCTCC 2 cut(s) 904, 934
Bsc4I CCNNNNNNNGG 3 cut(s) 349, 680, 908
Bse1I ACTGG 1 cut(s) 450
Bse3DI GCAATG 1 cut(s) 656
Bse8I GATNNNNATC 1 cut(s) 598
BseBI CCWGG 4 cut(s) 246, 587, 788, 917
BseDI CCNNGG 3 cut(s) 343, 876, 916
BseGI GGATG 2 cut(s) 241, 480
BseJI GATNNNNATC 1 cut(s) 598
BseLI CCNNNNNNNGG 3 cut(s) 349, 680, 908
BseMI GCAATG 1 cut(s) 656
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 503
BseXI GCAGC 6 cut(s) 152, 367, 454, 514, 802, 824
BshFI GGCC 1 cut(s) 585
BsiHKAI GWGCWC 2 cut(s) 613, 795
BsiHKCI CYCGRG 2 cut(s) 517, 544
BsiSI CCGG 2 cut(s) 345, 681
BslI CCNNNNNNNGG 3 cut(s) 349, 680, 908
BsmAI GTCTC 1 cut(s) 515
BsnI GGCC 1 cut(s) 585
BsoBI CYCGRG 2 cut(s) 517, 544
Bsp1286I GDGCHC 2 cut(s) 613, 795
Bsp143I GATC 2 cut(s) 310, 569
Bsp19I CCATGG 1 cut(s) 876
BspACI CCGC 1 cut(s) 181
BspANI GGCC 1 cut(s) 585
BspCNI CTCAG 1 cut(s) 544
BspLI GGNNCC 1 cut(s) 914
BspMAI CTGCAG 1 cut(s) 814
BspPI GGATC 1 cut(s) 577
BspQI GCTCTTC 1 cut(s) 800
BsrDI GCAATG 1 cut(s) 656
BsrI ACTGG 1 cut(s) 450
BssECI CCNNGG 3 cut(s) 343, 876, 916
BssMI GATC 2 cut(s) 310, 569
BssSI CACGAG 1 cut(s) 384
BssT1I CCWWGG 1 cut(s) 876
Bst2BI CACGAG 1 cut(s) 384
Bst2UI CCWGG 4 cut(s) 246, 587, 788, 917
Bst6I CTCTTC 2 cut(s) 433, 800
BstC8I GCNNGC 6 cut(s) 71, 185, 340, 613, 703, 838
BstDEI CTNAG 1 cut(s) 531
BstDSI CCRYGG 1 cut(s) 876
BstENI CCTNNNNNAGG 1 cut(s) 906
BstF5I GGATG 2 cut(s) 241, 480
BstKTI GATC 2 cut(s) 313, 572
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 2 cut(s) 310, 569
BstMWI GCNNNNNNNGC 2 cut(s) 380, 647
BstNI CCWGG 4 cut(s) 246, 587, 788, 917
BstNSI RCATGY 1 cut(s) 342
BstSCI CCNGG 5 cut(s) 244, 343, 585, 786, 915
BstSFI CTRYAG 2 cut(s) 393, 810
BstV1I GCAGC 6 cut(s) 152, 367, 454, 514, 802, 824
BstV2I GAAGAC 1 cut(s) 764
BstX2I RGATCY 1 cut(s) 569
BstXI CCANNNNNNTGG 2 cut(s) 586, 877
BstYI RGATCY 1 cut(s) 569
BsuRI GGCC 1 cut(s) 585
BtgI CCRYGG 1 cut(s) 876
BtsCI GGATG 2 cut(s) 241, 480
BtsIMutI CAGTG 1 cut(s) 457
Cac8I GCNNGC 6 cut(s) 71, 185, 340, 613, 703, 838
Cfr13I GGNCC 1 cut(s) 410
Csp6I GTAC 2 cut(s) 85, 398
CviAII CATG 4 cut(s) 194, 339, 417, 877
CviQI GTAC 2 cut(s) 85, 398
DdeI CTNAG 1 cut(s) 531
DpnI GATC 2 cut(s) 312, 571
DpnII GATC 2 cut(s) 310, 569
Eam1104I CTCTTC 2 cut(s) 433, 800
EarI CTCTTC 2 cut(s) 433, 800
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 793
Eco130I CCWWGG 1 cut(s) 876
Eco24I GRGCYC 1 cut(s) 795
Eco47I GGWCC 1 cut(s) 410
Eco53kI GAGCTC 1 cut(s) 793
Eco88I CYCGRG 2 cut(s) 517, 544
EcoICRI GAGCTC 1 cut(s) 793
EcoNI CCTNNNNNAGG 1 cut(s) 906
EcoO109I RGGNCCY 1 cut(s) 410
EcoRII CCWGG 4 cut(s) 244, 585, 786, 915
EcoT14I CCWWGG 1 cut(s) 876
EcoT22I ATGCAT 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 795
ErhI CCWWGG 1 cut(s) 876
FaeI CATG 4 cut(s) 197, 342, 420, 880
FalI AAGNNNNNCTT 4 cut(s) 312, 344, 829, 861
FatI CATG 4 cut(s) 193, 338, 416, 876
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 6 cut(s) 141, 381, 468, 528, 813, 816
FokI GGATG 2 cut(s) 248, 467
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 6 cut(s) 141, 381, 468, 528, 813, 816
FspBI CTAG 2 cut(s) 377, 456
GluI GCNGC 6 cut(s) 141, 381, 468, 528, 813, 816
GsuI CTGGAG 1 cut(s) 698
HaeIII GGCC 1 cut(s) 585
HapII CCGG 2 cut(s) 345, 681
Hin1II CATG 4 cut(s) 197, 342, 420, 880
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 4 cut(s) 389, 443, 751, 930
HpaII CCGG 2 cut(s) 345, 681
HphI GGTGA 2 cut(s) 269, 932
Hpy188I TCNGA 5 cut(s) 293, 315, 608, 784, 929
Hpy188III TCNNGA 3 cut(s) 386, 517, 715
HpyAV CCTTC 2 cut(s) 328, 423
HpyCH4IV ACGT 1 cut(s) 423
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 647
HpyF3I CTNAG 1 cut(s) 531
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 4 cut(s) 197, 342, 420, 880
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 2 cut(s) 310, 569
LguI GCTCTTC 1 cut(s) 800
LmnI GCTCC 2 cut(s) 790, 912
Lsp1109I GCAGC 6 cut(s) 152, 367, 454, 514, 802, 824
LweI GCATC 4 cut(s) 208, 584, 624, 628
MaeI CTAG 2 cut(s) 377, 456
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 174, 386
MalI GATC 2 cut(s) 312, 571
MboI GATC 2 cut(s) 310, 569
MboII GAAGA 6 cut(s) 447, 450, 764, 767, 787, 847
MfeI CAATTG 2 cut(s) 667, 934
MflI RGATCY 1 cut(s) 569
MhlI GDGCHC 2 cut(s) 613, 795
MluCI AATT 7 cut(s) 14, 144, 667, 736, 851, 934, 949
MlyI GAGTC 1 cut(s) 383
Mph1103I ATGCAT 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 442
MseI TTAA 3 cut(s) 63, 147, 318
MslI CAYNNNNRTG 2 cut(s) 97, 192
MspA1I CMGCKG 1 cut(s) 815
MspI CCGG 2 cut(s) 345, 681
MspR9I CCNGG 5 cut(s) 246, 345, 587, 788, 917
MunI CAATTG 2 cut(s) 667, 934
MvaI CCWGG 4 cut(s) 246, 587, 788, 917
MwoI GCNNNNNNNGC 2 cut(s) 380, 647
NciI CCSGG 1 cut(s) 345
NcoI CCATGG 1 cut(s) 876
NdeII GATC 2 cut(s) 310, 569
NlaIII CATG 4 cut(s) 197, 342, 420, 880
NlaIV GGNNCC 1 cut(s) 914
NmuCI GTSAC 1 cut(s) 386
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 1 cut(s) 342
PaeI GCATGC 1 cut(s) 342
PaeR7I CTCGAG 2 cut(s) 517, 544
PciSI GCTCTTC 1 cut(s) 800
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 3 cut(s) 443, 751, 930
PkrI GCNGC 6 cut(s) 142, 382, 469, 529, 814, 817
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
PpuMI RGGWCCY 1 cut(s) 410
PshBI ATTAAT 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 795
Psp1406I AACGTT 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 410
Psp6I CCWGG 4 cut(s) 244, 585, 786, 915
PspGI CCWGG 4 cut(s) 244, 585, 786, 915
PspN4I GGNNCC 1 cut(s) 914
PspPI GGNCC 1 cut(s) 410
PspPPI RGGWCCY 1 cut(s) 410
PspXI VCTCGAGB 1 cut(s) 544
PstI CTGCAG 1 cut(s) 814
PsuI RGATCY 1 cut(s) 569
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 2 cut(s) 86, 399
RsaNI GTAC 2 cut(s) 85, 398
RseI CAYNNNNRTG 2 cut(s) 97, 192
SacI GAGCTC 1 cut(s) 795
SapI GCTCTTC 1 cut(s) 800
SaqAI TTAA 3 cut(s) 63, 147, 318
SatI GCNGC 6 cut(s) 141, 381, 468, 528, 813, 816
Sau3AI GATC 2 cut(s) 310, 569
Sau96I GGNCC 1 cut(s) 410
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 5 cut(s) 246, 345, 587, 788, 917
SduI GDGCHC 2 cut(s) 613, 795
SfaNI GCATC 4 cut(s) 208, 584, 624, 628
SfcI CTRYAG 2 cut(s) 393, 810
Sfr274I CTCGAG 2 cut(s) 517, 544
SinI GGWCC 1 cut(s) 410
SlaI CTCGAG 2 cut(s) 517, 544
SmiMI CAYNNNNRTG 2 cut(s) 97, 192
SmlI CTYRAG 3 cut(s) 329, 517, 544
SmoI CTYRAG 3 cut(s) 329, 517, 544
SphI GCATGC 1 cut(s) 342
Sse9I AATT 7 cut(s) 14, 144, 667, 736, 851, 934, 949
SsiI CCGC 1 cut(s) 181
SspMI CTAG 2 cut(s) 377, 456
SstI GAGCTC 1 cut(s) 795
StyD4I CCNGG 5 cut(s) 244, 343, 585, 786, 915
StyI CCWWGG 1 cut(s) 876
TaiI ACGT 1 cut(s) 426
TaqI TCGA 3 cut(s) 518, 545, 858
TaqII GACCGA 1 cut(s) 277
TasI AATT 7 cut(s) 14, 144, 667, 736, 851, 934, 949
TatI WGTACW 2 cut(s) 84, 397
TfiI GAWTC 3 cut(s) 443, 751, 930
Tru1I TTAA 3 cut(s) 63, 147, 318
Tru9I TTAA 3 cut(s) 63, 147, 318
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 6 cut(s) 140, 380, 467, 527, 812, 815
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 405, 767
TspGWI ACGGA 1 cut(s) 816
TspRI CASTG 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 410
VspI ATTAAT 1 cut(s) 63
XagI CCTNNNNNAGG 1 cut(s) 906
XapI RAATTY 1 cut(s) 851
XceI RCATGY 1 cut(s) 342
XcmI CCANNNNNNNNNTGG 1 cut(s) 883
XhoI CTCGAG 2 cut(s) 517, 544
XmnI GAANNNNTTC 1 cut(s) 442
XspI CTAG 2 cut(s) 377, 456
ZrmI AGTACT 1 cut(s) 86
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.