Prupe.2G260600_v2.0.a1

peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0017366
Physical Location & Seq
Reverse (-)
27016907 .. 27018850
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G260600.1

Sequence Viewer

Length: 1002 bp
ATGTCTCTTCTAAGACTAGCCTACTGCAAGAGAGAAGTGTTTAACATGGCTTCAAATTACAGCTTGCTGCTGCTTTTCTTGGTCTTTGCTGGTACATTTCTTGAAACCAAAGGCAAGCTCACTCCAAAATTCTACTCATCTAAATGCCCAAAAGCACTGTCCATTGTGCAAGAAGAAGTTGTAGCAGCCATAAAAAACGAAACACGCATCGGAGCTTCCTTGCTCCGCCTTCATTTCCATGATTGCTTTGTAAATGGCTGCGATGCGTCGGTGCTGTTGGACGATACATCAAGCTTTGTAGGTGAGAAAACCGCAGCTCCTAATAACAACTCCATCAGAGGATTTGAAGTTGTTGATCACATCAAAGCCAAGCTTGAGAAGGCATGCCCCGGAGTGGTGTCATGTGCTGATCTTCTAGCTCTGGCTGCACGCGACTCTGTAGTTTATTTAGGAGGCCCTTCATGGAAAGTTCGCTTGGGAAGAAGAGATTCTACAACTGCTAGCAGAAGTGCTGCCAACACCTCCATCCCTCCACCAACTTCCAATATAAGCAGTCTCATTTCAAACTTTGCTGCACAAAATCTCTCCTTAAGAGACTTGGTCGCTCTTTCAGGTTCACACACCATTGGCCTGGCAAGATGCACATCATTCCGGTCACGCATCTACAATGAGTCCACCATCGACGCCGCCTTTGCCAATTCATTGCAGGGCAGTTGTCCGAGAAGCGGAAATGATGACAACCTTGCAAATCTTGACCACCAGACCCCAACACATTTTGATAACTTGTATTACAAGAATTTGCTCAAAGTAAAGGGTCTTCTTCATTCAGACCAGGAGCTCTTCAATGGAACTTCTTCTGCAGATAAACTGGTTAAAATATATGCAAACAACACCTTTGCATTCTTCGAGCACTTTGCCAAGGCCATGATCAATATGGGAAACATCGAGCCTCTCACAGGAAGCCAGGGCGAGATAAGAACCAATTGCAGAAAAGTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

334

Amino Acids

36.33

Weight (kDa)

8.9

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017366)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25550
malus_domestica MD01G1162100.v1.1 MD01G1162400.v1.1 MD07G1230500.v1.1
prunus_persica Prupe.2G260600_v2.0.a1
pyrus_communis pycom07g20800
rosa_chinensis RchiOBHm_Chr1g0371551
rosa_multiflora Rmu_sc0000948.1_g000034
rosa_roxburghii Rroxscaffold_4G00285560
rosa_rugosa Rorug01G0365300
rosa_samantha Rh1BG338700 Rh1DG369700
rosa_wichuraiana Rw1G033010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 432
AciI CCGC 4 cut(s) 226, 312, 687, 726
AcsI RAATTY 2 cut(s) 128, 796
AcyI GRCGYC 1 cut(s) 684
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 3 cut(s) 394, 725, 956
AflII CTTAAG 1 cut(s) 589
AgsI TTSAA 5 cut(s) 54, 104, 347, 564, 844
AjnI CCWGG 3 cut(s) 630, 831, 963
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 8 cut(s) 63, 118, 215, 294, 317, 373, 419, 838
AluI AGCT 8 cut(s) 63, 118, 215, 294, 317, 373, 419, 838
Alw21I GWGCWC 2 cut(s) 840, 912
Alw26I GTCTC 3 cut(s) 9, 560, 588
AoxI GGCC 3 cut(s) 454, 628, 921
ApeKI GCWGC 8 cut(s) 67, 70, 185, 258, 314, 425, 512, 572
ApoI RAATTY 2 cut(s) 128, 796
ArsI GACNNNNNNTTYG 4 cut(s) 143, 175, 674, 706
Asp700I GAANNNNTTC 2 cut(s) 487, 853
AspS9I GGNCC 1 cut(s) 455
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 1 cut(s) 314
AsuNHI GCTAGC 1 cut(s) 500
BanII GRGCYC 1 cut(s) 840
BarI GAAGNNNNNNTAC 4 cut(s) 475, 507, 801, 833
BbsI GAAGAC 1 cut(s) 809
Bbv12I GWGCWC 2 cut(s) 840, 912
BbvI GCAGC 8 cut(s) 54, 57, 197, 245, 326, 412, 499, 559
BccI CCATC 3 cut(s) 341, 533, 686
BcgI CGANNNNNNTGC 2 cut(s) 896, 930
BciT130I CCWGG 3 cut(s) 632, 833, 965
BclI TGATCA 2 cut(s) 355, 927
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 3 cut(s) 9, 560, 588
BfaI CTAG 3 cut(s) 17, 416, 501
BfmI CTRYAG 2 cut(s) 438, 858
BfrI CTTAAG 1 cut(s) 589
BisI GCNGC 9 cut(s) 68, 71, 186, 259, 315, 426, 513, 573, 687
BlsI GCNGC 9 cut(s) 69, 72, 187, 260, 316, 427, 514, 574, 688
Bme1390I CCNGG 4 cut(s) 390, 632, 833, 965
BmgT120I GGNCC 1 cut(s) 455
BmrFI CCNGG 4 cut(s) 390, 632, 833, 965
BmsI GCATC 4 cut(s) 216, 253, 629, 669
BmtI GCTAGC 1 cut(s) 504
BpiI GAAGAC 1 cut(s) 809
BpuEI CTTGAG 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 643
BsaHI GRCGYC 1 cut(s) 684
BsaJI CCNNGG 3 cut(s) 388, 918, 964
BsaWI WCCGGW 1 cut(s) 651
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bsc4I CCNNNNNNNGG 3 cut(s) 394, 725, 956
Bse1I ACTGG 1 cut(s) 873
Bse3DI GCAATG 1 cut(s) 701
Bse8I GATNNNNATC 1 cut(s) 643
BseBI CCWGG 3 cut(s) 632, 833, 965
BseDI CCNNGG 3 cut(s) 388, 918, 964
BseGI GGATG 1 cut(s) 525
BseJI GATNNNNATC 1 cut(s) 643
BseLI CCNNNNNNNGG 3 cut(s) 394, 725, 956
BseMI GCAATG 1 cut(s) 701
BseNI ACTGG 1 cut(s) 873
BseXI GCAGC 8 cut(s) 54, 57, 197, 245, 326, 412, 499, 559
BsgI GTGCAG 2 cut(s) 411, 558
Bsh1236I CGCG 1 cut(s) 432
BshFI GGCC 3 cut(s) 456, 630, 923
BsiHKAI GWGCWC 2 cut(s) 840, 912
BsiSI CCGG 2 cut(s) 390, 652
BslI CCNNNNNNNGG 3 cut(s) 394, 725, 956
BsmAI GTCTC 3 cut(s) 9, 560, 588
BsmI GAATGC 1 cut(s) 899
BsnI GGCC 3 cut(s) 456, 630, 923
Bsp1286I GDGCHC 2 cut(s) 840, 912
Bsp143I GATC 3 cut(s) 355, 409, 927
BspACI CCGC 4 cut(s) 226, 312, 687, 726
BspANI GGCC 3 cut(s) 456, 630, 923
BspFNI CGCG 1 cut(s) 432
BspMAI CTGCAG 1 cut(s) 862
BspOI GCTAGC 1 cut(s) 504
BspQI GCTCTTC 1 cut(s) 845
BspTI CTTAAG 1 cut(s) 589
BsrDI GCAATG 1 cut(s) 701
BsrI ACTGG 1 cut(s) 873
BssECI CCNNGG 3 cut(s) 388, 918, 964
BssMI GATC 3 cut(s) 355, 409, 927
BssNI GRCGYC 1 cut(s) 684
BssT1I CCWWGG 1 cut(s) 918
Bst2UI CCWGG 3 cut(s) 632, 833, 965
Bst4CI ACNGT 1 cut(s) 159
Bst6I CTCTTC 3 cut(s) 12, 478, 845
BstACI GRCGYC 1 cut(s) 684
BstAFI CTTAAG 1 cut(s) 589
BstC8I GCNNGC 5 cut(s) 65, 116, 385, 430, 502
BstDEI CTNAG 1 cut(s) 11
BstENI CCTNNNNNAGG 1 cut(s) 954
BstF5I GGATG 1 cut(s) 525
BstFNI CGCG 1 cut(s) 432
BstKTI GATC 3 cut(s) 358, 412, 930
BstMAI GTCTC 3 cut(s) 9, 560, 588
BstMBI GATC 3 cut(s) 355, 409, 927
BstMWI GCNNNNNNNGC 2 cut(s) 425, 692
BstNI CCWGG 3 cut(s) 632, 833, 965
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 4 cut(s) 388, 630, 831, 963
BstSFI CTRYAG 2 cut(s) 438, 858
BstUI CGCG 1 cut(s) 432
BstV1I GCAGC 8 cut(s) 54, 57, 197, 245, 326, 412, 499, 559
BstV2I GAAGAC 1 cut(s) 809
BstXI CCANNNNNNTGG 1 cut(s) 631
BsuRI GGCC 3 cut(s) 456, 630, 923
BtgZI GCGATG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 525
BtsIMutI CAGTG 1 cut(s) 155
Cac8I GCNNGC 5 cut(s) 65, 116, 385, 430, 502
Cfr13I GGNCC 1 cut(s) 455
CseI GACGC 2 cut(s) 255, 692
Csp6I GTAC 1 cut(s) 93
CviAII CATG 6 cut(s) 46, 239, 384, 402, 462, 925
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 1 cut(s) 11
DpnI GATC 3 cut(s) 357, 411, 929
DpnII GATC 3 cut(s) 355, 409, 927
Eam1104I CTCTTC 3 cut(s) 12, 478, 845
EarI CTCTTC 3 cut(s) 12, 478, 845
EciI GGCGGA 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 838
Eco130I CCWWGG 1 cut(s) 918
Eco24I GRGCYC 1 cut(s) 840
Eco53kI GAGCTC 1 cut(s) 838
EcoICRI GAGCTC 1 cut(s) 838
EcoNI CCTNNNNNAGG 1 cut(s) 954
EcoO109I RGGNCCY 1 cut(s) 455
EcoRII CCWGG 3 cut(s) 630, 831, 963
EcoT14I CCWWGG 1 cut(s) 918
EcoT38I GRGCYC 1 cut(s) 840
ErhI CCWWGG 1 cut(s) 918
FaeI CATG 6 cut(s) 49, 242, 387, 405, 465, 928
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FatI CATG 6 cut(s) 45, 238, 383, 401, 461, 924
FbaI TGATCA 2 cut(s) 355, 927
Fnu4HI GCNGC 9 cut(s) 68, 71, 186, 259, 315, 426, 513, 573, 687
FokI GGATG 1 cut(s) 512
FriOI GRGCYC 1 cut(s) 840
Fsp4HI GCNGC 9 cut(s) 68, 71, 186, 259, 315, 426, 513, 573, 687
FspBI CTAG 3 cut(s) 17, 416, 501
GluI GCNGC 9 cut(s) 68, 71, 186, 259, 315, 426, 513, 573, 687
HaeIII GGCC 3 cut(s) 456, 630, 923
HapII CCGG 2 cut(s) 390, 652
HgaI GACGC 2 cut(s) 255, 692
Hin1I GRCGYC 1 cut(s) 684
Hin1II CATG 6 cut(s) 49, 242, 387, 405, 465, 928
HindIII AAGCTT 2 cut(s) 292, 371
HinfI GANTC 3 cut(s) 434, 488, 671
HpaII CCGG 2 cut(s) 390, 652
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 2 cut(s) 617, 675
Hpy188I TCNGA 4 cut(s) 212, 338, 720, 829
Hpy188III TCNNGA 2 cut(s) 101, 752
Hpy8I GTNNAC 2 cut(s) 617, 675
Hpy99I CGWCG 2 cut(s) 271, 686
HpyAV CCTTC 3 cut(s) 239, 373, 468
HpyCH4III ACNGT 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 692
HpyF3I CTNAG 1 cut(s) 11
Hsp92I GRCGYC 1 cut(s) 684
Hsp92II CATG 6 cut(s) 49, 242, 387, 405, 465, 928
Ksp22I TGATCA 2 cut(s) 355, 927
Kzo9I GATC 3 cut(s) 355, 409, 927
LguI GCTCTTC 1 cut(s) 845
LmnI GCTCC 4 cut(s) 212, 228, 322, 835
Lsp1109I GCAGC 8 cut(s) 54, 57, 197, 245, 326, 412, 499, 559
LweI GCATC 4 cut(s) 216, 253, 629, 669
MaeI CTAG 3 cut(s) 17, 416, 501
MaeIII GTNAC 1 cut(s) 654
MalI GATC 3 cut(s) 357, 411, 929
MboI GATC 3 cut(s) 355, 409, 927
MboII GAAGA 9 cut(s) 185, 404, 492, 495, 809, 812, 832, 846, 895
MfeI CAATTG 1 cut(s) 982
MhlI GDGCHC 2 cut(s) 840, 912
MluCI AATT 6 cut(s) 55, 128, 697, 796, 982, 997
MlyI GAGTC 2 cut(s) 428, 680
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 5 cut(s) 332, 446, 532, 540, 960
MroXI GAANNNNTTC 2 cut(s) 487, 853
MseI TTAA 4 cut(s) 42, 590, 873, 1000
MslI CAYNNNNRTG 2 cut(s) 142, 237
MspCI CTTAAG 1 cut(s) 589
MspI CCGG 2 cut(s) 390, 652
MspR9I CCNGG 4 cut(s) 390, 632, 833, 965
MunI CAATTG 1 cut(s) 982
Mva1269I GAATGC 1 cut(s) 899
MvaI CCWGG 3 cut(s) 632, 833, 965
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 2 cut(s) 425, 692
NciI CCSGG 1 cut(s) 390
NdeII GATC 3 cut(s) 355, 409, 927
NheI GCTAGC 1 cut(s) 500
NlaIII CATG 6 cut(s) 49, 242, 387, 405, 465, 928
NmuCI GTSAC 1 cut(s) 654
NspI RCATGY 1 cut(s) 387
PaeI GCATGC 1 cut(s) 387
PciSI GCTCTTC 1 cut(s) 845
PctI GAATGC 1 cut(s) 899
PdmI GAANNNNTTC 2 cut(s) 487, 853
PfeI GAWTC 1 cut(s) 488
PflFI GACNNNGTC 1 cut(s) 599
PkrI GCNGC 9 cut(s) 69, 72, 187, 260, 316, 427, 514, 574, 688
PleI GAGTC 2 cut(s) 428, 679
PpsI GAGTC 2 cut(s) 428, 679
Psp124BI GAGCTC 1 cut(s) 840
Psp6I CCWGG 3 cut(s) 630, 831, 963
PspGI CCWGG 3 cut(s) 630, 831, 963
PspPI GGNCC 1 cut(s) 455
PstI CTGCAG 1 cut(s) 862
PsyI GACNNNGTC 1 cut(s) 599
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
RseI CAYNNNNRTG 2 cut(s) 142, 237
SacI GAGCTC 1 cut(s) 840
SapI GCTCTTC 1 cut(s) 845
SaqAI TTAA 4 cut(s) 42, 590, 873, 1000
SatI GCNGC 9 cut(s) 68, 71, 186, 259, 315, 426, 513, 573, 687
Sau3AI GATC 3 cut(s) 355, 409, 927
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 2 cut(s) 428, 680
ScrFI CCNGG 4 cut(s) 390, 632, 833, 965
SduI GDGCHC 2 cut(s) 840, 912
SfaNI GCATC 4 cut(s) 216, 253, 629, 669
SfcI CTRYAG 2 cut(s) 438, 858
SmiMI CAYNNNNRTG 2 cut(s) 142, 237
SmlI CTYRAG 2 cut(s) 374, 589
SmoI CTYRAG 2 cut(s) 374, 589
SphI GCATGC 1 cut(s) 387
Sse9I AATT 6 cut(s) 55, 128, 697, 796, 982, 997
SsiI CCGC 4 cut(s) 226, 312, 687, 726
SspMI CTAG 3 cut(s) 17, 416, 501
SstI GAGCTC 1 cut(s) 840
StyD4I CCNGG 4 cut(s) 388, 630, 831, 963
StyI CCWWGG 1 cut(s) 918
TaaI ACNGT 1 cut(s) 159
TaqI TCGA 3 cut(s) 681, 906, 945
TasI AATT 6 cut(s) 55, 128, 697, 796, 982, 997
TauI GCSGC 1 cut(s) 689
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 4 cut(s) 42, 590, 873, 1000
Tru9I TTAA 4 cut(s) 42, 590, 873, 1000
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 1 cut(s) 654
TseI GCWGC 8 cut(s) 67, 70, 185, 258, 314, 425, 512, 572
Tsp45I GTSAC 1 cut(s) 654
TspDTI ATGAA 4 cut(s) 221, 450, 690, 812
TspRI CASTG 1 cut(s) 162
Tth111I GACNNNGTC 1 cut(s) 599
Vha464I CTTAAG 1 cut(s) 589
XagI CCTNNNNNAGG 1 cut(s) 954
XapI RAATTY 2 cut(s) 128, 796
XceI RCATGY 1 cut(s) 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 931
XmnI GAANNNNTTC 2 cut(s) 487, 853
XspI CTAG 3 cut(s) 17, 416, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.