pycom07g20800

peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0017366
Physical Location & Seq
Reverse (-)
22773220 .. 22774506
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g20800.2

Sequence Viewer

Length: 957 bp
ATGGCTTCCAGTTACAACTTAGTCCTGCTTATCTTGGTCATTGCTGGTGCATTTCTCGAATCCAATTGCAAGCTCACTAAAAATTTCTACAAATGCAAATGTCCAAAAGCATTGTCCATTGTGCAAGAAGAAGTTATAGCAGCCATAAAAAATGAAACCCGTGTCGGGGCTTCCTTGCTCCGTCTGCATTTCCACGATTGCTTCGTAAATGGTTGCGATGCGTCGGTGCTGTTGGACGACACTTCAAGCTTTGTTGGTGAGAAAACAGCAGTTCCTAACAACAACTCCATTAGAGGATTTGAAGTTGTTGATAGAATTAAAGCTAAGCTTGAGAAAGCATGCCCTGGAGTGGTCTCATGTGCTGATCTTCTAGCTCTGGCTGCCCGTGAATCTACAGTTTATTTAGGAGGTCCTCCATGGAAAGTTCGTTTGGGAAGAAGAGATTCAACCACTGCTAGCAGAAGTGCTGCTAACACCTCCATTCCTCCACCAACTTCCAACATAAGTGCTCTCATTTCAAGCTTCTCAGCACAAGGCCTCTCGTTAAGGGACTTGGTCGCTCTTTCGGGTGCTCATACTATTGGCCGTGCAAGGTGCACATCATTCCGCTCACGTATCTACAACGAATCAACCATCAATGCTGCCTTCGCCAGGTCATTGCAGGGAAGTTGCCCGAGAAGCGGAAGTGACAACAACCTTGCAAGCCTTGACCTCCAGACCCCAACACGTTTTGATAACTTGTACTACAAGAATCTGTTGAAAGAAAAGGGACTTCTTCATTCAGACAATGAGCTCTACAATGGAACTTCTTCTACGGAGAAACTGGTTAAGAAATACGCAAATAACACCTTTGTATTCTTCAAGCACTTTGCCAAGGCCATGGTCAAAATGGGAAACATCCATCTTCTTACAGGAAGTCAAGGCGAAATCAGAACCAATTGCAGAAAAGTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

319

Amino Acids

34.62

Weight (kDa)

9.46

Isoelectric Point (pI)

35.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017366)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25550
malus_domestica MD01G1162100.v1.1 MD01G1162400.v1.1 MD07G1230500.v1.1
prunus_persica Prupe.2G260600_v2.0.a1
pyrus_communis pycom07g20800
rosa_chinensis RchiOBHm_Chr1g0371551
rosa_multiflora Rmu_sc0000948.1_g000034
rosa_roxburghii Rroxscaffold_4G00285560
rosa_rugosa Rorug01G0365300
rosa_samantha Rh1BG338700 Rh1DG369700
rosa_wichuraiana Rw1G033010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 609
AciI CCGC 2 cut(s) 607, 681
AcoI YGGCCR 1 cut(s) 583
AcsI RAATTY 1 cut(s) 82
AfaI GTAC 1 cut(s) 743
AfiI CCNNNNNNNGG 5 cut(s) 165, 166, 349, 651, 680
AflIII ACRYGT 1 cut(s) 725
AgsI TTSAA 6 cut(s) 246, 302, 447, 519, 760, 862
AjnI CCWGG 2 cut(s) 343, 650
AjuI GAANNNNNNNTTGG 2 cut(s) 413, 445
AluBI AGCT 7 cut(s) 73, 249, 323, 328, 374, 522, 793
AluI AGCT 7 cut(s) 73, 249, 323, 328, 374, 522, 793
Alw21I GWGCWC 4 cut(s) 511, 574, 599, 795
Alw26I GTCTC 1 cut(s) 358
Alw44I GTGCAC 1 cut(s) 595
Ama87I CYCGRG 1 cut(s) 673
AoxI GGCC 3 cut(s) 535, 583, 876
ApaLI GTGCAC 1 cut(s) 595
ApeKI GCWGC 4 cut(s) 140, 380, 467, 641
ApoI RAATTY 1 cut(s) 82
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp700I GAANNNNTTC 2 cut(s) 442, 808
AspS9I GGNCC 1 cut(s) 410
AsuHPI GGTGA 1 cut(s) 269
AsuNHI GCTAGC 1 cut(s) 455
AvaI CYCGRG 1 cut(s) 673
AvaII GGWCC 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 599
BanII GRGCYC 1 cut(s) 795
Bbv12I GWGCWC 4 cut(s) 511, 574, 599, 795
BbvI GCAGC 4 cut(s) 152, 367, 454, 628
BccI CCATC 2 cut(s) 641, 909
BceAI ACGGC 1 cut(s) 570
BciT130I CCWGG 2 cut(s) 345, 652
BcoDI GTCTC 1 cut(s) 358
BfaI CTAG 2 cut(s) 371, 456
BfmI CTRYAG 1 cut(s) 393
BisI GCNGC 4 cut(s) 141, 381, 468, 642
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 4 cut(s) 142, 382, 469, 643
Bme1390I CCNGG 2 cut(s) 345, 652
Bme18I GGWCC 1 cut(s) 410
BmeT110I CYCGRG 1 cut(s) 673
BmgT120I GGNCC 1 cut(s) 410
BmrFI CCNGG 2 cut(s) 345, 652
BmsI GCATC 1 cut(s) 208
BmtI GCTAGC 1 cut(s) 459
BpmI CTGGAG 2 cut(s) 366, 698
Bpu1102I GCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 350
BsaAI YACGTR 1 cut(s) 614
BsaI GGTCTC 1 cut(s) 358
BsaJI CCNNGG 4 cut(s) 343, 416, 873, 879
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 5 cut(s) 165, 166, 349, 651, 680
Bse1I ACTGG 2 cut(s) 9, 828
Bse3DI GCAATG 2 cut(s) 39, 656
BseBI CCWGG 2 cut(s) 345, 652
BseDI CCNNGG 4 cut(s) 343, 416, 873, 879
BseGI GGATG 1 cut(s) 897
BseLI CCNNNNNNNGG 5 cut(s) 165, 166, 349, 651, 680
BseMI GCAATG 2 cut(s) 39, 656
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 2 cut(s) 9, 828
BseSI GKGCMC 1 cut(s) 599
BseXI GCAGC 4 cut(s) 152, 367, 454, 628
BshFI GGCC 3 cut(s) 537, 585, 878
BsiHKAI GWGCWC 4 cut(s) 511, 574, 599, 795
BsiHKCI CYCGRG 1 cut(s) 673
BslFI GGGAC 2 cut(s) 563, 783
BslI CCNNNNNNNGG 5 cut(s) 165, 166, 349, 651, 680
BsmAI GTCTC 1 cut(s) 358
BsmFI GGGAC 2 cut(s) 563, 783
BsnI GGCC 3 cut(s) 537, 585, 878
Bso31I GGTCTC 1 cut(s) 358
BsoBI CYCGRG 1 cut(s) 673
Bsp1286I GDGCHC 4 cut(s) 511, 574, 599, 795
Bsp143I GATC 1 cut(s) 364
Bsp1720I GCTNAGC 1 cut(s) 324
Bsp19I CCATGG 2 cut(s) 416, 879
BspACI CCGC 2 cut(s) 607, 681
BspANI GGCC 3 cut(s) 537, 585, 878
BspCNI CTCAG 1 cut(s) 539
BspOI GCTAGC 1 cut(s) 459
BspTNI GGTCTC 1 cut(s) 358
BsrBI CCGCTC 1 cut(s) 609
BsrDI GCAATG 2 cut(s) 39, 656
BsrI ACTGG 2 cut(s) 9, 828
BssECI CCNNGG 4 cut(s) 343, 416, 873, 879
BssMI GATC 1 cut(s) 364
BssT1I CCWWGG 3 cut(s) 416, 873, 879
Bst2UI CCWGG 2 cut(s) 345, 652
Bst4CI ACNGT 1 cut(s) 397
Bst6I CTCTTC 1 cut(s) 433
BstBAI YACGTR 1 cut(s) 614
BstC8I GCNNGC 4 cut(s) 71, 340, 457, 703
BstDEI CTNAG 3 cut(s) 19, 324, 526
BstDSI CCRYGG 2 cut(s) 416, 879
BstENI CCTNNNNNAGG 1 cut(s) 649
BstF5I GGATG 1 cut(s) 897
BstKTI GATC 1 cut(s) 367
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 1 cut(s) 364
BstMWI GCNNNNNNNGC 4 cut(s) 184, 380, 647, 678
BstNI CCWGG 2 cut(s) 345, 652
BstNSI RCATGY 1 cut(s) 342
BstSCI CCNGG 2 cut(s) 343, 650
BstSFI CTRYAG 1 cut(s) 393
BstSLI GKGCMC 1 cut(s) 599
BstV1I GCAGC 4 cut(s) 152, 367, 454, 628
BstXI CCANNNNNNTGG 1 cut(s) 880
BsuRI GGCC 3 cut(s) 537, 585, 878
BtgI CCRYGG 2 cut(s) 416, 879
BtgZI GCGATG 1 cut(s) 231
BtsCI GGATG 1 cut(s) 897
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 4 cut(s) 71, 340, 457, 703
Cfr13I GGNCC 1 cut(s) 410
CseI GACGC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 742
CviAII CATG 4 cut(s) 339, 357, 417, 880
CviQI GTAC 1 cut(s) 742
DdeI CTNAG 3 cut(s) 19, 324, 526
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
EaeI YGGCCR 1 cut(s) 583
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
Ecl136II GAGCTC 1 cut(s) 793
Eco130I CCWWGG 3 cut(s) 416, 873, 879
Eco147I AGGCCT 1 cut(s) 537
Eco24I GRGCYC 1 cut(s) 795
Eco31I GGTCTC 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 410
Eco53kI GAGCTC 1 cut(s) 793
Eco88I CYCGRG 1 cut(s) 673
EcoICRI GAGCTC 1 cut(s) 793
EcoNI CCTNNNNNAGG 1 cut(s) 649
EcoO109I RGGNCCY 1 cut(s) 410
EcoRII CCWGG 2 cut(s) 343, 650
EcoT14I CCWWGG 3 cut(s) 416, 873, 879
EcoT38I GRGCYC 1 cut(s) 795
ErhI CCWWGG 3 cut(s) 416, 873, 879
FaeI CATG 4 cut(s) 342, 360, 420, 883
FaiI YATR 8 cut(s) 137, 146, 340, 358, 418, 503, 576, 881
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 2 cut(s) 563, 783
FatI CATG 4 cut(s) 338, 356, 416, 879
Fnu4HI GCNGC 4 cut(s) 141, 381, 468, 642
FokI GGATG 1 cut(s) 884
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 4 cut(s) 141, 381, 468, 642
FspBI CTAG 2 cut(s) 371, 456
GluI GCNGC 4 cut(s) 141, 381, 468, 642
GsuI CTGGAG 2 cut(s) 366, 698
HaeIII GGCC 3 cut(s) 537, 585, 878
HgaI GACGC 1 cut(s) 210
Hin1II CATG 4 cut(s) 342, 360, 420, 883
HindIII AAGCTT 3 cut(s) 247, 326, 520
HinfI GANTC 5 cut(s) 59, 389, 443, 626, 751
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 597
Hpy188I TCNGA 2 cut(s) 784, 932
Hpy188III TCNNGA 2 cut(s) 56, 715
Hpy8I GTNNAC 1 cut(s) 597
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 655
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 2 cut(s) 613, 727
HpyF10VI GCNNNNNNNGC 4 cut(s) 184, 380, 647, 678
HpyF3I CTNAG 3 cut(s) 19, 324, 526
HpySE526I ACGT 2 cut(s) 613, 727
Hsp92II CATG 4 cut(s) 342, 360, 420, 883
Kzo9I GATC 1 cut(s) 364
LmnI GCTCC 1 cut(s) 183
Lsp1109I GCAGC 4 cut(s) 152, 367, 454, 628
LweI GCATC 1 cut(s) 208
MaeI CTAG 2 cut(s) 371, 456
MaeII ACGT 2 cut(s) 613, 727
MaeIII GTNAC 2 cut(s) 11, 686
MalI GATC 1 cut(s) 366
MbiI CCGCTC 1 cut(s) 609
MboI GATC 1 cut(s) 364
MboII GAAGA 8 cut(s) 140, 359, 447, 450, 767, 801, 850, 896
MfeI CAATTG 2 cut(s) 64, 937
MhlI GDGCHC 4 cut(s) 511, 574, 599, 795
MluCI AATT 5 cut(s) 64, 82, 315, 937, 952
MmeI TCCRAC 2 cut(s) 213, 522
MnlI CCTC 7 cut(s) 287, 401, 423, 487, 495, 548, 722
MroXI GAANNNNTTC 2 cut(s) 442, 808
MseI TTAA 4 cut(s) 318, 545, 828, 955
MspR9I CCNGG 2 cut(s) 345, 652
MunI CAATTG 2 cut(s) 64, 937
MvaI CCWGG 2 cut(s) 345, 652
MwoI GCNNNNNNNGC 4 cut(s) 184, 380, 647, 678
NcoI CCATGG 2 cut(s) 416, 879
NdeII GATC 1 cut(s) 364
NheI GCTAGC 1 cut(s) 455
NlaIII CATG 4 cut(s) 342, 360, 420, 883
NmuCI GTSAC 1 cut(s) 686
NspI RCATGY 1 cut(s) 342
PaeI GCATGC 1 cut(s) 342
PceI AGGCCT 1 cut(s) 537
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PdmI GAANNNNTTC 2 cut(s) 442, 808
PfeI GAWTC 5 cut(s) 59, 389, 443, 626, 751
PflFI GACNNNGTC 1 cut(s) 554
PkrI GCNGC 4 cut(s) 142, 382, 469, 643
Ppu21I YACGTR 1 cut(s) 614
PpuMI RGGWCCY 1 cut(s) 410
Psp124BI GAGCTC 1 cut(s) 795
Psp5II RGGWCCY 1 cut(s) 410
Psp6I CCWGG 2 cut(s) 343, 650
PspGI CCWGG 2 cut(s) 343, 650
PspPI GGNCC 1 cut(s) 410
PspPPI RGGWCCY 1 cut(s) 410
PsrI GAACNNNNNNTAC 2 cut(s) 796, 828
PsyI GACNNNGTC 1 cut(s) 554
RsaI GTAC 1 cut(s) 743
RsaNI GTAC 1 cut(s) 742
SacI GAGCTC 1 cut(s) 795
SaqAI TTAA 4 cut(s) 318, 545, 828, 955
SatI GCNGC 4 cut(s) 141, 381, 468, 642
Sau3AI GATC 1 cut(s) 364
Sau96I GGNCC 1 cut(s) 410
ScrFI CCNGG 2 cut(s) 345, 652
SduI GDGCHC 4 cut(s) 511, 574, 599, 795
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SphI GCATGC 1 cut(s) 342
Sse9I AATT 5 cut(s) 64, 82, 315, 937, 952
SseBI AGGCCT 1 cut(s) 537
SsiI CCGC 2 cut(s) 607, 681
SspMI CTAG 2 cut(s) 371, 456
SstI GAGCTC 1 cut(s) 795
StuI AGGCCT 1 cut(s) 537
StyD4I CCNGG 2 cut(s) 343, 650
StyI CCWWGG 3 cut(s) 416, 873, 879
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 2 cut(s) 616, 730
TaqI TCGA 1 cut(s) 57
TasI AATT 5 cut(s) 64, 82, 315, 937, 952
TatI WGTACW 1 cut(s) 741
TfiI GAWTC 5 cut(s) 59, 389, 443, 626, 751
Tru1I TTAA 4 cut(s) 318, 545, 828, 955
Tru9I TTAA 4 cut(s) 318, 545, 828, 955
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 4 cut(s) 140, 380, 467, 641
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 2 cut(s) 168, 767
TspGWI ACGGA 2 cut(s) 170, 830
TspRI CASTG 1 cut(s) 457
Tth111I GACNNNGTC 1 cut(s) 554
VneI GTGCAC 1 cut(s) 595
VpaK11BI GGWCC 1 cut(s) 410
XagI CCTNNNNNAGG 1 cut(s) 649
XapI RAATTY 1 cut(s) 82
XceI RCATGY 1 cut(s) 342
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XmnI GAANNNNTTC 2 cut(s) 442, 808
XspI CTAG 2 cut(s) 371, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.