MD07G1230500.v1.1

peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0017366
Physical Location & Seq
Reverse (-)
30489128 .. 30490950
1823 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1230500.v1.1.491

Sequence Viewer

Length: 1011 bp
ATGTGTGTCTCTTGTACTAACCTAGCTGCTACTGCTACTGCTAGAGAAAACTGTAACATGGCTTCCAGTTACAACTTAGTCCTGCTTATCTTGGTCTTTGCTGGTGCATTTCTCGAATCCAATTGCAAGCTCACTAAAAATTTCTACAAATCCAAATGTCCAAAAGCATTGTCCATTGTGCAAGAAGAAGTTATAGCAGCCATAAAAAATGAAACCCGTGTCGGGGCTTCCTTGCTCCGTCTGCATTTCCACGATTGCTTCGTAAATGGTTGCGATGCGTCGGTGCTGTTAGACGATACTTCAAACTTTGTTGGTGAGAAAACAGCAGTTCCCAACAACAACTCCATTAGAGGATTTGAAGTTGTTGATGGAATTAAAGCTAAGCTTGAGAAAGCATGCCCTGGAGTGGTCTCCTGTGCTGATCTTCTAGCTCTGGCTGCCCGTGACTCTGTAGTTTATTTAGGGGGTCCTTCATGGAAAGTTCGTTTGGGAAGAAGAGATTCAACCACTGCTAGCAGAAGTGCTGCTAACACCTCCATTCCTCCACCAACTTCCAACATAAGCGCTCTCATTTCAAGCTTCTCAGCACAAGGCCTCTCGTTAAGGGACTTGGTCGCTCTTTCAGGTTCTCATACTATTGGCCTTGCAAGGTGCACATCATTCCGCTCACGTATCTACAATGAATCCACCATCAATGCTGCCTTCGCCAAGTCTTTGCAGGGAAGTTGCCCGAGGAGCGGAAGTGACAACAACCTTGCAAGCCTTGACCTCCAGACCCCAACACATTTTGATAACTTGTACTACAAGAATCTGTTGAAAGAAAAGGGACTTCTTCATTCAGACCAGGAGCTCTACAATGGAACTTCTACGGATAAACTGGTTAAGAAATATGCAAATAACACCTTTGTATTCTTCAAGCATTTTGCCAAGGCTATGGTCAAAATGGGAAACATTGATCCTCTTACAGGAAGTCAAGGCGAAATCAGAACCAATTGCAGAAAAGTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

337

Amino Acids

36.3

Weight (kDa)

9.1

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 60 - 300 2.6e-89 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017366)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25550
malus_domestica MD01G1162100.v1.1 MD01G1162400.v1.1 MD07G1230500.v1.1
prunus_persica Prupe.2G260600_v2.0.a1
pyrus_communis pycom07g20800
rosa_chinensis RchiOBHm_Chr1g0371551
rosa_multiflora Rmu_sc0000948.1_g000034
rosa_roxburghii Rroxscaffold_4G00285560
rosa_rugosa Rorug01G0365300
rosa_samantha Rh1BG338700 Rh1DG369700
rosa_wichuraiana Rw1G033010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 666, 738
AciI CCGC 2 cut(s) 664, 738
AclWI GGATC 1 cut(s) 950
AcsI RAATTY 1 cut(s) 139
AfaI GTAC 2 cut(s) 16, 800
AfeI AGCGCT 1 cut(s) 565
AfiI CCNNNNNNNGG 5 cut(s) 222, 223, 406, 737, 965
AgsI TTSAA 6 cut(s) 303, 359, 504, 576, 817, 916
AjnI CCWGG 2 cut(s) 400, 843
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AluBI AGCT 7 cut(s) 26, 130, 380, 385, 431, 579, 850
AluI AGCT 7 cut(s) 26, 130, 380, 385, 431, 579, 850
Alw21I GWGCWC 2 cut(s) 656, 852
Alw26I GTCTC 2 cut(s) 13, 415
Alw44I GTGCAC 1 cut(s) 652
AlwI GGATC 1 cut(s) 950
Ama87I CYCGRG 1 cut(s) 730
Aor51HI AGCGCT 1 cut(s) 565
AoxI GGCC 2 cut(s) 592, 640
ApaLI GTGCAC 1 cut(s) 652
ApeKI GCWGC 5 cut(s) 26, 197, 437, 524, 698
ApoI RAATTY 1 cut(s) 139
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
Asp700I GAANNNNTTC 1 cut(s) 499
AspLEI GCGC 1 cut(s) 566
AspS9I GGNCC 1 cut(s) 467
AsuHPI GGTGA 1 cut(s) 326
AsuNHI GCTAGC 1 cut(s) 512
AvaI CYCGRG 1 cut(s) 730
AvaII GGWCC 1 cut(s) 467
BaeGI GKGCMC 1 cut(s) 656
BanII GRGCYC 1 cut(s) 852
BarI GAAGNNNNNNTAC 2 cut(s) 46, 78
Bbv12I GWGCWC 2 cut(s) 656, 852
BbvI GCAGC 5 cut(s) 13, 209, 424, 511, 685
BccI CCATC 2 cut(s) 362, 698
BciT130I CCWGG 2 cut(s) 402, 845
BcoDI GTCTC 2 cut(s) 13, 415
BfaI CTAG 4 cut(s) 23, 42, 428, 513
BfmI CTRYAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 567
BisI GCNGC 5 cut(s) 27, 198, 438, 525, 699
BlpI GCTNAGC 1 cut(s) 381
BlsI GCNGC 5 cut(s) 28, 199, 439, 526, 700
Bme1390I CCNGG 2 cut(s) 402, 845
Bme18I GGWCC 1 cut(s) 467
BmeT110I CYCGRG 1 cut(s) 730
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 2 cut(s) 402, 845
BmsI GCATC 1 cut(s) 265
BmtI GCTAGC 1 cut(s) 516
BpmI CTGGAG 2 cut(s) 423, 755
Bpu1102I GCTNAGC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 407
BsaAI YACGTR 1 cut(s) 671
BsaI GGTCTC 1 cut(s) 415
BsaJI CCNNGG 3 cut(s) 400, 731, 927
BsaXI ACNNNNNCTCC 4 cut(s) 326, 356, 727, 757
Bsc4I CCNNNNNNNGG 5 cut(s) 222, 223, 406, 737, 965
Bse1I ACTGG 2 cut(s) 66, 882
BseBI CCWGG 2 cut(s) 402, 845
BseDI CCNNGG 3 cut(s) 400, 731, 927
BseLI CCNNNNNNNGG 5 cut(s) 222, 223, 406, 737, 965
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 2 cut(s) 66, 882
BseRI GAGGAG 1 cut(s) 748
BseSI GKGCMC 1 cut(s) 656
BseXI GCAGC 5 cut(s) 13, 209, 424, 511, 685
BshFI GGCC 2 cut(s) 594, 642
BsiHKAI GWGCWC 2 cut(s) 656, 852
BsiHKCI CYCGRG 1 cut(s) 730
BslFI GGGAC 2 cut(s) 620, 840
BslI CCNNNNNNNGG 5 cut(s) 222, 223, 406, 737, 965
BsmAI GTCTC 2 cut(s) 13, 415
BsmFI GGGAC 2 cut(s) 620, 840
BsnI GGCC 2 cut(s) 594, 642
Bso31I GGTCTC 1 cut(s) 415
BsoBI CYCGRG 1 cut(s) 730
Bsp1286I GDGCHC 2 cut(s) 656, 852
Bsp143I GATC 2 cut(s) 421, 955
Bsp1720I GCTNAGC 1 cut(s) 381
BspACI CCGC 2 cut(s) 664, 738
BspANI GGCC 2 cut(s) 594, 642
BspCNI CTCAG 1 cut(s) 596
BspLI GGNNCC 1 cut(s) 468
BspOI GCTAGC 1 cut(s) 516
BspPI GGATC 1 cut(s) 950
BspTNI GGTCTC 1 cut(s) 415
BsrBI CCGCTC 2 cut(s) 666, 738
BsrI ACTGG 2 cut(s) 66, 882
BssECI CCNNGG 3 cut(s) 400, 731, 927
BssMI GATC 2 cut(s) 421, 955
BssT1I CCWWGG 1 cut(s) 927
Bst2UI CCWGG 2 cut(s) 402, 845
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 490
BstBAI YACGTR 1 cut(s) 671
BstC8I GCNNGC 4 cut(s) 128, 397, 514, 760
BstDEI CTNAG 3 cut(s) 76, 381, 583
BstENI CCTNNNNNAGG 1 cut(s) 963
BstH2I RGCGCY 1 cut(s) 567
BstHHI GCGC 1 cut(s) 566
BstKTI GATC 2 cut(s) 424, 958
BstMAI GTCTC 2 cut(s) 13, 415
BstMBI GATC 2 cut(s) 421, 955
BstMWI GCNNNNNNNGC 5 cut(s) 32, 241, 437, 704, 735
BstNI CCWGG 2 cut(s) 402, 845
BstNSI RCATGY 1 cut(s) 399
BstSCI CCNGG 2 cut(s) 400, 843
BstSFI CTRYAG 1 cut(s) 450
BstSLI GKGCMC 1 cut(s) 656
BstV1I GCAGC 5 cut(s) 13, 209, 424, 511, 685
BstXI CCANNNNNNTGG 1 cut(s) 934
BsuRI GGCC 2 cut(s) 594, 642
BtgZI GCGATG 1 cut(s) 288
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 1 cut(s) 507
Cac8I GCNNGC 4 cut(s) 128, 397, 514, 760
CfoI GCGC 1 cut(s) 566
Cfr13I GGNCC 1 cut(s) 467
CseI GACGC 1 cut(s) 267
Csp6I GTAC 2 cut(s) 15, 799
CviAII CATG 3 cut(s) 58, 396, 474
CviQI GTAC 2 cut(s) 15, 799
DdeI CTNAG 3 cut(s) 76, 381, 583
DpnI GATC 2 cut(s) 423, 957
DpnII GATC 2 cut(s) 421, 955
Eam1104I CTCTTC 1 cut(s) 490
EarI CTCTTC 1 cut(s) 490
Ecl136II GAGCTC 1 cut(s) 850
Eco130I CCWWGG 1 cut(s) 927
Eco147I AGGCCT 1 cut(s) 594
Eco24I GRGCYC 1 cut(s) 852
Eco31I GGTCTC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 467
Eco47III AGCGCT 1 cut(s) 565
Eco53kI GAGCTC 1 cut(s) 850
Eco88I CYCGRG 1 cut(s) 730
EcoICRI GAGCTC 1 cut(s) 850
EcoNI CCTNNNNNAGG 1 cut(s) 963
EcoO109I RGGNCCY 1 cut(s) 467
EcoRII CCWGG 2 cut(s) 400, 843
EcoT14I CCWWGG 1 cut(s) 927
EcoT38I GRGCYC 1 cut(s) 852
ErhI CCWWGG 1 cut(s) 927
FaeI CATG 3 cut(s) 61, 399, 477
FaiI YATR 9 cut(s) 59, 194, 203, 397, 475, 560, 633, 891, 935
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 2 cut(s) 620, 840
FatI CATG 3 cut(s) 57, 395, 473
Fnu4HI GCNGC 5 cut(s) 27, 198, 438, 525, 699
FriOI GRGCYC 1 cut(s) 852
Fsp4HI GCNGC 5 cut(s) 27, 198, 438, 525, 699
FspBI CTAG 4 cut(s) 23, 42, 428, 513
GlaI GCGC 1 cut(s) 565
GluI GCNGC 5 cut(s) 27, 198, 438, 525, 699
GsuI CTGGAG 2 cut(s) 423, 755
HaeII RGCGCY 1 cut(s) 567
HaeIII GGCC 2 cut(s) 594, 642
HgaI GACGC 1 cut(s) 267
HhaI GCGC 1 cut(s) 566
Hin1II CATG 3 cut(s) 61, 399, 477
Hin6I GCGC 1 cut(s) 564
HinP1I GCGC 1 cut(s) 564
HindIII AAGCTT 2 cut(s) 383, 577
HinfI GANTC 5 cut(s) 116, 446, 500, 683, 808
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 654
Hpy188I TCNGA 2 cut(s) 841, 986
Hpy188III TCNNGA 2 cut(s) 113, 772
Hpy8I GTNNAC 1 cut(s) 654
Hpy99I CGWCG 1 cut(s) 283
HpyAV CCTTC 2 cut(s) 480, 712
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 670
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 241, 437, 704, 735
HpyF3I CTNAG 3 cut(s) 76, 381, 583
HpySE526I ACGT 1 cut(s) 670
Hsp92II CATG 3 cut(s) 61, 399, 477
HspAI GCGC 1 cut(s) 564
Kzo9I GATC 2 cut(s) 421, 955
LmnI GCTCC 3 cut(s) 240, 735, 847
Lsp1109I GCAGC 5 cut(s) 13, 209, 424, 511, 685
LweI GCATC 1 cut(s) 265
MaeI CTAG 4 cut(s) 23, 42, 428, 513
MaeII ACGT 1 cut(s) 670
MaeIII GTNAC 4 cut(s) 53, 68, 443, 743
MalI GATC 2 cut(s) 423, 957
MbiI CCGCTC 2 cut(s) 666, 738
MboI GATC 2 cut(s) 421, 955
MboII GAAGA 6 cut(s) 197, 416, 504, 507, 824, 904
MfeI CAATTG 2 cut(s) 121, 991
MhlI GDGCHC 2 cut(s) 656, 852
MluCI AATT 5 cut(s) 121, 139, 372, 991, 1006
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 579
MnlI CCTC 7 cut(s) 344, 544, 552, 605, 726, 779, 969
MroXI GAANNNNTTC 1 cut(s) 499
MseI TTAA 4 cut(s) 375, 602, 882, 1009
MspR9I CCNGG 2 cut(s) 402, 845
MunI CAATTG 2 cut(s) 121, 991
MvaI CCWGG 2 cut(s) 402, 845
MwoI GCNNNNNNNGC 5 cut(s) 32, 241, 437, 704, 735
NdeII GATC 2 cut(s) 421, 955
NheI GCTAGC 1 cut(s) 512
NlaIII CATG 3 cut(s) 61, 399, 477
NlaIV GGNNCC 1 cut(s) 468
NmuCI GTSAC 2 cut(s) 443, 743
NspI RCATGY 1 cut(s) 399
PaeI GCATGC 1 cut(s) 399
PceI AGGCCT 1 cut(s) 594
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 499
PfeI GAWTC 4 cut(s) 116, 500, 683, 808
PflFI GACNNNGTC 1 cut(s) 611
PkrI GCNGC 5 cut(s) 28, 199, 439, 526, 700
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
Ppu21I YACGTR 1 cut(s) 671
PpuMI RGGWCCY 1 cut(s) 467
Psp124BI GAGCTC 1 cut(s) 852
Psp5II RGGWCCY 1 cut(s) 467
Psp6I CCWGG 2 cut(s) 400, 843
PspGI CCWGG 2 cut(s) 400, 843
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 1 cut(s) 467
PspPPI RGGWCCY 1 cut(s) 467
PsyI GACNNNGTC 1 cut(s) 611
RsaI GTAC 2 cut(s) 16, 800
RsaNI GTAC 2 cut(s) 15, 799
SacI GAGCTC 1 cut(s) 852
SaqAI TTAA 4 cut(s) 375, 602, 882, 1009
SatI GCNGC 5 cut(s) 27, 198, 438, 525, 699
Sau3AI GATC 2 cut(s) 421, 955
Sau96I GGNCC 1 cut(s) 467
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 2 cut(s) 402, 845
SduI GDGCHC 2 cut(s) 656, 852
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 450
SinI GGWCC 1 cut(s) 467
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
SphI GCATGC 1 cut(s) 399
Sse9I AATT 5 cut(s) 121, 139, 372, 991, 1006
SseBI AGGCCT 1 cut(s) 594
SsiI CCGC 2 cut(s) 664, 738
SspMI CTAG 4 cut(s) 23, 42, 428, 513
SstI GAGCTC 1 cut(s) 852
StuI AGGCCT 1 cut(s) 594
StyD4I CCNGG 2 cut(s) 400, 843
StyI CCWWGG 1 cut(s) 927
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 673
TaqI TCGA 1 cut(s) 114
TasI AATT 5 cut(s) 121, 139, 372, 991, 1006
TatI WGTACW 2 cut(s) 14, 798
TfiI GAWTC 4 cut(s) 116, 500, 683, 808
Tru1I TTAA 4 cut(s) 375, 602, 882, 1009
Tru9I TTAA 4 cut(s) 375, 602, 882, 1009
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 2 cut(s) 443, 743
TseI GCWGC 5 cut(s) 26, 197, 437, 524, 698
Tsp45I GTSAC 2 cut(s) 443, 743
TspDTI ATGAA 4 cut(s) 225, 462, 696, 824
TspGWI ACGGA 2 cut(s) 227, 884
TspRI CASTG 1 cut(s) 514
Tth111I GACNNNGTC 1 cut(s) 611
VneI GTGCAC 1 cut(s) 652
VpaK11BI GGWCC 1 cut(s) 467
XagI CCTNNNNNAGG 1 cut(s) 963
XapI RAATTY 1 cut(s) 139
XceI RCATGY 1 cut(s) 399
XmnI GAANNNNTTC 1 cut(s) 499
XspI CTAG 4 cut(s) 23, 42, 428, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.