FvH4_7g25940

U-box domain-containing protein 62-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
19732137 .. 19736389
4253 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25940.t3

Sequence Viewer

Length: 1302 bp
ATGTCCGCCGATGAACCGGGCCTCAGCTCGCAGCAGCTAGTCTTCCACCAAGACGACACCTTGCGGTTCGGGGCACCGCCTCCGCGCCGGGTCGGGGACTCGGGTCCCAAGACCCGAGAGCTCAGCGGCTTCATCGACGATCGGTTCTTCCCGCCGCAAGGCACCGACTTCCGGGGGAGGTTGTATAGCGAGAATCCGGCGCGGCGGGACCCGCCGGAGCCCCGGAACTGGAATCCGAATGTGGCCGCCGTGAGAACGCCGAGCGGGGAAGGATCGGAAGACGATGAGGATGAGGACGAGGATGACGACGATGATGACGGCGACGTCGGAGGGTTGTTCGGGGCGGAGAATCGGAGCAAGGGCAATGGTGGTAATAATGGGAGTAATGGGGAGGACAAAATGGGAAACGGAAATGTTAAGCACCAGCAGCTCCATTCTTCTTTTGGTGGGGCTCTGATATTAGGATCAAGTAGAGAGGCGTTGGAGAAGGAACATAGTGTTAGTGTAGGGCAGCAGACGGTGAATAACAACACTAGGGATAGTCCCAGTAATAATCATCAGTTGCCGGGAAGGCTTGGGAGTTATCAGAATGCAGTCACCGTGGCTGAATCATCGGATGGGGACATGTACTACTCGCAGTATTTGCAAGGTCCGGAGGGCTCTGCCGCTGCTCAGAAGGATACGGTTGTAGAAAATGGTTGTGGATTTAGTGGAAGAAAGGATGCTTTGTGTTCAAGCGAGTCTGGAGACTCTTTGAGGGCGATTCTCTCTGATCCTGTGACGGGAGCTCTGATGGATGACGCTATGATATTGCCTTGTGGGCATTCTTTTGGAGGTGTTGGAGTACAACAAGTTATTAGAATGAAAGCTTGCTTCACTTGTTCTCAGTCAATTTCAGAAGATTCAATTGCTCCAAATCTCTCTCTTCGAAGTGCTGTGCAGGCATTCCGTCGTGAAGAAGAGTTACACTTTTACCACTCATCCAAAAGGAAAAGAGAAAGGTTTGACCAGGACAAGGGTGGTTATGGTGATTTAGCACTCACAGATCCTCCTAGGGGTAGAGGTGTTCAGTTTCCATTTGCTGTGACAGACCGAGTTATTATAAAGGGAAATAAGAGGACACCACAACGCTTTGTTGGGCGTGAGGCAGTTGTGACAACACAATGCTTAAATGGATGGTATGTGGTAAAGACATTGGATAATGCTGAGAGTGTAAAGTTGCAGTATCGCTCACTTGCCAAGGTATCAGATGATTCATCATCCAAGGCACTGCCAAGCAAGATGGCACCTAACTGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

434

Amino Acids

47.03

Weight (kDa)

5.15

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1103
AasI GACNNNNNNGTC 1 cut(s) 323
AatII GACGTC 1 cut(s) 327
AccB1I GGYRCC 3 cut(s) 73, 161, 1285
AccBSI CCGCTC 1 cut(s) 264
AccII CGCG 2 cut(s) 85, 202
AccIII TCCGGA 1 cut(s) 652
AclWI GGATC 4 cut(s) 280, 472, 767, 1040
AcoI YGGCCR 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 2 cut(s) 629, 846
AfiI CCNNNNNNNGG 7 cut(s) 94, 158, 171, 228, 782, 1015, 1055
AflIII ACRYGT 1 cut(s) 624
AgsI TTSAA 2 cut(s) 735, 906
AjnI CCWGG 1 cut(s) 1008
AluBI AGCT 6 cut(s) 27, 37, 121, 430, 788, 869
AluI AGCT 6 cut(s) 27, 37, 121, 430, 788, 869
Alw21I GWGCWC 2 cut(s) 123, 790
Alw26I GTCTC 1 cut(s) 741
AlwI GGATC 4 cut(s) 280, 472, 767, 1040
Ama87I CYCGRG 2 cut(s) 100, 114
Aor13HI TCCGGA 1 cut(s) 652
AoxI GGCC 2 cut(s) 19, 243
ApeKI GCWGC 5 cut(s) 31, 34, 427, 511, 668
AspA2I CCTAGG 1 cut(s) 1052
AspLEI GCGC 2 cut(s) 87, 202
AspS9I GGNCC 4 cut(s) 19, 104, 208, 650
AsuC2I CCSGG 5 cut(s) 18, 89, 173, 223, 567
AsuHPI GGTGA 3 cut(s) 532, 589, 1040
AsuII TTCGAA 1 cut(s) 928
AvaI CYCGRG 2 cut(s) 100, 114
AvaII GGWCC 3 cut(s) 104, 208, 650
AvrII CCTAGG 1 cut(s) 1052
BaeGI GKGCMC 1 cut(s) 76
BaeI ACNNNNGTAYC 2 cut(s) 672, 705
BanI GGYRCC 3 cut(s) 73, 161, 1285
BanII GRGCYC 5 cut(s) 123, 222, 454, 662, 790
BarI GAAGNNNNNNTAC 2 cut(s) 948, 980
BbsI GAAGAC 2 cut(s) 34, 285
Bbv12I GWGCWC 2 cut(s) 123, 790
BbvCI CCTCAGC 1 cut(s) 23
BbvI GCAGC 5 cut(s) 43, 46, 439, 523, 655
BccI CCATC 4 cut(s) 611, 787, 1170, 1276
BceAI ACGGC 2 cut(s) 233, 334
BciT130I CCWGG 1 cut(s) 1010
BciVI GTATCC 1 cut(s) 673
BcnI CCSGG 5 cut(s) 18, 89, 173, 223, 567
BcoDI GTCTC 1 cut(s) 741
BfaI CTAG 3 cut(s) 38, 534, 1053
BfuI GTATCC 1 cut(s) 673
BglI GCCNNNNNGGC 2 cut(s) 571, 820
BlnI CCTAGG 1 cut(s) 1052
BlpI GCTNAGC 1 cut(s) 122
Bme1390I CCNGG 6 cut(s) 18, 89, 173, 223, 567, 1010
Bme18I GGWCC 3 cut(s) 104, 208, 650
BmeT110I CYCGRG 2 cut(s) 100, 114
BmgT120I GGNCC 4 cut(s) 19, 104, 208, 650
BmiI GGNNCC 8 cut(s) 75, 105, 106, 163, 209, 210, 219, 1287
BmrFI CCNGG 6 cut(s) 18, 89, 173, 223, 567, 1010
BmrI ACTGGG 1 cut(s) 540
BmsI GCATC 1 cut(s) 712
BmuI ACTGGG 1 cut(s) 540
BoxI GACNNNNGTC 1 cut(s) 102
BpiI GAAGAC 2 cut(s) 34, 285
BpmI CTGGAG 1 cut(s) 765
Bpu10I CCTNAGC 1 cut(s) 23
Bpu1102I GCTNAGC 1 cut(s) 122
Bpu14I TTCGAA 1 cut(s) 928
BpuMI CCSGG 5 cut(s) 18, 89, 173, 223, 567
BsaHI GRCGYC 1 cut(s) 324
BsaJI CCNNGG 6 cut(s) 172, 221, 600, 1052, 1239, 1263
BsaWI WCCGGW 1 cut(s) 652
BsaXI ACNNNNNCTCC 2 cut(s) 1033, 1063
Bsc4I CCNNNNNNNGG 7 cut(s) 94, 158, 171, 228, 782, 1015, 1055
Bse1I ACTGG 3 cut(s) 233, 546, 1298
Bse3DI GCAATG 1 cut(s) 370
BseAI TCCGGA 1 cut(s) 652
BseBI CCWGG 1 cut(s) 1010
BseDI CCNNGG 6 cut(s) 172, 221, 600, 1052, 1239, 1263
BseGI GGATG 8 cut(s) 295, 307, 622, 727, 802, 980, 1181, 1259
BseLI CCNNNNNNNGG 7 cut(s) 94, 158, 171, 228, 782, 1015, 1055
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 5 cut(s) 37, 136, 686, 899, 1197
BseNI ACTGG 3 cut(s) 233, 546, 1298
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 5 cut(s) 43, 46, 439, 523, 655
BsgI GTGCAG 1 cut(s) 959
Bsh1236I CGCG 2 cut(s) 85, 202
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 2 cut(s) 21, 245
BshNI GGYRCC 3 cut(s) 73, 161, 1285
BsiEI CGRYCG 1 cut(s) 142
BsiHKAI GWGCWC 2 cut(s) 123, 790
BsiHKCI CYCGRG 2 cut(s) 100, 114
BsiSI CCGG 8 cut(s) 17, 88, 172, 197, 215, 223, 566, 653
BslFI GGGAC 5 cut(s) 90, 110, 221, 528, 635
BslI CCNNNNNNNGG 7 cut(s) 94, 158, 171, 228, 782, 1015, 1055
BsmAI GTCTC 1 cut(s) 741
BsmFI GGGAC 5 cut(s) 90, 110, 221, 528, 635
BsmI GAATGC 3 cut(s) 595, 823, 944
BsnI GGCC 2 cut(s) 21, 245
BsoBI CYCGRG 2 cut(s) 100, 114
Bsp119I TTCGAA 1 cut(s) 928
Bsp1286I GDGCHC 6 cut(s) 76, 123, 222, 454, 662, 790
Bsp13I TCCGGA 1 cut(s) 652
Bsp143I GATC 5 cut(s) 139, 272, 464, 772, 1045
Bsp1720I GCTNAGC 1 cut(s) 122
BspANI GGCC 2 cut(s) 21, 245
BspCNI CTCAG 5 cut(s) 36, 135, 685, 898, 1198
BspEI TCCGGA 1 cut(s) 652
BspFNI CGCG 2 cut(s) 85, 202
BspLI GGNNCC 8 cut(s) 75, 105, 106, 163, 209, 210, 219, 1287
BspPI GGATC 4 cut(s) 280, 472, 767, 1040
BspT104I TTCGAA 1 cut(s) 928
BspT107I GGYRCC 3 cut(s) 73, 161, 1285
BsrBI CCGCTC 1 cut(s) 264
BsrDI GCAATG 1 cut(s) 370
BsrI ACTGG 3 cut(s) 233, 546, 1298
BssECI CCNNGG 6 cut(s) 172, 221, 600, 1052, 1239, 1263
BssMI GATC 5 cut(s) 139, 272, 464, 772, 1045
BssNI GRCGYC 1 cut(s) 324
BssT1I CCWWGG 3 cut(s) 1052, 1239, 1263
Bst2UI CCWGG 1 cut(s) 1010
Bst4CI ACNGT 3 cut(s) 520, 601, 685
Bst6I CTCTTC 2 cut(s) 930, 954
BstACI GRCGYC 1 cut(s) 324
BstAPI GCANNNNNTGC 1 cut(s) 643
BstBI TTCGAA 1 cut(s) 928
BstC8I GCNNGC 3 cut(s) 29, 871, 942
BstDEI CTNAG 5 cut(s) 23, 122, 672, 885, 1206
BstDSI CCRYGG 1 cut(s) 600
BstF5I GGATG 8 cut(s) 295, 307, 622, 727, 802, 980, 1181, 1259
BstFNI CGCG 2 cut(s) 85, 202
BstHHI GCGC 2 cut(s) 87, 202
BstKTI GATC 5 cut(s) 142, 275, 467, 775, 1048
BstMAI GTCTC 1 cut(s) 741
BstMBI GATC 5 cut(s) 139, 272, 464, 772, 1045
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 6 cut(s) 211, 427, 571, 643, 820, 941
BstNI CCWGG 1 cut(s) 1010
BstNSI RCATGY 1 cut(s) 628
BstPAI GACNNNNGTC 1 cut(s) 102
BstSCI CCNGG 6 cut(s) 16, 87, 171, 221, 565, 1008
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 2 cut(s) 85, 202
BstV1I GCAGC 5 cut(s) 43, 46, 439, 523, 655
BstV2I GAAGAC 2 cut(s) 34, 285
BstX2I RGATCY 1 cut(s) 1045
BstYI RGATCY 1 cut(s) 1045
BsuI GTATCC 1 cut(s) 673
BsuRI GGCC 2 cut(s) 21, 245
BtgI CCRYGG 1 cut(s) 600
BtsCI GGATG 8 cut(s) 295, 307, 622, 727, 802, 980, 1181, 1259
BtsI GCAGTG 1 cut(s) 1268
BtsIMutI CAGTG 1 cut(s) 1268
Cac8I GCNNGC 3 cut(s) 29, 871, 942
CfoI GCGC 2 cut(s) 87, 202
Cfr13I GGNCC 4 cut(s) 19, 104, 208, 650
CseI GACGC 1 cut(s) 809
Csp6I GTAC 2 cut(s) 628, 845
CviAII CATG 1 cut(s) 625
CviQI GTAC 2 cut(s) 628, 845
DdeI CTNAG 5 cut(s) 23, 122, 672, 885, 1206
DpnI GATC 5 cut(s) 141, 274, 466, 774, 1047
DpnII GATC 5 cut(s) 139, 272, 464, 772, 1045
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 930, 954
EarI CTCTTC 2 cut(s) 930, 954
EciI GGCGGA 1 cut(s) 359
Ecl136II GAGCTC 2 cut(s) 121, 788
Eco130I CCWWGG 3 cut(s) 1052, 1239, 1263
Eco24I GRGCYC 5 cut(s) 123, 222, 454, 662, 790
Eco47I GGWCC 3 cut(s) 104, 208, 650
Eco53kI GAGCTC 2 cut(s) 121, 788
Eco88I CYCGRG 2 cut(s) 100, 114
EcoICRI GAGCTC 2 cut(s) 121, 788
EcoO109I RGGNCCY 2 cut(s) 104, 208
EcoRII CCWGG 1 cut(s) 1008
EcoT14I CCWWGG 3 cut(s) 1052, 1239, 1263
EcoT38I GRGCYC 5 cut(s) 123, 222, 454, 662, 790
ErhI CCWWGG 3 cut(s) 1052, 1239, 1263
FaeI CATG 1 cut(s) 628
FaiI YATR 7 cut(s) 186, 495, 626, 806, 1026, 1103, 1182
FaqI GGGAC 5 cut(s) 90, 110, 221, 528, 635
FatI CATG 1 cut(s) 624
FauI CCCGC 4 cut(s) 159, 198, 219, 257
FokI GGATG 8 cut(s) 302, 314, 629, 734, 809, 967, 1188, 1246
FriOI GRGCYC 5 cut(s) 123, 222, 454, 662, 790
FspBI CTAG 3 cut(s) 38, 534, 1053
GlaI GCGC 2 cut(s) 86, 201
GsuI CTGGAG 1 cut(s) 765
HaeIII GGCC 2 cut(s) 21, 245
HapII CCGG 8 cut(s) 17, 88, 172, 197, 215, 223, 566, 653
HgaI GACGC 1 cut(s) 809
HhaI GCGC 2 cut(s) 87, 202
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 1 cut(s) 628
Hin6I GCGC 2 cut(s) 85, 200
HinP1I GCGC 2 cut(s) 85, 200
HindIII AAGCTT 1 cut(s) 867
HpaII CCGG 8 cut(s) 17, 88, 172, 197, 215, 223, 566, 653
HphI GGTGA 3 cut(s) 532, 589, 1040
Hpy188III TCNNGA 3 cut(s) 653, 744, 953
Hpy99I CGWCG 5 cut(s) 140, 311, 326, 329, 954
HpyAV CCTTC 4 cut(s) 263, 481, 564, 670
HpyCH4III ACNGT 3 cut(s) 520, 601, 685
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 4 cut(s) 593, 646, 940, 1222
HpyF10VI GCNNNNNNNGC 6 cut(s) 211, 427, 571, 643, 820, 941
HpyF3I CTNAG 5 cut(s) 23, 122, 672, 885, 1206
HpySE526I ACGT 1 cut(s) 324
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 1 cut(s) 628
HspAI GCGC 2 cut(s) 85, 200
KflI GGGWCCC 2 cut(s) 104, 208
Kpn2I TCCGGA 1 cut(s) 652
Kzo9I GATC 5 cut(s) 139, 272, 464, 772, 1045
LmnI GCTCC 5 cut(s) 217, 354, 435, 785, 916
Lsp1109I GCAGC 5 cut(s) 43, 46, 439, 523, 655
LweI GCATC 1 cut(s) 712
MaeI CTAG 3 cut(s) 38, 534, 1053
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 5 cut(s) 595, 778, 963, 1084, 1153
MalI GATC 5 cut(s) 141, 274, 466, 774, 1047
MbiI CCGCTC 1 cut(s) 264
MboI GATC 5 cut(s) 139, 272, 464, 772, 1045
MboII GAAGA 9 cut(s) 34, 139, 290, 429, 726, 911, 917, 968, 971
MfeI CAATTG 1 cut(s) 906
MflI RGATCY 1 cut(s) 1045
MhlI GDGCHC 6 cut(s) 76, 123, 222, 454, 662, 790
MluCI AATT 2 cut(s) 891, 906
MlyI GAGTC 3 cut(s) 92, 743, 749
MmeI TCCRAC 3 cut(s) 307, 462, 820
MroI TCCGGA 1 cut(s) 652
MseI TTAA 2 cut(s) 417, 1169
MspA1I CMGCKG 2 cut(s) 126, 668
MspI CCGG 8 cut(s) 17, 88, 172, 197, 215, 223, 566, 653
MspR9I CCNGG 6 cut(s) 18, 89, 173, 223, 567, 1010
MunI CAATTG 1 cut(s) 906
Mva1269I GAATGC 3 cut(s) 595, 823, 944
MvaI CCWGG 1 cut(s) 1010
MvnI CGCG 2 cut(s) 85, 202
MwoI GCNNNNNNNGC 6 cut(s) 211, 427, 571, 643, 820, 941
NciI CCSGG 5 cut(s) 18, 89, 173, 223, 567
NdeII GATC 5 cut(s) 139, 272, 464, 772, 1045
NlaIII CATG 1 cut(s) 628
NlaIV GGNNCC 8 cut(s) 75, 105, 106, 163, 209, 210, 219, 1287
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 4 cut(s) 595, 778, 1084, 1153
NspI RCATGY 1 cut(s) 628
NspV TTCGAA 1 cut(s) 928
PciI ACATGT 1 cut(s) 624
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PctI GAATGC 3 cut(s) 595, 823, 944
PfeI GAWTC 7 cut(s) 193, 232, 349, 608, 763, 902, 1253
Ple19I CGATCG 1 cut(s) 142
PleI GAGTC 3 cut(s) 92, 743, 748
PpsI GAGTC 3 cut(s) 92, 743, 748
PpuMI RGGWCCY 2 cut(s) 104, 208
PscI ACATGT 1 cut(s) 624
PshAI GACNNNNGTC 1 cut(s) 102
PsiI TTATAA 1 cut(s) 1103
Psp124BI GAGCTC 2 cut(s) 123, 790
Psp5II RGGWCCY 2 cut(s) 104, 208
Psp6I CCWGG 1 cut(s) 1008
PspGI CCWGG 1 cut(s) 1008
PspN4I GGNNCC 8 cut(s) 75, 105, 106, 163, 209, 210, 219, 1287
PspPI GGNCC 4 cut(s) 19, 104, 208, 650
PspPPI RGGWCCY 2 cut(s) 104, 208
PsuI RGATCY 1 cut(s) 1045
PvuI CGATCG 1 cut(s) 142
RsaI GTAC 2 cut(s) 629, 846
RsaNI GTAC 2 cut(s) 628, 845
SacI GAGCTC 2 cut(s) 123, 790
SaqAI TTAA 2 cut(s) 417, 1169
Sau3AI GATC 5 cut(s) 139, 272, 464, 772, 1045
Sau96I GGNCC 4 cut(s) 19, 104, 208, 650
SchI GAGTC 3 cut(s) 92, 743, 749
ScrFI CCNGG 6 cut(s) 18, 89, 173, 223, 567, 1010
SduI GDGCHC 6 cut(s) 76, 123, 222, 454, 662, 790
SfaNI GCATC 1 cut(s) 712
SfuI TTCGAA 1 cut(s) 928
SinI GGWCC 3 cut(s) 104, 208, 650
Sse9I AATT 2 cut(s) 891, 906
SspMI CTAG 3 cut(s) 38, 534, 1053
SstI GAGCTC 2 cut(s) 123, 790
StyD4I CCNGG 6 cut(s) 16, 87, 171, 221, 565, 1008
StyI CCWWGG 3 cut(s) 1052, 1239, 1263
TaaI ACNGT 3 cut(s) 520, 601, 685
TaiI ACGT 1 cut(s) 327
TaqI TCGA 2 cut(s) 135, 928
TaqII GACCGA 1 cut(s) 1107
TasI AATT 2 cut(s) 891, 906
TatI WGTACW 2 cut(s) 627, 844
TauI GCSGC 5 cut(s) 129, 157, 205, 248, 668
TfiI GAWTC 7 cut(s) 193, 232, 349, 608, 763, 902, 1253
Tru1I TTAA 2 cut(s) 417, 1169
Tru9I TTAA 2 cut(s) 417, 1169
TscAI CASTG 1 cut(s) 1275
TseFI GTSAC 4 cut(s) 595, 778, 1084, 1153
TseI GCWGC 5 cut(s) 31, 34, 427, 511, 668
Tsp45I GTSAC 4 cut(s) 595, 778, 1084, 1153
TspDTI ATGAA 4 cut(s) 27, 121, 878, 1245
TspGWI ACGGA 2 cut(s) 423, 938
TspRI CASTG 1 cut(s) 1275
VpaK11BI GGWCC 3 cut(s) 104, 208, 650
XceI RCATGY 1 cut(s) 628
XcmI CCANNNNNNNNNTGG 2 cut(s) 440, 1016
XmaJI CCTAGG 1 cut(s) 1052
XspI CTAG 3 cut(s) 38, 534, 1053
ZraI GACGTC 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.