pycom01g18080

U-box domain-containing protein 62-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
17206683 .. 17210156
3474 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18080.7

Sequence Viewer

Length: 1326 bp
ATGTCCTCCGAAGAATTGGGTCTGGTTTCGACCCAGAACGGGCTCAACTCTCCAATCGTGTTCCAAGACGAGAACTTGCGATTCAATTGCGGAGCTCCACCGCAGCGCCGGGTCGGGGACACGGGTCCCAAGACCCGCGAGCTCACCGGGTTCATCGACGACCGGTTCTTCGCGCCACAGAGCTCGGACTTCCGGCGGAGCATGTATAGCGAGAACTTGGATCGGCGGGACCCGCCCGAGCCGCGAAACTGGAACTCGAACGGAGCTGATACGACGCCGAGTGGCGAGGGATCGGACGAGGACGACGATGACGAGGACGAGGACGACGATGACGTGGACGACGATGATGAAGGTGATGGCGGGCTTGTCGGAGTGGAGAGCAGAAACAAGGGCATTGCCGGTAATAATGGGAGTAATGGGGAGGACAAAATGGGAAATGGGAAGGTTAAGCATCATCAGCAGCAGCACCTTTCTTCTTTTGGTGGGACTGTGATAGTAGGATCAAGTAGAGAAGTGTTGGTGAAAGAACATAGTGCTGGACAGCAAACAGTGAATAACAACACAAGGGCTAGTCCCAGTAGTAATGCGCAGCAAGGAAGACTGGGGAATTACCACAATGCCGTCACGGTTGCTGAACCGGATGGCGACATGTATTATTCGCAGTATTTGCAGGGCTCTGACGGGTCTGGTTCTGCTCCGAAGGATTTGGTTGTGGAAAATGGTTGTGGTCTTAGTGGAAGAAAGGATGTTATGTACTCGAGCGATTCTGGAGAATCTTTGAGGGCCATTCTCTCTGATCCTGTGACGGGAGCTCTGATGGACGACGCAATGATATTGCCTTGTGGACATTCCTTTGGAGGTGGTGGAATTCAGCATGTTATTAGAATGAAAGCTTGCTACACCTGTTCTCAGTCAATTTCAGAAGACTTAATTGCTCCAAATCTTTCTCTTCGAGCTGCTGTGCAGGCATTCCGTCGGGAAGAAGAGTTACAGTTTTATCGCTCATCCAAAAGAAGAAGAGAAAGGTTTGACCAGGAAAAGGGTGGTGGTGGTGATTTAGTTTTCATGGATTCTCCAAGGGGTAGAGGTGTTCAGTTTCCGTTCGCTGTGACTGACAGAGTTATTATAAAGGGGAACAAGAGGACACCACAACGCTTCGTCGGACGCGAGGCTGTTGTGACAACCCAATGCTTAAACGGATGGTATGTGGTAAAGACGTTGGATAACGCAGAGAGCGTGAAATTGCAGTATCGCTCCCTTGCCAAGGTAGCCGACGACCCAACGTCCAAGCCAATGTCAAGCAAGATGGCACCTAACTGGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

442

Amino Acids

48.11

Weight (kDa)

4.96

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1127
Acc16I TGCGCA 1 cut(s) 588
AccB1I GGYRCC 1 cut(s) 1309
AccII CGCG 4 cut(s) 138, 173, 244, 1167
AciI CCGC 8 cut(s) 90, 101, 136, 196, 226, 233, 242, 360
AclWI GGATC 4 cut(s) 228, 298, 508, 791
AcsI RAATTY 1 cut(s) 867
AcyI GRCGYC 1 cut(s) 275
AfaI GTAC 1 cut(s) 755
AfiI CCNNNNNNNGG 5 cut(s) 39, 115, 806, 1039, 1264
AflIII ACRYGT 1 cut(s) 648
AgeI ACCGGT 1 cut(s) 162
AgsI TTSAA 1 cut(s) 85
AhdI GACNNNNNGTC 1 cut(s) 1282
AjiI CACGTC 1 cut(s) 334
AjnI CCWGG 1 cut(s) 1032
AluBI AGCT 7 cut(s) 95, 142, 183, 266, 812, 893, 956
AluI AGCT 7 cut(s) 95, 142, 183, 266, 812, 893, 956
Alw21I GWGCWC 4 cut(s) 97, 144, 185, 814
AlwI GGATC 4 cut(s) 228, 298, 508, 791
Ama87I CYCGRG 2 cut(s) 236, 757
AoxI GGCC 1 cut(s) 783
ApeKI GCWGC 5 cut(s) 103, 460, 463, 589, 956
ApoI RAATTY 1 cut(s) 867
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AsiGI ACCGGT 1 cut(s) 162
AspLEI GCGC 3 cut(s) 108, 175, 589
AspS9I GGNCC 3 cut(s) 125, 229, 783
AsuC2I CCSGG 2 cut(s) 110, 148
AsuHPI GGTGA 4 cut(s) 136, 365, 532, 1064
AvaI CYCGRG 2 cut(s) 236, 757
AvaII GGWCC 2 cut(s) 125, 229
BanI GGYRCC 1 cut(s) 1309
BanII GRGCYC 6 cut(s) 45, 97, 144, 185, 677, 814
BarI GAAGNNNNNNTAC 2 cut(s) 972, 1004
BbsI GAAGAC 2 cut(s) 604, 930
Bbv12I GWGCWC 4 cut(s) 97, 144, 185, 814
BbvI GCAGC 5 cut(s) 115, 472, 475, 601, 943
BccI CCATC 5 cut(s) 350, 635, 811, 1194, 1300
BceAI ACGGC 1 cut(s) 605
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BciT130I CCWGG 1 cut(s) 1034
BcnI CCSGG 2 cut(s) 110, 148
BfaI CTAG 1 cut(s) 570
BfmI CTRYAG 1 cut(s) 1322
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 6 cut(s) 104, 242, 461, 464, 590, 957
BlsI GCNGC 6 cut(s) 105, 243, 462, 465, 591, 958
Bme1390I CCNGG 3 cut(s) 110, 148, 1034
Bme18I GGWCC 2 cut(s) 125, 229
BmeRI GACNNNNNGTC 1 cut(s) 1282
BmeT110I CYCGRG 2 cut(s) 236, 757
BmgBI CACGTC 1 cut(s) 334
BmgT120I GGNCC 3 cut(s) 125, 229, 783
BmiI GGNNCC 5 cut(s) 126, 127, 230, 231, 1311
BmrFI CCNGG 3 cut(s) 110, 148, 1034
BmrI ACTGGG 2 cut(s) 570, 611
BmsI GCATC 1 cut(s) 460
BmuI ACTGGG 2 cut(s) 570, 611
BoxI GACNNNNGTC 1 cut(s) 123
BpiI GAAGAC 2 cut(s) 604, 930
BpmI CTGGAG 1 cut(s) 789
BpuMI CCSGG 2 cut(s) 110, 148
BsaHI GRCGYC 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 1076, 1263
BsaWI WCCGGW 2 cut(s) 162, 637
Bsc4I CCNNNNNNNGG 5 cut(s) 39, 115, 806, 1039, 1264
Bse118I RCCGGY 2 cut(s) 162, 398
Bse1I ACTGG 4 cut(s) 254, 576, 606, 1322
Bse3DI GCAATG 2 cut(s) 393, 834
BseBI CCWGG 1 cut(s) 1034
BseDI CCNNGG 2 cut(s) 1076, 1263
BseGI GGATG 4 cut(s) 646, 751, 1004, 1205
BseLI CCNNNNNNNGG 5 cut(s) 39, 115, 806, 1039, 1264
BseMI GCAATG 2 cut(s) 393, 834
BseMII CTCAG 1 cut(s) 923
BseNI ACTGG 4 cut(s) 254, 576, 606, 1322
BseXI GCAGC 5 cut(s) 115, 472, 475, 601, 943
BsgI GTGCAG 1 cut(s) 983
Bsh1236I CGCG 4 cut(s) 138, 173, 244, 1167
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 1 cut(s) 785
BshNI GGYRCC 1 cut(s) 1309
BshTI ACCGGT 1 cut(s) 162
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 4 cut(s) 97, 144, 185, 814
BsiHKCI CYCGRG 2 cut(s) 236, 757
BsiSI CCGG 6 cut(s) 109, 147, 163, 193, 399, 638
BslFI GGGAC 5 cut(s) 111, 131, 242, 499, 558
BslI CCNNNNNNNGG 5 cut(s) 39, 115, 806, 1039, 1264
BsmFI GGGAC 5 cut(s) 111, 131, 242, 499, 558
BsmI GAATGC 1 cut(s) 968
BsnI GGCC 1 cut(s) 785
BsoBI CYCGRG 2 cut(s) 236, 757
Bsp1286I GDGCHC 6 cut(s) 45, 97, 144, 185, 677, 814
Bsp143I GATC 4 cut(s) 220, 290, 500, 796
BspACI CCGC 8 cut(s) 90, 101, 136, 196, 226, 233, 242, 360
BspANI GGCC 1 cut(s) 785
BspCNI CTCAG 1 cut(s) 922
BspFNI CGCG 4 cut(s) 138, 173, 244, 1167
BspLI GGNNCC 5 cut(s) 126, 127, 230, 231, 1311
BspPI GGATC 4 cut(s) 228, 298, 508, 791
BspT107I GGYRCC 1 cut(s) 1309
BsrDI GCAATG 2 cut(s) 393, 834
BsrFI RCCGGY 2 cut(s) 162, 398
BsrI ACTGG 4 cut(s) 254, 576, 606, 1322
BssAI RCCGGY 2 cut(s) 162, 398
BssECI CCNNGG 2 cut(s) 1076, 1263
BssMI GATC 4 cut(s) 220, 290, 500, 796
BssNI GRCGYC 1 cut(s) 275
BssT1I CCWWGG 2 cut(s) 1076, 1263
Bst2UI CCWGG 1 cut(s) 1034
Bst4CI ACNGT 4 cut(s) 490, 550, 628, 993
Bst6I CTCTTC 3 cut(s) 954, 978, 1012
BstACI GRCGYC 1 cut(s) 275
BstAPI GCANNNNNTGC 1 cut(s) 667
BstC8I GCNNGC 4 cut(s) 140, 362, 895, 966
BstDEI CTNAG 2 cut(s) 731, 909
BstENI CCTNNNNNAGG 1 cut(s) 1262
BstF5I GGATG 4 cut(s) 646, 751, 1004, 1205
BstFNI CGCG 4 cut(s) 138, 173, 244, 1167
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 3 cut(s) 108, 175, 589
BstKTI GATC 4 cut(s) 223, 293, 503, 799
BstMBI GATC 4 cut(s) 220, 290, 500, 796
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 7 cut(s) 207, 232, 241, 457, 667, 965, 1268
BstNI CCWGG 1 cut(s) 1034
BstNSI RCATGY 3 cut(s) 205, 652, 878
BstPAI GACNNNNGTC 1 cut(s) 123
BstSCI CCNGG 3 cut(s) 108, 146, 1032
BstSFI CTRYAG 1 cut(s) 1322
BstUI CGCG 4 cut(s) 138, 173, 244, 1167
BstV1I GCAGC 5 cut(s) 115, 472, 475, 601, 943
BstV2I GAAGAC 2 cut(s) 604, 930
BsuRI GGCC 1 cut(s) 785
BtrI CACGTC 1 cut(s) 334
BtsCI GGATG 4 cut(s) 646, 751, 1004, 1205
BtsIMutI CAGTG 1 cut(s) 555
Cac8I GCNNGC 4 cut(s) 140, 362, 895, 966
CfoI GCGC 3 cut(s) 108, 175, 589
Cfr10I RCCGGY 2 cut(s) 162, 398
Cfr13I GGNCC 3 cut(s) 125, 229, 783
CseI GACGC 3 cut(s) 283, 833, 1173
Csp6I GTAC 1 cut(s) 754
CspAI ACCGGT 1 cut(s) 162
CviAII CATG 4 cut(s) 202, 649, 875, 1066
CviQI GTAC 1 cut(s) 754
DdeI CTNAG 2 cut(s) 731, 909
DpnI GATC 4 cut(s) 222, 292, 502, 798
DpnII GATC 4 cut(s) 220, 290, 500, 796
DriI GACNNNNNGTC 1 cut(s) 1282
Eam1104I CTCTTC 3 cut(s) 954, 978, 1012
Eam1105I GACNNNNNGTC 1 cut(s) 1282
EarI CTCTTC 3 cut(s) 954, 978, 1012
EciI GGCGGA 1 cut(s) 211
Ecl136II GAGCTC 4 cut(s) 95, 142, 183, 812
Eco130I CCWWGG 2 cut(s) 1076, 1263
Eco24I GRGCYC 6 cut(s) 45, 97, 144, 185, 677, 814
Eco47I GGWCC 2 cut(s) 125, 229
Eco53kI GAGCTC 4 cut(s) 95, 142, 183, 812
Eco88I CYCGRG 2 cut(s) 236, 757
EcoICRI GAGCTC 4 cut(s) 95, 142, 183, 812
EcoNI CCTNNNNNAGG 1 cut(s) 1262
EcoO109I RGGNCCY 2 cut(s) 125, 229
EcoRI GAATTC 1 cut(s) 867
EcoRII CCWGG 1 cut(s) 1032
EcoT14I CCWWGG 2 cut(s) 1076, 1263
EcoT38I GRGCYC 6 cut(s) 45, 97, 144, 185, 677, 814
ErhI CCWWGG 2 cut(s) 1076, 1263
FaeI CATG 4 cut(s) 205, 652, 878, 1069
FaiI YATR 9 cut(s) 203, 207, 531, 650, 752, 876, 1067, 1127, 1206
FaqI GGGAC 5 cut(s) 111, 131, 242, 499, 558
FatI CATG 4 cut(s) 201, 648, 874, 1065
FauI CCCGC 4 cut(s) 143, 219, 240, 353
Fnu4HI GCNGC 6 cut(s) 104, 242, 461, 464, 590, 957
FokI GGATG 4 cut(s) 653, 758, 991, 1212
FriOI GRGCYC 6 cut(s) 45, 97, 144, 185, 677, 814
Fsp4HI GCNGC 6 cut(s) 104, 242, 461, 464, 590, 957
FspBI CTAG 1 cut(s) 570
FspI TGCGCA 1 cut(s) 588
GlaI GCGC 3 cut(s) 107, 174, 588
GluI GCNGC 6 cut(s) 104, 242, 461, 464, 590, 957
GsuI CTGGAG 1 cut(s) 789
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 1 cut(s) 785
HapII CCGG 6 cut(s) 109, 147, 163, 193, 399, 638
HgaI GACGC 3 cut(s) 283, 833, 1173
HhaI GCGC 3 cut(s) 108, 175, 589
Hin1I GRCGYC 1 cut(s) 275
Hin1II CATG 4 cut(s) 205, 652, 878, 1069
Hin6I GCGC 3 cut(s) 106, 173, 587
HinP1I GCGC 3 cut(s) 106, 173, 587
HindIII AAGCTT 1 cut(s) 891
HinfI GANTC 4 cut(s) 81, 764, 773, 1070
HpaII CCGG 6 cut(s) 109, 147, 163, 193, 399, 638
HphI GGTGA 4 cut(s) 136, 365, 532, 1064
Hpy166II GTNNAC 2 cut(s) 337, 845
Hpy188III TCNNGA 2 cut(s) 768, 977
Hpy8I GTNNAC 2 cut(s) 337, 845
Hpy99I CGWCG 9 cut(s) 161, 277, 308, 329, 344, 827, 978, 1163, 1277
HpyAV CCTTC 3 cut(s) 344, 436, 694
HpyCH4III ACNGT 4 cut(s) 490, 550, 628, 993
HpyCH4IV ACGT 3 cut(s) 333, 1217, 1283
HpyCH4V TGCA 3 cut(s) 670, 964, 1246
HpyF10VI GCNNNNNNNGC 7 cut(s) 207, 232, 241, 457, 667, 965, 1268
HpyF3I CTNAG 2 cut(s) 731, 909
HpySE526I ACGT 3 cut(s) 333, 1217, 1283
Hsp92I GRCGYC 1 cut(s) 275
Hsp92II CATG 4 cut(s) 205, 652, 878, 1069
HspAI GCGC 3 cut(s) 106, 173, 587
KflI GGGWCCC 2 cut(s) 125, 229
Kzo9I GATC 4 cut(s) 220, 290, 500, 796
LmnI GCTCC 8 cut(s) 92, 100, 198, 263, 700, 809, 940, 1259
Lsp1109I GCAGC 5 cut(s) 115, 472, 475, 601, 943
LweI GCATC 1 cut(s) 460
MaeI CTAG 1 cut(s) 570
MaeII ACGT 3 cut(s) 333, 1217, 1283
MaeIII GTNAC 5 cut(s) 622, 802, 987, 1108, 1177
MalI GATC 4 cut(s) 222, 292, 502, 798
MboI GATC 4 cut(s) 220, 290, 500, 796
MfeI CAATTG 1 cut(s) 85
MhlI GDGCHC 6 cut(s) 45, 97, 144, 185, 677, 814
MluCI AATT 7 cut(s) 14, 85, 607, 867, 915, 930, 1241
MmeI TCCRAC 3 cut(s) 349, 1141, 1200
MseI TTAA 3 cut(s) 447, 929, 1193
MspI CCGG 6 cut(s) 109, 147, 163, 193, 399, 638
MspR9I CCNGG 3 cut(s) 110, 148, 1034
MunI CAATTG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 968
MvaI CCWGG 1 cut(s) 1034
MvnI CGCG 4 cut(s) 138, 173, 244, 1167
MwoI GCNNNNNNNGC 7 cut(s) 207, 232, 241, 457, 667, 965, 1268
NciI CCSGG 2 cut(s) 110, 148
NdeII GATC 4 cut(s) 220, 290, 500, 796
NlaIII CATG 4 cut(s) 205, 652, 878, 1069
NlaIV GGNNCC 5 cut(s) 126, 127, 230, 231, 1311
NmeAIII GCCGAG 1 cut(s) 303
NmuCI GTSAC 4 cut(s) 622, 802, 1108, 1177
NsbI TGCGCA 1 cut(s) 588
NspI RCATGY 3 cut(s) 205, 652, 878
PaeR7I CTCGAG 1 cut(s) 757
PciI ACATGT 1 cut(s) 648
PcsI WCGNNNNNNNCGW 7 cut(s) 303, 309, 324, 330, 339, 1164, 1233
PctI GAATGC 1 cut(s) 968
PfeI GAWTC 4 cut(s) 81, 764, 773, 1070
PinAI ACCGGT 1 cut(s) 162
PkrI GCNGC 6 cut(s) 105, 243, 462, 465, 591, 958
PpuMI RGGWCCY 2 cut(s) 125, 229
PscI ACATGT 1 cut(s) 648
PshAI GACNNNNGTC 1 cut(s) 123
PsiI TTATAA 1 cut(s) 1127
Psp124BI GAGCTC 4 cut(s) 97, 144, 185, 814
Psp5II RGGWCCY 2 cut(s) 125, 229
Psp6I CCWGG 1 cut(s) 1032
PspGI CCWGG 1 cut(s) 1032
PspN4I GGNNCC 5 cut(s) 126, 127, 230, 231, 1311
PspPI GGNCC 3 cut(s) 125, 229, 783
PspPPI RGGWCCY 2 cut(s) 125, 229
PspXI VCTCGAGB 1 cut(s) 757
RsaI GTAC 1 cut(s) 755
RsaNI GTAC 1 cut(s) 754
SacI GAGCTC 4 cut(s) 97, 144, 185, 814
SaqAI TTAA 3 cut(s) 447, 929, 1193
SatI GCNGC 6 cut(s) 104, 242, 461, 464, 590, 957
Sau3AI GATC 4 cut(s) 220, 290, 500, 796
Sau96I GGNCC 3 cut(s) 125, 229, 783
ScrFI CCNGG 3 cut(s) 110, 148, 1034
SduI GDGCHC 6 cut(s) 45, 97, 144, 185, 677, 814
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 1 cut(s) 1322
Sfr274I CTCGAG 1 cut(s) 757
SinI GGWCC 2 cut(s) 125, 229
SlaI CTCGAG 1 cut(s) 757
SmlI CTYRAG 1 cut(s) 757
SmoI CTYRAG 1 cut(s) 757
Sse9I AATT 7 cut(s) 14, 85, 607, 867, 915, 930, 1241
SsiI CCGC 8 cut(s) 90, 101, 136, 196, 226, 233, 242, 360
SspMI CTAG 1 cut(s) 570
SstI GAGCTC 4 cut(s) 97, 144, 185, 814
StyD4I CCNGG 3 cut(s) 108, 146, 1032
StyI CCWWGG 2 cut(s) 1076, 1263
TaaI ACNGT 4 cut(s) 490, 550, 628, 993
TaiI ACGT 3 cut(s) 336, 1220, 1286
TaqI TCGA 5 cut(s) 29, 156, 257, 758, 952
TasI AATT 7 cut(s) 14, 85, 607, 867, 915, 930, 1241
TatI WGTACW 1 cut(s) 753
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 4 cut(s) 81, 764, 773, 1070
Tru1I TTAA 3 cut(s) 447, 929, 1193
Tru9I TTAA 3 cut(s) 447, 929, 1193
TscAI CASTG 1 cut(s) 555
TseFI GTSAC 4 cut(s) 622, 802, 1108, 1177
TseI GCWGC 5 cut(s) 103, 460, 463, 589, 956
Tsp45I GTSAC 4 cut(s) 622, 802, 1108, 1177
TspDTI ATGAA 4 cut(s) 142, 363, 902, 1054
TspGWI ACGGA 4 cut(s) 276, 962, 1089, 1212
TspRI CASTG 1 cut(s) 555
VpaK11BI GGWCC 2 cut(s) 125, 229
XagI CCTNNNNNAGG 1 cut(s) 1262
XapI RAATTY 1 cut(s) 867
XceI RCATGY 3 cut(s) 205, 652, 878
XcmI CCANNNNNNNNNTGG 1 cut(s) 1040
XhoI CTCGAG 1 cut(s) 757
XspI CTAG 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.