Rh1CG356500

U-box domain-containing protein 62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006755
Physical Location & Seq
Reverse (-)
63112614 .. 63115478
2865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG356500.1

Sequence Viewer

Length: 903 bp
ATGTCCTCCGAAGAACTGGGTCTCAACTCGCCGCAGCTAGTCTTCCACCAAGACGAGGCCTTGCGGTTCGGGGCACCGCCTCAGCGCCGGGTCGGGGACTCGGGTCCGACGAAGACCCGAGAGCTCAGCGGCTTCATCGACGATCGGTTCTTCCCGCCGCAAAACGCCGACTTCCGGCGGGGATTGTACAGCGAGAACCCGGAGCGGCGGGACCCGCCGGAGCCCCGGAACTGGAATCCGAATGCGACCGCCGTGAGGACGCCGAGCGGCGAGGGATCGGACGACGATGAGGATGAGGATGACGACGACGACGACGTCGAGGACGACGATGATGACGGCGACGTCGGAGGGTTGTTCGGAGTGGAGAATAGGAGCAAGGGCAATGGTGGTAATAATGTGAGTAATGGCGAGGACAAAATGGGAAATGGGAATGTTAAGCACCAGCAGCTCCATTCTTCTTTTGGTGGGGCTTTGATATTAGGATCAAGTAGGGAGGTGTTGGAGAAAGACCATAGTGTTAGCGTAGGGCAGCAGACACTGAATAACAACAACATCAGGGACAGTCCCAGTAATAATCATCATGAGCACCTGCCAGGAAGGGTTGGGAGTTATCAGAATGCAATCACGGTTGCTGAATCATCAGACGGCGACATGTATTACTCGCAGTATTTGCAGGGCTCGGAGGGCTCTGGCGCTGCTCAGAAGGATTTGGTTGTGGAAAATGGTTGTGGGTTTAGTGGAAGAAAGGATGCTTTGTGTTCAAGTGAGTCTGGAGACTCTTTGAGGGCGATTCTCTCTGATCCTGTGACGGGAGCTCTGATGGATGATGCAATGATATTGCCTTGTGGGCATTCATTTGGAGGCGGTGGAGTACAGCAAGTTATTAGAATGGTGAGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box

Protein Analysis

300

Amino Acids

32.26

Weight (kDa)

4.42

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 597
AasI GACNNNNNNGTC 2 cut(s) 314, 341
AatII GACGTC 2 cut(s) 318, 345
Acc36I ACCTGC 1 cut(s) 597
AccB1I GGYRCC 1 cut(s) 73
AccBSI CCGCTC 2 cut(s) 205, 267
AclWI GGATC 3 cut(s) 283, 490, 794
AcyI GRCGYC 3 cut(s) 260, 315, 342
AfaI GTAC 2 cut(s) 188, 873
AfiI CCNNNNNNNGG 6 cut(s) 55, 94, 174, 231, 255, 809
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 1 cut(s) 762
AjnI CCWGG 1 cut(s) 592
AluBI AGCT 5 cut(s) 37, 124, 448, 815, 897
AluI AGCT 5 cut(s) 37, 124, 448, 815, 897
Alw21I GWGCWC 3 cut(s) 126, 588, 817
Alw26I GTCTC 2 cut(s) 26, 768
AlwI GGATC 3 cut(s) 283, 490, 794
AlwNI CAGNNNCTG 1 cut(s) 538
Ama87I CYCGRG 2 cut(s) 100, 117
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 4 cut(s) 34, 445, 529, 695
AspLEI GCGC 2 cut(s) 87, 695
AspS9I GGNCC 2 cut(s) 104, 211
AsuC2I CCSGG 3 cut(s) 89, 200, 226
AvaI CYCGRG 2 cut(s) 100, 117
AvaII GGWCC 2 cut(s) 104, 211
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 5 cut(s) 126, 225, 680, 689, 817
BbsI GAAGAC 2 cut(s) 34, 119
Bbv12I GWGCWC 3 cut(s) 126, 588, 817
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 4 cut(s) 46, 457, 541, 682
BccI CCATC 1 cut(s) 814
BceAI ACGGC 3 cut(s) 236, 352, 661
BciT130I CCWGG 1 cut(s) 594
BcnI CCSGG 3 cut(s) 89, 200, 226
BcoDI GTCTC 2 cut(s) 26, 768
BfaI CTAG 2 cut(s) 38, 901
BfoI RGCGCY 2 cut(s) 88, 696
BfuAI ACCTGC 1 cut(s) 597
BglI GCCNNNNNGGC 1 cut(s) 847
BisI GCNGC 9 cut(s) 32, 35, 130, 158, 206, 268, 446, 530, 696
BlpI GCTNAGC 1 cut(s) 125
BlsI GCNGC 9 cut(s) 33, 36, 131, 159, 207, 269, 447, 531, 697
Bme1390I CCNGG 4 cut(s) 89, 200, 226, 594
Bme18I GGWCC 2 cut(s) 104, 211
BmeT110I CYCGRG 2 cut(s) 100, 117
BmgT120I GGNCC 2 cut(s) 104, 211
BmiI GGNNCC 5 cut(s) 75, 105, 212, 213, 222
BmrFI CCNGG 4 cut(s) 89, 200, 226, 594
BmrI ACTGGG 2 cut(s) 26, 561
BmsI GCATC 2 cut(s) 739, 817
BmuI ACTGGG 2 cut(s) 26, 561
BoxI GACNNNNGTC 1 cut(s) 102
BpiI GAAGAC 2 cut(s) 34, 119
BpmI CTGGAG 1 cut(s) 792
Bpu10I CCTNAGC 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 125
BpuMI CCSGG 3 cut(s) 89, 200, 226
BsaHI GRCGYC 3 cut(s) 260, 315, 342
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 224
Bsc4I CCNNNNNNNGG 6 cut(s) 55, 94, 174, 231, 255, 809
Bse1I ACTGG 3 cut(s) 21, 236, 567
Bse3DI GCAATG 2 cut(s) 388, 837
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 4 cut(s) 298, 304, 754, 829
BseLI CCNNNNNNNGG 6 cut(s) 55, 94, 174, 231, 255, 809
BseMI GCAATG 2 cut(s) 388, 837
BseMII CTCAG 3 cut(s) 95, 139, 713
BseNI ACTGG 3 cut(s) 21, 236, 567
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 4 cut(s) 46, 457, 541, 682
Bsh1285I CGRYCG 2 cut(s) 145, 249
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 73
BsiEI CGRYCG 2 cut(s) 145, 249
BsiHKAI GWGCWC 3 cut(s) 126, 588, 817
BsiHKCI CYCGRG 2 cut(s) 100, 117
BsiSI CCGG 5 cut(s) 88, 175, 200, 218, 226
BslFI GGGAC 4 cut(s) 110, 224, 549, 572
BslI CCNNNNNNNGG 6 cut(s) 55, 94, 174, 231, 255, 809
BsmAI GTCTC 2 cut(s) 26, 768
BsmFI GGGAC 4 cut(s) 110, 224, 549, 572
BsmI GAATGC 3 cut(s) 247, 622, 850
BsnI GGCC 1 cut(s) 59
Bso31I GGTCTC 1 cut(s) 26
BsoBI CYCGRG 2 cut(s) 100, 117
Bsp1286I GDGCHC 7 cut(s) 76, 126, 225, 588, 680, 689, 817
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 4 cut(s) 142, 275, 482, 799
Bsp1720I GCTNAGC 1 cut(s) 125
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 3 cut(s) 94, 138, 712
BspHI TCATGA 1 cut(s) 580
BspLI GGNNCC 5 cut(s) 75, 105, 212, 213, 222
BspMI ACCTGC 1 cut(s) 597
BspPI GGATC 3 cut(s) 283, 490, 794
BspT107I GGYRCC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 26
BsrBI CCGCTC 2 cut(s) 205, 267
BsrDI GCAATG 2 cut(s) 388, 837
BsrGI TGTACA 1 cut(s) 186
BsrI ACTGG 3 cut(s) 21, 236, 567
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 4 cut(s) 142, 275, 482, 799
BssNI GRCGYC 3 cut(s) 260, 315, 342
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 2 cut(s) 563, 628
BstACI GRCGYC 3 cut(s) 260, 315, 342
BstAPI GCANNNNNTGC 1 cut(s) 670
BstAUI TGTACA 1 cut(s) 186
BstDEI CTNAG 3 cut(s) 81, 125, 699
BstF5I GGATG 4 cut(s) 298, 304, 754, 829
BstH2I RGCGCY 2 cut(s) 88, 696
BstHHI GCGC 2 cut(s) 87, 695
BstKTI GATC 4 cut(s) 145, 278, 485, 802
BstMAI GTCTC 2 cut(s) 26, 768
BstMBI GATC 4 cut(s) 142, 275, 482, 799
BstMCI CGRYCG 2 cut(s) 145, 249
BstMWI GCNNNNNNNGC 5 cut(s) 214, 445, 670, 684, 847
BstNI CCWGG 1 cut(s) 594
BstNSI RCATGY 1 cut(s) 655
BstPAI GACNNNNGTC 1 cut(s) 102
BstSCI CCNGG 4 cut(s) 87, 198, 224, 592
BstSLI GKGCMC 1 cut(s) 76
BstV1I GCAGC 4 cut(s) 46, 457, 541, 682
BstV2I GAAGAC 2 cut(s) 34, 119
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 4 cut(s) 298, 304, 754, 829
BtsIMutI CAGTG 1 cut(s) 536
BveI ACCTGC 1 cut(s) 597
CaiI CAGNNNCTG 1 cut(s) 538
CciI TCATGA 1 cut(s) 580
CfoI GCGC 2 cut(s) 87, 695
Cfr13I GGNCC 2 cut(s) 104, 211
CseI GACGC 1 cut(s) 268
Csp6I GTAC 2 cut(s) 187, 872
CviAII CATG 2 cut(s) 581, 652
CviQI GTAC 2 cut(s) 187, 872
DdeI CTNAG 3 cut(s) 81, 125, 699
DpnI GATC 4 cut(s) 144, 277, 484, 801
DpnII GATC 4 cut(s) 142, 275, 482, 799
DrdI GACNNNNNNGTC 2 cut(s) 314, 341
DseDI GACNNNNNNGTC 2 cut(s) 314, 341
Ecl136II GAGCTC 2 cut(s) 124, 815
Eco147I AGGCCT 1 cut(s) 59
Eco24I GRGCYC 5 cut(s) 126, 225, 680, 689, 817
Eco31I GGTCTC 1 cut(s) 26
Eco47I GGWCC 2 cut(s) 104, 211
Eco53kI GAGCTC 2 cut(s) 124, 815
Eco88I CYCGRG 2 cut(s) 100, 117
EcoICRI GAGCTC 2 cut(s) 124, 815
EcoO109I RGGNCCY 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 592
EcoT38I GRGCYC 5 cut(s) 126, 225, 680, 689, 817
FaeI CATG 2 cut(s) 584, 655
FaiI YATR 3 cut(s) 513, 582, 653
FaqI GGGAC 4 cut(s) 110, 224, 549, 572
FatI CATG 2 cut(s) 580, 651
FauI CCCGC 4 cut(s) 162, 171, 201, 222
Fnu4HI GCNGC 9 cut(s) 32, 35, 130, 158, 206, 268, 446, 530, 696
FokI GGATG 4 cut(s) 305, 311, 761, 836
FriOI GRGCYC 5 cut(s) 126, 225, 680, 689, 817
Fsp4HI GCNGC 9 cut(s) 32, 35, 130, 158, 206, 268, 446, 530, 696
FspBI CTAG 2 cut(s) 38, 901
GlaI GCGC 2 cut(s) 86, 694
GluI GCNGC 9 cut(s) 32, 35, 130, 158, 206, 268, 446, 530, 696
GsuI CTGGAG 1 cut(s) 792
HaeII RGCGCY 2 cut(s) 88, 696
HaeIII GGCC 1 cut(s) 59
HapII CCGG 5 cut(s) 88, 175, 200, 218, 226
HgaI GACGC 1 cut(s) 268
HhaI GCGC 2 cut(s) 87, 695
Hin1I GRCGYC 3 cut(s) 260, 315, 342
Hin1II CATG 2 cut(s) 584, 655
Hin6I GCGC 2 cut(s) 85, 693
HinP1I GCGC 2 cut(s) 85, 693
HinfI GANTC 6 cut(s) 98, 235, 635, 767, 776, 790
HpaII CCGG 5 cut(s) 88, 175, 200, 218, 226
Hpy188III TCNNGA 2 cut(s) 581, 771
HpyAV CCTTC 2 cut(s) 591, 697
HpyCH4III ACNGT 2 cut(s) 563, 628
HpyCH4IV ACGT 2 cut(s) 315, 342
HpyCH4V TGCA 3 cut(s) 620, 673, 830
HpyF10VI GCNNNNNNNGC 5 cut(s) 214, 445, 670, 684, 847
HpyF3I CTNAG 3 cut(s) 81, 125, 699
HpySE526I ACGT 2 cut(s) 315, 342
Hsp92I GRCGYC 3 cut(s) 260, 315, 342
Hsp92II CATG 2 cut(s) 584, 655
HspAI GCGC 2 cut(s) 85, 693
KflI GGGWCCC 1 cut(s) 211
Kzo9I GATC 4 cut(s) 142, 275, 482, 799
LmnI GCTCC 5 cut(s) 202, 220, 372, 453, 812
Lsp1109I GCAGC 4 cut(s) 46, 457, 541, 682
LweI GCATC 2 cut(s) 739, 817
MaeI CTAG 2 cut(s) 38, 901
MaeII ACGT 2 cut(s) 315, 342
MaeIII GTNAC 1 cut(s) 805
MalI GATC 4 cut(s) 144, 277, 484, 801
MbiI CCGCTC 2 cut(s) 205, 267
MboI GATC 4 cut(s) 142, 275, 482, 799
MboII GAAGA 6 cut(s) 23, 34, 124, 142, 447, 753
MhlI GDGCHC 7 cut(s) 76, 126, 225, 588, 680, 689, 817
MlyI GAGTC 3 cut(s) 92, 770, 776
MmeI TCCRAC 3 cut(s) 131, 325, 480
MseI TTAA 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 129
MspI CCGG 5 cut(s) 88, 175, 200, 218, 226
MspR9I CCNGG 4 cut(s) 89, 200, 226, 594
Mva1269I GAATGC 3 cut(s) 247, 622, 850
MvaI CCWGG 1 cut(s) 594
MwoI GCNNNNNNNGC 5 cut(s) 214, 445, 670, 684, 847
NciI CCSGG 3 cut(s) 89, 200, 226
NdeII GATC 4 cut(s) 142, 275, 482, 799
NlaIII CATG 2 cut(s) 584, 655
NlaIV GGNNCC 5 cut(s) 75, 105, 212, 213, 222
NmeAIII GCCGAG 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 805
NspI RCATGY 1 cut(s) 655
PagI TCATGA 1 cut(s) 580
PaqCI CACCTGC 1 cut(s) 597
PceI AGGCCT 1 cut(s) 59
PciI ACATGT 1 cut(s) 651
PcsI WCGNNNNNNNCGW 6 cut(s) 107, 309, 312, 315, 321, 324
PctI GAATGC 3 cut(s) 247, 622, 850
PfeI GAWTC 3 cut(s) 235, 635, 790
PflFI GACNNNGTC 1 cut(s) 314
PkrI GCNGC 9 cut(s) 33, 36, 131, 159, 207, 269, 447, 531, 697
Ple19I CGATCG 1 cut(s) 145
PleI GAGTC 3 cut(s) 92, 770, 775
PpsI GAGTC 3 cut(s) 92, 770, 775
PpuMI RGGWCCY 1 cut(s) 211
PscI ACATGT 1 cut(s) 651
PshAI GACNNNNGTC 1 cut(s) 102
Psp124BI GAGCTC 2 cut(s) 126, 817
Psp5II RGGWCCY 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 592
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 5 cut(s) 75, 105, 212, 213, 222
PspPI GGNCC 2 cut(s) 104, 211
PspPPI RGGWCCY 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 538
PsyI GACNNNGTC 1 cut(s) 314
PvuI CGATCG 1 cut(s) 145
RsaI GTAC 2 cut(s) 188, 873
RsaNI GTAC 2 cut(s) 187, 872
SacI GAGCTC 2 cut(s) 126, 817
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 9 cut(s) 32, 35, 130, 158, 206, 268, 446, 530, 696
Sau3AI GATC 4 cut(s) 142, 275, 482, 799
Sau96I GGNCC 2 cut(s) 104, 211
SchI GAGTC 3 cut(s) 92, 770, 776
ScrFI CCNGG 4 cut(s) 89, 200, 226, 594
SduI GDGCHC 7 cut(s) 76, 126, 225, 588, 680, 689, 817
SetI ASST 9 cut(s) 39, 126, 318, 345, 450, 498, 591, 817, 899
SfaNI GCATC 2 cut(s) 739, 817
SinI GGWCC 2 cut(s) 104, 211
SseBI AGGCCT 1 cut(s) 59
SspMI CTAG 2 cut(s) 38, 901
SstI GAGCTC 2 cut(s) 126, 817
StuI AGGCCT 1 cut(s) 59
StyD4I CCNGG 4 cut(s) 87, 198, 224, 592
TaaI ACNGT 2 cut(s) 563, 628
TaiI ACGT 2 cut(s) 318, 345
TaqI TCGA 2 cut(s) 138, 318
TatI WGTACW 2 cut(s) 186, 871
TauI GCSGC 5 cut(s) 34, 132, 160, 208, 270
TfiI GAWTC 3 cut(s) 235, 635, 790
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 1 cut(s) 543
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 4 cut(s) 34, 445, 529, 695
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 2 cut(s) 124, 843
TspRI CASTG 1 cut(s) 543
Tth111I GACNNNGTC 1 cut(s) 314
VpaK11BI GGWCC 2 cut(s) 104, 211
XceI RCATGY 1 cut(s) 655
XcmI CCANNNNNNNNNTGG 1 cut(s) 458
XspI CTAG 2 cut(s) 38, 901
ZraI GACGTC 2 cut(s) 316, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.