Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006755

Physical Location & Seq

Genomic Coordinates Forward (+)

48492643 .. 48498868

Gene Structure 6226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0371000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAGAGGGGAGAGTCCACAGTAAACCATCACTTAACTCACCCAGAATCTCTAGTCACATGGGAGATTATCAGAGCGCGCCCTAACCAAGGGAAGGTGAAGAAGCGAGGCACTACATGTGATTTTTATGGCCCAGAGTCTCCAGAATATGCCTCATTGCTACCGGAAGGCTGGCTCGCCGAGAAGAGAGTCATGCACCACGGGAGAAAATATATGTATTACTATGATCCGTTGGGGCACCAGTATACCACAAAAAAGGAAGTCCAGAAGGCTAAGCAAGAAGCTACGGTTCAGAATATTGAGGTGCCAGCTAAAGCTGAGGATAATGCTGTCTCCAGCTTAATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

116

Amino Acids

13.34

Weight (kDa)

7.02

Isoelectric Point (pI)

65.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05230
fragaria_vesca	FvH4_7g25940 FvH4_7g25940 FvH4_7g25940
malus_domestica	MD01G1167800.v1.1 MD07G1233800.v1.1
prunus_persica	Prupe.2G264200_v2.0.a1 Prupe.2G264200_v2.0.a1 Prupe.2G264200_v2.0.a1 Prupe.2G264200_v2.0.a1 Prupe.2G264200_v2.0.a1 Prupe.2G264200_v2.0.a1
pyrus_communis	pycom01g18080 pycom07g21160
rosa_chinensis	RchiOBHm_Chr1g0372321
rosa_laevigata	RLG00000026908
rosa_multiflora	Rmu_sc0001755.1_g000009
rosa_roxburghii	Rroxscaffold_4G00285060
rosa_rugosa	Rorug01G0370900 Rorug01G0371000 Rorug01G0371100
rosa_samantha	Rh1AG379400 Rh1BG343000 Rh1CG356500 Rh1DG374200
rosa_wichuraiana	Rw1G033360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	237, 304
AccI	GTMKAC	1 cut(s)	245
AccII	CGCG	1 cut(s)	79
AclWI	GGATC	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	89, 94
AflIII	ACRYGT	1 cut(s)	116
AluBI	AGCT	4 cut(s)	284, 311, 317, 339
AluI	AGCT	4 cut(s)	284, 311, 317, 339
Alw26I	GTCTC	2 cut(s)	144, 337
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	130
AspLEI	GCGC	2 cut(s)	79, 81
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	32, 109
BaeGI	GKGCMC	1 cut(s)	240
BanI	GGYRCC	2 cut(s)	237, 304
BbvCI	CCTCAGC	1 cut(s)	318
BccI	CCATC	1 cut(s)	36
BcoDI	GTCTC	2 cut(s)	144, 337
BfaI	CTAG	1 cut(s)	53
BlpI	GCTNAGC	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	239, 306
BpmI	CTGGAG	2 cut(s)	126, 319
Bpu10I	CCTNAGC	1 cut(s)	318
Bpu1102I	GCTNAGC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	88, 199
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 94
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	88, 199
BseLI	CCNNNNNNNGG	2 cut(s)	89, 94
BseMI	GCAATG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	241
BsePI	GCGCGC	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	2 cut(s)	237, 304
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	89, 94
BsmAI	GTCTC	2 cut(s)	144, 337
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	226
Bsp1720I	GCTNAGC	1 cut(s)	273
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	239, 306
BspPI	GGATC	1 cut(s)	221
BspT107I	GGYRCC	2 cut(s)	237, 304
BsrDI	GCAATG	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	88, 199
BssHII	GCGCGC	1 cut(s)	77
BssMI	GATC	1 cut(s)	226
BssNAI	GTATAC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	88
Bst1107I	GTATAC	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	22, 289
Bst6I	CTCTTC	1 cut(s)	179
BstC8I	GCNNGC	4 cut(s)	79, 173, 177, 309
BstDEI	CTNAG	2 cut(s)	273, 318
BstDSI	CCRYGG	1 cut(s)	199
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstFNI	CGCG	1 cut(s)	79
BstHHI	GCGC	2 cut(s)	79, 81
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	2 cut(s)	144, 337
BstMBI	GATC	1 cut(s)	226
BstNSI	RCATGY	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	240
BstUI	CGCG	1 cut(s)	79
BstZ17I	GTATAC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	199
Cac8I	GCNNGC	4 cut(s)	79, 173, 177, 309
CfoI	GCGC	2 cut(s)	79, 81
Cfr13I	GGNCC	1 cut(s)	131
CviAII	CATG	3 cut(s)	60, 117, 193
CviJI	RGCY	8 cut(s)	132, 171, 175, 272, 284, 311, 317, 339
CviKI_1	RGCY	8 cut(s)	132, 171, 175, 272, 284, 311, 317, 339
DdeI	CTNAG	2 cut(s)	273, 318
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	3 cut(s)	63, 120, 196
FaiI	YATR	9 cut(s)	61, 118, 129, 150, 194, 213, 215, 225, 246
FatI	CATG	3 cut(s)	59, 116, 192
FblI	GTMKAC	1 cut(s)	245
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	2 cut(s)	78, 80
GsuI	CTGGAG	2 cut(s)	126, 319
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	164
HhaI	GCGC	2 cut(s)	79, 81
Hin1II	CATG	3 cut(s)	63, 120, 196
Hin6I	GCGC	2 cut(s)	77, 79
HinP1I	GCGC	2 cut(s)	77, 79
HinfI	GANTC	4 cut(s)	14, 47, 137, 189
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	32, 109
Hpy166II	GTNNAC	3 cut(s)	18, 25, 246
Hpy188I	TCNGA	2 cut(s)	74, 294
Hpy188III	TCNNGA	2 cut(s)	143, 265
Hpy8I	GTNNAC	3 cut(s)	18, 25, 246
HpyAV	CCTTC	3 cut(s)	88, 161, 262
HpyCH4III	ACNGT	2 cut(s)	22, 289
HpyCH4V	TGCA	1 cut(s)	196
HpyF3I	CTNAG	2 cut(s)	273, 318
Hsp92II	CATG	3 cut(s)	63, 120, 196
HspAI	GCGC	2 cut(s)	77, 79
Kzo9I	GATC	1 cut(s)	226
LpnPI	CCDG	8 cut(s)	57, 147, 156, 157, 177, 254, 278, 321
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	112, 196
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	1 cut(s)	342
MlyI	GAGTC	3 cut(s)	23, 146, 198
MnlI	CCTC	4 cut(s)	101, 163, 295, 313
MseI	TTAA	2 cut(s)	35, 341
MspI	CCGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	79
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	63, 120, 196
NlaIV	GGNNCC	2 cut(s)	239, 306
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	120
PauI	GCGCGC	1 cut(s)	77
PciI	ACATGT	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	47
PleI	GAGTC	3 cut(s)	22, 145, 197
PpsI	GAGTC	3 cut(s)	22, 145, 197
PscI	ACATGT	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	239, 306
PspPI	GGNCC	1 cut(s)	131
PteI	GCGCGC	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	35, 341
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	3 cut(s)	23, 146, 198
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	6 cut(s)	99, 286, 306, 313, 319, 341
Sse9I	AATT	1 cut(s)	342
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	22, 289
TasI	AATT	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	2 cut(s)	35, 341
Tru9I	TTAA	2 cut(s)	35, 341
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspGWI	ACGGA	1 cut(s)	219
XagI	CCTNNNNNAGG	1 cut(s)	87
XceI	RCATGY	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	245
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.