Rorug01G0370900

U-box domain-containing protein 62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000430
Physical Location & Seq
Reverse (-)
48485268 .. 48489541
4274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0370900.1

Sequence Viewer

Length: 639 bp
ATGGCCGGGCAATCTGATCCTAACCTCTCTATCTTTTCCGCAGAAGAGGTTGAGTTTATGGCTGAGGATGAGTTGGTGGAGATTGTGCCCAATATGAGGATGGATAAACTCACTCTAATCTGTGGAGATTATGGTCCATTCTTCCCTCAAATGCCTGCCCAAGTACCGCTGTGGCTGGCAATTGCGTTGAAGAAGAGGGGGAAATGTACAATTCGACTCCCGGATTGGATGTCGGTCGAAAACTTGAGCCAAACTTTGGAAGCGGAGCGTGACTCTCAGGAATCCTTTCAAGTCCTACCTTTCCATTATGTCGAAATTTCAAGGCTTCTTTTTGATCATGCACGCGGTGACATTCCTGATGTATATACGGTGAGGTCTCTTATTGAAGACATTAGGGATGTAAGGTTTCATAAGGTCGAGACTAGCTTAGAATCATTTGAGGATGCTCGCTCTTCTGCAGTGAAGGTTAAAAATCTGTCCGCAATGGAAGTGAATTTAGTTCGTCCATTTGTTGGGAGAGCCTTACAGGCATTTTATAAGCATGGCAGTCCAGAGCTGGTTCCAAATCCAGAGAGAATGCCTCCCAGACAGCCACAAGCAACTGATAACATCCAAAGACGCCCTCTGCGGAAACGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box

Protein Analysis

212

Amino Acids

24.37

Weight (kDa)

5.66

Isoelectric Point (pI)

69.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSF2_N PF25005 14 - 71 3.3e-29 PSF2 N-terminal domain
Sld5 PF05916 76 - 171 1.4e-15 GINS complex protein helical bundle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 537
AccB7I CCANNNNNTGG 2 cut(s) 256, 512
AccII CGCG 1 cut(s) 345
AciI CCGC 6 cut(s) 39, 167, 263, 345, 480, 628
AclWI GGATC 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 315, 493
AcyI GRCGYC 1 cut(s) 619
AdeI CACNNNGTG 1 cut(s) 347
AfaI GTAC 2 cut(s) 165, 208
AfiI CCNNNNNNNGG 3 cut(s) 96, 256, 512
AgsI TTSAA 4 cut(s) 190, 290, 321, 386
AluBI AGCT 2 cut(s) 426, 556
AluI AGCT 2 cut(s) 426, 556
Alw26I GTCTC 2 cut(s) 381, 413
AlwI GGATC 1 cut(s) 11
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 315, 493
Asp700I GAANNNNTTC 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 2 cut(s) 7, 221
AsuHPI GGTGA 2 cut(s) 359, 382
AvaII GGWCC 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 393
BbvCI CCTCAGC 1 cut(s) 63
BccI CCATC 1 cut(s) 94
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 2 cut(s) 7, 221
BcoDI GTCTC 2 cut(s) 381, 413
BfaI CTAG 1 cut(s) 423
BfmI CTRYAG 1 cut(s) 456
BglI GCCNNNNNGGC 1 cut(s) 527
Bme1390I CCNGG 2 cut(s) 7, 221
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 561
BmrFI CCNGG 2 cut(s) 7, 221
BmsI GCATC 1 cut(s) 433
BpiI GAAGAC 1 cut(s) 393
BplI GAGNNNNNCTC 4 cut(s) 257, 289, 565, 597
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 265
BpuMI CCSGG 2 cut(s) 7, 221
BsaHI GRCGYC 1 cut(s) 619
BsaI GGTCTC 1 cut(s) 381
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 256, 512
Bse3DI GCAATG 1 cut(s) 489
BseGI GGATG 6 cut(s) 73, 105, 234, 403, 448, 609
BseLI CCNNNNNNNGG 3 cut(s) 96, 256, 512
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 2 cut(s) 54, 290
BseSI GKGCMC 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 345
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 237
BsiSI CCGG 2 cut(s) 6, 221
BslI CCNNNNNNNGG 3 cut(s) 96, 256, 512
BsmAI GTCTC 2 cut(s) 381, 413
BsmI GAATGC 1 cut(s) 582
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 90
Bsp1407I TGTACA 1 cut(s) 206
Bsp143I GATC 2 cut(s) 16, 334
BspACI CCGC 6 cut(s) 39, 167, 263, 345, 480, 628
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 55, 289
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 561
BspMAI CTGCAG 1 cut(s) 460
BspPI GGATC 1 cut(s) 11
BspQI GCTCTTC 1 cut(s) 457
BspTNI GGTCTC 1 cut(s) 381
BsrDI GCAATG 1 cut(s) 489
BsrGI TGTACA 1 cut(s) 206
BssMI GATC 2 cut(s) 16, 334
BssNI GRCGYC 1 cut(s) 619
Bst4CI ACNGT 2 cut(s) 370, 636
Bst6I CTCTTC 3 cut(s) 39, 188, 457
BstACI GRCGYC 1 cut(s) 619
BstAUI TGTACA 1 cut(s) 206
BstC8I GCNNGC 4 cut(s) 156, 177, 343, 448
BstDEI CTNAG 3 cut(s) 63, 276, 427
BstF5I GGATG 6 cut(s) 73, 105, 234, 403, 448, 609
BstFNI CGCG 1 cut(s) 345
BstKTI GATC 2 cut(s) 19, 337
BstMAI GTCTC 2 cut(s) 381, 413
BstMBI GATC 2 cut(s) 16, 334
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 527
BstSCI CCNGG 2 cut(s) 5, 219
BstSFI CTRYAG 1 cut(s) 456
BstSLI GKGCMC 1 cut(s) 90
BstUI CGCG 1 cut(s) 345
BstV2I GAAGAC 1 cut(s) 393
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 6 cut(s) 73, 105, 234, 403, 448, 609
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 1 cut(s) 465
Cac8I GCNNGC 4 cut(s) 156, 177, 343, 448
Cfr13I GGNCC 1 cut(s) 134
CseI GACGC 1 cut(s) 627
Csp6I GTAC 2 cut(s) 164, 207
CviAII CATG 2 cut(s) 338, 542
CviJI RGCY 9 cut(s) 5, 62, 175, 249, 325, 426, 521, 556, 592
CviKI_1 RGCY 9 cut(s) 5, 62, 175, 249, 325, 426, 521, 556, 592
CviQI GTAC 2 cut(s) 164, 207
DdeI CTNAG 3 cut(s) 63, 276, 427
DpnI GATC 2 cut(s) 18, 336
DpnII GATC 2 cut(s) 16, 334
DraIII CACNNNGTG 1 cut(s) 347
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 39, 188, 457
EarI CTCTTC 3 cut(s) 39, 188, 457
Eco31I GGTCTC 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 134
FaeI CATG 2 cut(s) 341, 545
FatI CATG 2 cut(s) 337, 541
FbaI TGATCA 1 cut(s) 334
FokI GGATG 6 cut(s) 80, 112, 241, 410, 455, 596
FspBI CTAG 1 cut(s) 423
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 6, 221
HgaI GACGC 1 cut(s) 627
Hin1I GRCGYC 1 cut(s) 619
Hin1II CATG 2 cut(s) 341, 545
HinfI GANTC 4 cut(s) 216, 272, 281, 431
HpaII CCGG 2 cut(s) 6, 221
HphI GGTGA 2 cut(s) 359, 382
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 5 cut(s) 278, 356, 418, 551, 569
HpyAV CCTTC 1 cut(s) 457
HpyCH4III ACNGT 2 cut(s) 370, 636
HpyCH4V TGCA 2 cut(s) 341, 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 527
HpyF3I CTNAG 3 cut(s) 63, 276, 427
Hsp92I GRCGYC 1 cut(s) 619
Hsp92II CATG 2 cut(s) 341, 545
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 2 cut(s) 16, 334
LguI GCTCTTC 1 cut(s) 457
LmnI GCTCC 1 cut(s) 265
LweI GCATC 1 cut(s) 433
MaeI CTAG 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 269, 347
MalI GATC 2 cut(s) 18, 336
MboI GATC 2 cut(s) 16, 334
MboII GAAGA 6 cut(s) 56, 133, 202, 205, 398, 444
MfeI CAATTG 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 4 cut(s) 180, 210, 315, 493
MlyI GAGTC 2 cut(s) 210, 266
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 2 cut(s) 6, 221
MspR9I CCNGG 2 cut(s) 7, 221
MunI CAATTG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 582
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 527
NciI CCSGG 2 cut(s) 7, 221
NdeII GATC 2 cut(s) 16, 334
NlaIII CATG 2 cut(s) 341, 545
NlaIV GGNNCC 1 cut(s) 561
NmuCI GTSAC 2 cut(s) 269, 347
PciSI GCTCTTC 1 cut(s) 457
PctI GAATGC 1 cut(s) 582
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 2 cut(s) 281, 431
PflMI CCANNNNNTGG 2 cut(s) 256, 512
PfoI TCCNGGA 1 cut(s) 219
PleI GAGTC 2 cut(s) 210, 266
PpsI GAGTC 2 cut(s) 210, 266
PsiI TTATAA 1 cut(s) 537
PspN4I GGNNCC 1 cut(s) 561
PspPI GGNCC 1 cut(s) 134
PstI CTGCAG 1 cut(s) 460
RsaI GTAC 2 cut(s) 165, 208
RsaNI GTAC 2 cut(s) 164, 207
SapI GCTCTTC 1 cut(s) 457
SaqAI TTAA 1 cut(s) 468
Sau3AI GATC 2 cut(s) 16, 334
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 2 cut(s) 210, 266
ScrFI CCNGG 2 cut(s) 7, 221
SduI GDGCHC 1 cut(s) 90
SetI ASST 9 cut(s) 27, 51, 301, 377, 407, 417, 428, 468, 558
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 1 cut(s) 456
SinI GGWCC 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
Sse9I AATT 4 cut(s) 180, 210, 315, 493
SsiI CCGC 6 cut(s) 39, 167, 263, 345, 480, 628
SspMI CTAG 1 cut(s) 423
StyD4I CCNGG 2 cut(s) 5, 219
TaaI ACNGT 2 cut(s) 370, 636
TaqI TCGA 4 cut(s) 214, 237, 312, 417
TaqII GACCGA 1 cut(s) 223
TasI AATT 4 cut(s) 180, 210, 315, 493
TatI WGTACW 1 cut(s) 206
TfiI GAWTC 2 cut(s) 281, 431
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 1 cut(s) 465
TseFI GTSAC 2 cut(s) 269, 347
Tsp45I GTSAC 2 cut(s) 269, 347
TspDTI ATGAA 1 cut(s) 398
TspRI CASTG 1 cut(s) 465
Van91I CCANNNNNTGG 2 cut(s) 256, 512
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 2 cut(s) 315, 493
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.