FvH4_4g13090

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000430
Physical Location & Seq
Reverse (-)
16704532 .. 16705688
1157 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13090.t1

Sequence Viewer

Length: 1071 bp
ATGAAGAAAACCAAACTTTCCCGCCACCACCAACCACCCAACATTGACATCCCTCCAAACCAAGAACCTCAAGAAGAAGAAGGAGAGCATCACATTCTCAAACTGCCAAACCGCGTTGTGCTAGAGTTCTTCTGCAAGATCCCAACAAAATGGCTCGCCCAATGCAAGTGTGTGTGCAAGTCTTGGCGCCGGTTGCTCTCCGACCCTCATTTCACCAAAGCCCTCCTTGCACGAACACCCACTTACCTTCTGCTCCGAGACACTTGTTACGTCAAGAGCCTGGTCATCTTCGACTTCGAAAAAGCCTCCAACAGAAAAATGTCGGACTTCTACGACGTGCCCAAAACCCAAGACGACTGCTTGGCCAAGCTCTCCGGAGACCCGAATGGCCTCATCTCCATGGAGGCCGTGGTCATCGGTTCATGCAATGGCTTCCTCTGCATACACAATGACTGGCCTGACCCTTGGCGTCTTTACATCTACAACCCCATTACTGGTGAGTCTCTGACTCTTCCGACCCCTAAGATGAGATGCTCGGAGGTGAAGGTCATGACTGTTGGCTCTGGGGTTTGGAGAAGCATTGGGGACCTGGGGTTCAATATTTTGAAAGATTCTGATACAAATGGGGTGTTTCTTAATGGATTTCTTCACTGGGTTGGTGAGTCTCGCAATGGTTCTGTTTCGATATTTGCCTTTGATGTCGAAAATGAGCGCTTTCTGGAGTTGCCAACACCTCCAAGTGCTTCAGAATTCAAGACCATTAGAATCTTCAATGGTTGGCTGTCCGTATTTGTTAAAAGCCGAGGTGTGATCAGTGTTTGGGTGATGAAGGATTATGGTGTTGAGGGGTCTTGGACAAAAGAGCTTGAAATTGAAAAGGCAGGTGATTCTCGAATCTTGATGTCTACAAAGAAGGGGCAAGTGGTGATGGTACGTCATTGGGAAATTCACACTTATGATCTTGGAACAAAGAGATATACATGGATTCCTGTGAATGGGTTACCATTAGTGTTTCAAGAAATTGCACATACTCCCAGCTTTGTTTTGCTGAAAGACATCGTCAAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

357

Amino Acids

40.65

Weight (kDa)

8.47

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 32 - 70 3.9e-07 F-box-like
F-box PF00646 32 - 72 9.7e-06 F-box domain
FBA_3 PF08268 178 - 311 2.2e-10 F-box associated beta propeller domain
FBA_1 PF07734 179 - 293 2.4e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 872
Acc36I ACCTGC 1 cut(s) 872
AccB1I GGYRCC 1 cut(s) 186
AccI GTMKAC 1 cut(s) 905
AccII CGCG 1 cut(s) 114
AccIII TCCGGA 1 cut(s) 374
AciI CCGC 2 cut(s) 22, 112
AclWI GGATC 1 cut(s) 133
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 2 cut(s) 749, 945
AcuI CTGAAG 1 cut(s) 729
AcyI GRCGYC 2 cut(s) 187, 469
AfaI GTAC 1 cut(s) 933
AfeI AGCGCT 1 cut(s) 713
AfiI CCNNNNNNNGG 2 cut(s) 494, 995
AgsI TTSAA 7 cut(s) 598, 607, 754, 772, 869, 875, 1016
AjiI CACGTC 1 cut(s) 337
AjnI CCWGG 2 cut(s) 279, 588
AloI GAACNNNNNNTCC 2 cut(s) 578, 610
AluBI AGCT 3 cut(s) 370, 865, 1038
AluI AGCT 3 cut(s) 370, 865, 1038
Alw26I GTCTC 4 cut(s) 252, 372, 507, 669
AlwI GGATC 1 cut(s) 133
Aor13HI TCCGGA 1 cut(s) 374
Aor51HI AGCGCT 1 cut(s) 713
AoxI GGCC 4 cut(s) 363, 388, 405, 455
ApoI RAATTY 2 cut(s) 749, 945
AspLEI GCGC 2 cut(s) 189, 714
AspS9I GGNCC 1 cut(s) 586
AsuHPI GGTGA 7 cut(s) 205, 509, 553, 671, 835, 896, 937
AsuII TTCGAA 1 cut(s) 297
AvaII GGWCC 1 cut(s) 586
BaeGI GKGCMC 1 cut(s) 342
BalI TGGCCA 1 cut(s) 365
BanI GGYRCC 1 cut(s) 186
BccI CCATC 1 cut(s) 922
BceAI ACGGC 1 cut(s) 392
BciT130I CCWGG 2 cut(s) 281, 590
BclI TGATCA 1 cut(s) 810
BcoDI GTCTC 4 cut(s) 252, 372, 507, 669
BfaI CTAG 1 cut(s) 122
BfoI RGCGCY 2 cut(s) 190, 715
BfuAI ACCTGC 1 cut(s) 872
Bme1390I CCNGG 2 cut(s) 281, 590
Bme18I GGWCC 1 cut(s) 586
BmgBI CACGTC 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 586
BmiI GGNNCC 2 cut(s) 188, 587
BmrFI CCNGG 2 cut(s) 281, 590
BmrI ACTGGG 1 cut(s) 661
BmsI GCATC 2 cut(s) 97, 521
BmuI ACTGGG 1 cut(s) 661
BpmI CTGGAG 1 cut(s) 740
Bpu14I TTCGAA 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 54
BsaHI GRCGYC 2 cut(s) 187, 469
BsaI GGTCTC 1 cut(s) 372
BsaJI CCNNGG 5 cut(s) 399, 408, 464, 589, 802
BsaWI WCCGGW 1 cut(s) 374
Bsc4I CCNNNNNNNGG 2 cut(s) 494, 995
Bse118I RCCGGY 1 cut(s) 189
Bse1I ACTGG 3 cut(s) 458, 499, 656
Bse3DI GCAATG 2 cut(s) 433, 676
BseAI TCCGGA 1 cut(s) 374
BseBI CCWGG 2 cut(s) 281, 590
BseDI CCNNGG 5 cut(s) 399, 408, 464, 589, 802
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 2 cut(s) 494, 995
BseMI GCAATG 2 cut(s) 433, 676
BseNI ACTGG 3 cut(s) 458, 499, 656
BseSI GKGCMC 1 cut(s) 342
BseYI CCCAGC 1 cut(s) 1034
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 4 cut(s) 365, 390, 407, 457
BshNI GGYRCC 1 cut(s) 186
BsiSI CCGG 2 cut(s) 190, 375
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 2 cut(s) 494, 995
BsmAI GTCTC 4 cut(s) 252, 372, 507, 669
BsmFI GGGAC 1 cut(s) 599
BsnI GGCC 4 cut(s) 365, 390, 407, 457
Bso31I GGTCTC 1 cut(s) 372
Bsp119I TTCGAA 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 342
Bsp13I TCCGGA 1 cut(s) 374
Bsp143I GATC 3 cut(s) 138, 810, 958
Bsp19I CCATGG 1 cut(s) 399
BspACI CCGC 2 cut(s) 22, 112
BspANI GGCC 4 cut(s) 365, 390, 407, 457
BspEI TCCGGA 1 cut(s) 374
BspFNI CGCG 1 cut(s) 114
BspHI TCATGA 1 cut(s) 549
BspLI GGNNCC 2 cut(s) 188, 587
BspMI ACCTGC 1 cut(s) 872
BspPI GGATC 1 cut(s) 133
BspT104I TTCGAA 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 372
BsrDI GCAATG 2 cut(s) 433, 676
BsrFI RCCGGY 1 cut(s) 189
BsrI ACTGG 3 cut(s) 458, 499, 656
BssAI RCCGGY 1 cut(s) 189
BssECI CCNNGG 5 cut(s) 399, 408, 464, 589, 802
BssMI GATC 3 cut(s) 138, 810, 958
BssNI GRCGYC 2 cut(s) 187, 469
BssT1I CCWWGG 2 cut(s) 399, 464
Bst2UI CCWGG 2 cut(s) 281, 590
Bst4CI ACNGT 1 cut(s) 556
Bst6I CTCTTC 1 cut(s) 516
BstACI GRCGYC 2 cut(s) 187, 469
BstBI TTCGAA 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 522
BstDSI CCRYGG 2 cut(s) 399, 408
BstEII GGTNACC 1 cut(s) 999
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 114
BstH2I RGCGCY 2 cut(s) 190, 715
BstHHI GCGC 2 cut(s) 189, 714
BstKTI GATC 3 cut(s) 141, 813, 961
BstMAI GTCTC 4 cut(s) 252, 372, 507, 669
BstMBI GATC 3 cut(s) 138, 810, 958
BstMWI GCNNNNNNNGC 3 cut(s) 193, 227, 438
BstNI CCWGG 2 cut(s) 281, 590
BstPI GGTNACC 1 cut(s) 999
BstSCI CCNGG 2 cut(s) 279, 588
BstSLI GKGCMC 1 cut(s) 342
BstUI CGCG 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 138
BstXI CCANNNNNNTGG 1 cut(s) 150
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 4 cut(s) 365, 390, 407, 457
BtgI CCRYGG 2 cut(s) 399, 408
BtrI CACGTC 1 cut(s) 337
BtsCI GGATG 1 cut(s) 48
BtsIMutI CAGTG 2 cut(s) 649, 820
BveI ACCTGC 1 cut(s) 872
Cac8I GCNNGC 1 cut(s) 156
CciI TCATGA 1 cut(s) 549
CfoI GCGC 2 cut(s) 189, 714
Cfr10I RCCGGY 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 586
CseI GACGC 1 cut(s) 458
Csp6I GTAC 1 cut(s) 932
CviAII CATG 4 cut(s) 400, 423, 550, 981
CviQI GTAC 1 cut(s) 932
DdeI CTNAG 1 cut(s) 522
DinI GGCGCC 1 cut(s) 188
DpnI GATC 3 cut(s) 140, 812, 960
DpnII GATC 3 cut(s) 138, 810, 958
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
Eco130I CCWWGG 2 cut(s) 399, 464
Eco31I GGTCTC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 586
Eco47III AGCGCT 1 cut(s) 713
Eco57I CTGAAG 1 cut(s) 729
Eco91I GGTNACC 1 cut(s) 999
EcoO109I RGGNCCY 1 cut(s) 586
EcoO65I GGTNACC 1 cut(s) 999
EcoRI GAATTC 1 cut(s) 749
EcoRII CCWGG 2 cut(s) 279, 588
EcoT14I CCWWGG 2 cut(s) 399, 464
EgeI GGCGCC 1 cut(s) 188
EheI GGCGCC 1 cut(s) 188
ErhI CCWWGG 2 cut(s) 399, 464
FaeI CATG 4 cut(s) 403, 426, 553, 984
FaiI YATR 9 cut(s) 401, 424, 443, 551, 837, 957, 978, 982, 1029
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FaqI GGGAC 1 cut(s) 599
FatI CATG 4 cut(s) 399, 422, 549, 980
FauI CCCGC 1 cut(s) 29
FbaI TGATCA 1 cut(s) 810
FblI GTMKAC 1 cut(s) 905
FokI GGATG 1 cut(s) 35
FspBI CTAG 1 cut(s) 122
GlaI GCGC 2 cut(s) 188, 713
GsaI CCCAGC 1 cut(s) 1038
GsuI CTGGAG 1 cut(s) 740
HaeII RGCGCY 2 cut(s) 190, 715
HaeIII GGCC 4 cut(s) 365, 390, 407, 457
HapII CCGG 2 cut(s) 190, 375
HgaI GACGC 1 cut(s) 458
HhaI GCGC 2 cut(s) 189, 714
Hin1I GRCGYC 2 cut(s) 187, 469
Hin1II CATG 4 cut(s) 403, 426, 553, 984
Hin6I GCGC 2 cut(s) 187, 712
HinP1I GCGC 2 cut(s) 187, 712
HinfI GANTC 8 cut(s) 500, 508, 611, 662, 765, 887, 894, 985
HpaII CCGG 2 cut(s) 190, 375
HphI GGTGA 7 cut(s) 205, 509, 553, 671, 835, 896, 937
Hpy166II GTNNAC 1 cut(s) 906
Hpy188I TCNGA 8 cut(s) 202, 257, 325, 507, 516, 538, 616, 748
Hpy188III TCNNGA 9 cut(s) 71, 274, 375, 550, 719, 754, 891, 898, 1016
Hpy8I GTNNAC 1 cut(s) 906
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 5 cut(s) 74, 257, 538, 823, 907
HpyCH4III ACNGT 1 cut(s) 556
HpyCH4IV ACGT 3 cut(s) 270, 336, 934
HpyCH4V TGCA 7 cut(s) 135, 165, 177, 230, 426, 441, 1025
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 227, 438
HpyF3I CTNAG 1 cut(s) 522
HpySE526I ACGT 3 cut(s) 270, 336, 934
Hsp92I GRCGYC 2 cut(s) 187, 469
Hsp92II CATG 4 cut(s) 403, 426, 553, 984
HspAI GCGC 2 cut(s) 187, 712
KasI GGCGCC 1 cut(s) 186
Kpn2I TCCGGA 1 cut(s) 374
Ksp22I TGATCA 1 cut(s) 810
Kzo9I GATC 3 cut(s) 138, 810, 958
LmnI GCTCC 1 cut(s) 258
LweI GCATC 2 cut(s) 97, 521
MaeI CTAG 1 cut(s) 122
MaeII ACGT 3 cut(s) 270, 336, 934
MaeIII GTNAC 2 cut(s) 266, 999
MalI GATC 3 cut(s) 140, 812, 960
MboI GATC 3 cut(s) 138, 810, 958
MboII GAAGA 8 cut(s) 16, 86, 89, 121, 280, 503, 638, 760
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 1 cut(s) 342
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 4 cut(s) 749, 870, 945, 1020
MluNI TGGCCA 1 cut(s) 365
Mly113I GGCGCC 1 cut(s) 187
MlyI GAGTC 3 cut(s) 502, 509, 671
MmeI TCCRAC 4 cut(s) 225, 303, 333, 539
Mox20I TGGCCA 1 cut(s) 365
MroI TCCGGA 1 cut(s) 374
MscI TGGCCA 1 cut(s) 365
MseI TTAA 2 cut(s) 636, 795
MslI CAYNNNNRTG 2 cut(s) 398, 954
Msp20I TGGCCA 1 cut(s) 365
MspI CCGG 2 cut(s) 190, 375
MspR9I CCNGG 2 cut(s) 281, 590
MvaI CCWGG 2 cut(s) 281, 590
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 193, 227, 438
NarI GGCGCC 1 cut(s) 187
NcoI CCATGG 1 cut(s) 399
NdeII GATC 3 cut(s) 138, 810, 958
NlaIII CATG 4 cut(s) 403, 426, 553, 984
NlaIV GGNNCC 2 cut(s) 188, 587
NmeAIII GCCGAG 1 cut(s) 827
NspV TTCGAA 1 cut(s) 297
PagI TCATGA 1 cut(s) 549
PaqCI CACCTGC 1 cut(s) 872
PfeI GAWTC 5 cut(s) 611, 765, 887, 894, 985
PflFI GACNNNGTC 1 cut(s) 1058
PleI GAGTC 3 cut(s) 502, 508, 670
PluTI GGCGCC 1 cut(s) 190
PpsI GAGTC 3 cut(s) 502, 508, 670
PpuMI RGGWCCY 1 cut(s) 586
Psp5II RGGWCCY 1 cut(s) 586
Psp6I CCWGG 2 cut(s) 279, 588
PspEI GGTNACC 1 cut(s) 999
PspFI CCCAGC 1 cut(s) 1034
PspGI CCWGG 2 cut(s) 279, 588
PspN4I GGNNCC 2 cut(s) 188, 587
PspPI GGNCC 1 cut(s) 586
PspPPI RGGWCCY 1 cut(s) 586
PsuI RGATCY 1 cut(s) 138
PsyI GACNNNGTC 1 cut(s) 1058
RsaI GTAC 1 cut(s) 933
RsaNI GTAC 1 cut(s) 932
RseI CAYNNNNRTG 2 cut(s) 398, 954
SaqAI TTAA 2 cut(s) 636, 795
Sau3AI GATC 3 cut(s) 138, 810, 958
Sau96I GGNCC 1 cut(s) 586
SchI GAGTC 3 cut(s) 502, 509, 671
ScrFI CCNGG 2 cut(s) 281, 590
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 2 cut(s) 97, 521
SfoI GGCGCC 1 cut(s) 188
SfuI TTCGAA 1 cut(s) 297
SinI GGWCC 1 cut(s) 586
SmiMI CAYNNNNRTG 2 cut(s) 398, 954
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 4 cut(s) 749, 870, 945, 1020
SsiI CCGC 2 cut(s) 22, 112
SspDI GGCGCC 1 cut(s) 186
SspI AATATT 1 cut(s) 601
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 279, 588
StyI CCWWGG 2 cut(s) 399, 464
TaaI ACNGT 1 cut(s) 556
TaiI ACGT 3 cut(s) 273, 339, 937
TaqI TCGA 5 cut(s) 291, 297, 683, 702, 892
TasI AATT 4 cut(s) 749, 870, 945, 1020
TfiI GAWTC 5 cut(s) 611, 765, 887, 894, 985
Tru1I TTAA 2 cut(s) 636, 795
Tru9I TTAA 2 cut(s) 636, 795
TscAI CASTG 2 cut(s) 656, 820
TspDTI ATGAA 3 cut(s) 17, 411, 842
TspGWI ACGGA 1 cut(s) 775
TspRI CASTG 2 cut(s) 656, 820
Tth111I GACNNNGTC 1 cut(s) 1058
VpaK11BI GGWCC 1 cut(s) 586
XapI RAATTY 2 cut(s) 749, 945
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 905
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.