Rmu_sc0001755.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001755.1
OG0000430
Physical Location & Seq
Reverse (-)
50375 .. 51328
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001755.1_g000010.1.cds

Sequence Viewer

Length: 567 bp
atgcttaatattgaagttctgaagcttataaaggggaaaaaagctccgaaaaaagctttagtattagacgactttagattgagcctttatacccctgcaacaaggtcccttttgagggttcaaattgatgggatgcctagcatggcttggaaggatgtgccaggtgtccatattccaagctttgtttcacctaaagacattatcagggattacatctccaagcatccagaggaagtagctgaaacatctgatgttgtgggatggggagagaacgatgagagcgaggtagttgagattccaagaggccagccaaccccatgcctgccactcccaaaggaccttaaacatttaagtgtagctacagcttcgacgctactggatatgattagtggcttgaatgcccttctattgcataagtgcatggtgggaaaagatgagatcaaaaggcttaggaaggagaatgaagagctccgtgcaagtgtacagctgctttcgggaaggccagatgatggtgaaggtgatttcatatgtcatgttcgtgagccacaacctgaggaggataactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.97

Weight (kDa)

5.43

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 29
AccB7I CCANNNNNTGG 1 cut(s) 509
AcuI CTGAAG 1 cut(s) 41
AfaI GTAC 1 cut(s) 483
AfiI CCNNNNNNNGG 3 cut(s) 114, 115, 509
AgsI TTSAA 3 cut(s) 14, 122, 397
AjnI CCWGG 1 cut(s) 160
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 9 cut(s) 25, 44, 56, 180, 239, 359, 365, 469, 487
AluI AGCT 9 cut(s) 25, 44, 56, 180, 239, 359, 365, 469, 487
Alw21I GWGCWC 1 cut(s) 471
AoxI GGCC 2 cut(s) 304, 500
ApeKI GCWGC 1 cut(s) 487
AspS9I GGNCC 2 cut(s) 105, 337
AsuHPI GGTGA 3 cut(s) 180, 524, 530
AvaII GGWCC 2 cut(s) 105, 337
AxyI CCTNAGG 1 cut(s) 552
BanII GRGCYC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 1 cut(s) 474
BccI CCATC 3 cut(s) 122, 255, 503
BciT130I CCWGG 1 cut(s) 162
BfaI CTAG 2 cut(s) 138, 565
BfmI CTRYAG 1 cut(s) 360
BisI GCNGC 1 cut(s) 488
BlsI GCNGC 1 cut(s) 489
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 2 cut(s) 105, 337
BmgT120I GGNCC 2 cut(s) 105, 337
BmiI GGNNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 2 cut(s) 123, 232
Bpu10I CCTNAGC 1 cut(s) 449
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 115, 509
Bse1I ACTGG 1 cut(s) 381
Bse21I CCTNAGG 1 cut(s) 552
BseBI CCWGG 1 cut(s) 162
BseGI GGATG 4 cut(s) 138, 160, 223, 266
BseLI CCNNNNNNNGG 3 cut(s) 114, 115, 509
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 1 cut(s) 381
BseXI GCAGC 1 cut(s) 474
BshFI GGCC 2 cut(s) 306, 502
BsiHKAI GWGCWC 1 cut(s) 471
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 3 cut(s) 114, 115, 509
BsmFI GGGAC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 2 cut(s) 306, 502
Bsp1286I GDGCHC 1 cut(s) 471
Bsp1407I TGTACA 1 cut(s) 481
Bsp143I GATC 1 cut(s) 438
BspANI GGCC 2 cut(s) 306, 502
BspCNI CTCAG 1 cut(s) 544
BspLI GGNNCC 1 cut(s) 107
BspQI GCTCTTC 1 cut(s) 459
BsrGI TGTACA 1 cut(s) 481
BsrI ACTGG 1 cut(s) 381
BssMI GATC 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 459
BstAUI TGTACA 1 cut(s) 481
BstC8I GCNNGC 2 cut(s) 308, 323
BstDEI CTNAG 2 cut(s) 449, 552
BstF5I GGATG 4 cut(s) 138, 160, 223, 266
BstKTI GATC 1 cut(s) 441
BstMBI GATC 1 cut(s) 438
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 474
Bsu36I CCTNAGG 1 cut(s) 552
BsuRI GGCC 2 cut(s) 306, 502
BtsCI GGATG 4 cut(s) 138, 160, 223, 266
Cac8I GCNNGC 2 cut(s) 308, 323
Cfr13I GGNCC 2 cut(s) 105, 337
CseI GACGC 1 cut(s) 379
Csp6I GTAC 1 cut(s) 482
CviAII CATG 4 cut(s) 142, 318, 421, 533
CviQI GTAC 1 cut(s) 482
DdeI CTNAG 2 cut(s) 449, 552
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Ecl136II GAGCTC 1 cut(s) 469
Eco24I GRGCYC 1 cut(s) 471
Eco47I GGWCC 2 cut(s) 105, 337
Eco53kI GAGCTC 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 41
Eco81I CCTNAGG 1 cut(s) 552
EcoICRI GAGCTC 1 cut(s) 469
EcoO109I RGGNCCY 2 cut(s) 105, 337
EcoRII CCWGG 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 471
FaeI CATG 4 cut(s) 145, 321, 424, 536
FaqI GGGAC 1 cut(s) 91
FatI CATG 4 cut(s) 141, 317, 420, 532
FauNDI CATATG 1 cut(s) 527
Fnu4HI GCNGC 1 cut(s) 488
FokI GGATG 4 cut(s) 145, 167, 210, 273
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 1 cut(s) 488
FspBI CTAG 2 cut(s) 138, 565
GluI GCNGC 1 cut(s) 488
HaeIII GGCC 2 cut(s) 306, 502
HgaI GACGC 1 cut(s) 379
Hin1II CATG 4 cut(s) 145, 321, 424, 536
HindIII AAGCTT 3 cut(s) 23, 54, 178
HinfI GANTC 1 cut(s) 295
HphI GGTGA 3 cut(s) 180, 524, 530
Hpy166II GTNNAC 1 cut(s) 482
Hpy188I TCNGA 3 cut(s) 21, 48, 250
Hpy188III TCNNGA 3 cut(s) 227, 495, 539
Hpy8I GTNNAC 1 cut(s) 482
Hpy99I CGWCG 1 cut(s) 373
HpyAV CCTTC 5 cut(s) 145, 413, 448, 492, 509
HpyCH4V TGCA 4 cut(s) 98, 412, 420, 476
HpyF3I CTNAG 2 cut(s) 449, 552
Hsp92II CATG 4 cut(s) 145, 321, 424, 536
Kzo9I GATC 1 cut(s) 438
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 2 cut(s) 49, 474
LpnPI CCDG 9 cut(s) 108, 147, 174, 190, 240, 320, 335, 362, 516
Lsp1109I GCAGC 1 cut(s) 474
LweI GCATC 2 cut(s) 123, 232
MaeI CTAG 2 cut(s) 138, 565
MalI GATC 1 cut(s) 440
MboI GATC 1 cut(s) 438
MboII GAAGA 1 cut(s) 476
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 1 cut(s) 123
MnlI CCTC 6 cut(s) 108, 223, 277, 296, 547, 550
MseI TTAA 3 cut(s) 6, 342, 350
MslI CAYNNNNRTG 2 cut(s) 351, 537
MspA1I CMGCKG 1 cut(s) 487
MspR9I CCNGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 1 cut(s) 162
NdeI CATATG 1 cut(s) 527
NdeII GATC 1 cut(s) 438
NlaIII CATG 4 cut(s) 145, 321, 424, 536
NlaIV GGNNCC 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PctI GAATGC 1 cut(s) 403
PfeI GAWTC 1 cut(s) 295
PflMI CCANNNNNTGG 1 cut(s) 509
PkrI GCNGC 1 cut(s) 489
PpuMI RGGWCCY 2 cut(s) 105, 337
PsiI TTATAA 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 471
Psp5II RGGWCCY 2 cut(s) 105, 337
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 107
PspPI GGNCC 2 cut(s) 105, 337
PspPPI RGGWCCY 2 cut(s) 105, 337
PvuII CAGCTG 1 cut(s) 487
RsaI GTAC 1 cut(s) 483
RsaNI GTAC 1 cut(s) 482
RseI CAYNNNNRTG 2 cut(s) 351, 537
SacI GAGCTC 1 cut(s) 471
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 3 cut(s) 6, 342, 350
SatI GCNGC 1 cut(s) 488
Sau3AI GATC 1 cut(s) 438
Sau96I GGNCC 2 cut(s) 105, 337
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 1 cut(s) 471
SfaNI GCATC 2 cut(s) 123, 232
SfcI CTRYAG 1 cut(s) 360
SinI GGWCC 2 cut(s) 105, 337
SmiMI CAYNNNNRTG 2 cut(s) 351, 537
Sse9I AATT 1 cut(s) 123
SspI AATATT 1 cut(s) 10
SspMI CTAG 2 cut(s) 138, 565
SstI GAGCTC 1 cut(s) 471
StyD4I CCNGG 1 cut(s) 160
TaqI TCGA 1 cut(s) 368
TasI AATT 1 cut(s) 123
TatI WGTACW 1 cut(s) 481
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 3 cut(s) 6, 342, 350
Tru9I TTAA 3 cut(s) 6, 342, 350
TseI GCWGC 1 cut(s) 487
TspDTI ATGAA 2 cut(s) 477, 514
TspGWI ACGGA 1 cut(s) 461
Van91I CCANNNNNTGG 1 cut(s) 509
VpaK11BI GGWCC 2 cut(s) 105, 337
XspI CTAG 2 cut(s) 138, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.