Rroxscaffold_5G00356800

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000430
Physical Location & Seq
Forward (+)
36171324 .. 36172493
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00356800.1

Sequence Viewer

Length: 1170 bp
ATGAAGAAAATCAAACTCAATCAAACCCACCAAGCAACCCACACTGACCAACAAGAAGAAGAGCATGATAATCAATCCCACATTTTCCACCTTCCAAACCACATAATACTGGATATCTTCTCAAGAATCCCAATCAAAACCCTCATCCAATGCCGCTCTGTGTGCAAGTCATGGCGTCGTTCACTCTCGGACTCCCACTTCACCAAGTCCCTGTTTTCCCAAACACCCGCTTGCATTTTGCTCCAGAATAGCAGCACCATCAACTCAAAATCCCCAAGCCTCTTCTTGATCGATCTAGACAAGGCCTCTGGCAGGAAGGACGTCGTAATTAGGCTCCCCAAAGACCCCAGTGTCCCAACTCGGGGTGTGCAAGTTGTGGGTTCCTGCAATGGCCTGCTCTGCATGTATGATAGGCTCAACTGTGGCCAACTTTATATCTCCAACCCCATTATCGGTGTCTCTTTAACACTTCCAGCACCTAGTATGGAAATTGATTATCAGTTTGTTTGTGGGTTTGGATTTTGTCCTAGTAATGAGGTTTATAAAGTAGTTGTGGTTACTTCTCCAAGTGAAGGAACTGATCATGGAGAGGTAAAGGTTTTTACTGTTGGGTCCAGGGTTTGGAGAAGCATTGGGAATTGTGTGTACCATTTTGGTTACCAACCATATGGGGTTTATCTGAATGGGTTTCTTCATTGGATTGTTCAAACTAGTGAGGGTTCTGTTTCGATTTGTGCCTTTGACATTGAAAATGAGAGTTTCCGAGAGCTGCCACCGCCGCCTTGTTCTTTGAAAAAATGTGTCATTAGCATTGGAGTGCTGGAAGGTTGGCTCTCTGTGTTTGGTCGGTCCAGAAGTAACATGAATGTGTGGATGATGAAAGATTATGGGGTTGAGGAGTCTTGGACCAAAGAGCTTGTTGTCAAAGAAAAATCGTCTGGCATGATTGGGAAATTGTTTGGTCACTCGACTCGATCTTCTTCTGCTGCTCAAGTGTTGAAGTTTACAAAGAAGGGGCAAGTCTTGCTGTTGGACAAGTATAAACTGCATGTTTATACTCCTGGAAAAAGGGGTTTTGTACCACTTGAGATTGATGGGGTACCATATATGGTTGAAGCATTTGCCCATATTCCTAGCTTTATTTCGCTTGCCAATGGCATTAGGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

389

Amino Acids

43.47

Weight (kDa)

8.82

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 28 - 69 2e-09 F-box domain
F-box-like PF12937 29 - 71 2.7e-10 F-box-like
Beta-prop_KIB1-4 PF03478 109 - 270 4.2e-08 KIB1-4 beta-propeller
FBA_1 PF07734 120 - 309 9.5e-22 F-box associated beta propeller domain
FBA_3 PF08268 121 - 313 1.8e-22 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AasI GACNNNNNNGTC 1 cut(s) 350
AatII GACGTC 1 cut(s) 324
Acc65I GGTACC 1 cut(s) 1099
AccB1I GGYRCC 1 cut(s) 1099
AccB7I CCANNNNNTGG 1 cut(s) 621
AccBSI CCGCTC 1 cut(s) 156
AciI CCGC 4 cut(s) 154, 228, 776, 779
AcoI YGGCCR 1 cut(s) 424
AcyI GRCGYC 2 cut(s) 175, 321
AfaI GTAC 3 cut(s) 647, 1080, 1101
AfiI CCNNNNNNNGG 6 cut(s) 312, 361, 362, 452, 572, 621
AgsI TTSAA 5 cut(s) 707, 749, 793, 1000, 1115
AhlI ACTAGT 1 cut(s) 710
AjnI CCWGG 2 cut(s) 614, 1060
AluBI AGCT 3 cut(s) 769, 916, 1137
AluI AGCT 3 cut(s) 769, 916, 1137
Alw26I GTCTC 1 cut(s) 463
Ama87I CYCGRG 1 cut(s) 360
AoxI GGCC 3 cut(s) 303, 391, 424
ApeKI GCWGC 3 cut(s) 252, 769, 986
Asp718I GGTACC 1 cut(s) 1099
AspS9I GGNCC 3 cut(s) 612, 849, 906
AsuHPI GGTGA 1 cut(s) 193
AvaI CYCGRG 1 cut(s) 360
AvaII GGWCC 3 cut(s) 612, 849, 906
BalI TGGCCA 1 cut(s) 426
BanI GGYRCC 1 cut(s) 1099
BbvI GCAGC 3 cut(s) 264, 756, 973
BccI CCATC 2 cut(s) 266, 1088
BciT130I CCWGG 2 cut(s) 616, 1062
BclI TGATCA 1 cut(s) 580
BcoDI GTCTC 1 cut(s) 463
BcuI ACTAGT 1 cut(s) 710
BfaI CTAG 5 cut(s) 296, 480, 528, 711, 1134
BisI GCNGC 5 cut(s) 154, 253, 770, 779, 987
BlsI GCNGC 5 cut(s) 155, 254, 771, 780, 988
Bme1390I CCNGG 2 cut(s) 616, 1062
Bme18I GGWCC 3 cut(s) 612, 849, 906
BmeT110I CYCGRG 1 cut(s) 360
BmgT120I GGNCC 3 cut(s) 612, 849, 906
BmiI GGNNCC 4 cut(s) 335, 382, 613, 1101
BmrFI CCNGG 2 cut(s) 616, 1062
BmrI ACTGGG 1 cut(s) 342
BmuI ACTGGG 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 3 cut(s) 106, 975, 1106
Bsa29I ATCGAT 1 cut(s) 291
BsaHI GRCGYC 2 cut(s) 175, 321
BsaJI CCNNGG 1 cut(s) 615
Bsc4I CCNNNNNNNGG 6 cut(s) 312, 361, 362, 452, 572, 621
Bse1I ACTGG 2 cut(s) 114, 348
Bse3DI GCAATG 1 cut(s) 394
BseBI CCWGG 2 cut(s) 616, 1062
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 615
BseGI GGATG 2 cut(s) 144, 879
BseLI CCNNNNNNNGG 6 cut(s) 312, 361, 362, 452, 572, 621
BseMI GCAATG 1 cut(s) 394
BseNI ACTGG 2 cut(s) 114, 348
BseRI GAGGAG 1 cut(s) 911
BseXI GCAGC 3 cut(s) 264, 756, 973
BshFI GGCC 3 cut(s) 305, 393, 426
BshNI GGYRCC 1 cut(s) 1099
BshVI ATCGAT 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 360
BslFI GGGAC 2 cut(s) 193, 338
BslI CCNNNNNNNGG 6 cut(s) 312, 361, 362, 452, 572, 621
BsmAI GTCTC 1 cut(s) 463
BsmFI GGGAC 2 cut(s) 193, 338
BsnI GGCC 3 cut(s) 305, 393, 426
BsoBI CYCGRG 1 cut(s) 360
Bsp143I GATC 4 cut(s) 288, 292, 580, 974
BspACI CCGC 4 cut(s) 154, 228, 776, 779
BspANI GGCC 3 cut(s) 305, 393, 426
BspDI ATCGAT 1 cut(s) 291
BspLI GGNNCC 4 cut(s) 335, 382, 613, 1101
BspQI GCTCTTC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 1099
BsrBI CCGCTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 394
BsrI ACTGG 2 cut(s) 114, 348
BssECI CCNNGG 1 cut(s) 615
BssMI GATC 4 cut(s) 288, 292, 580, 974
BssNI GRCGYC 2 cut(s) 175, 321
Bst2UI CCWGG 2 cut(s) 616, 1062
Bst4CI ACNGT 2 cut(s) 422, 607
Bst6I CTCTTC 2 cut(s) 54, 287
BstACI GRCGYC 2 cut(s) 175, 321
BstAPI GCANNNNNTGC 1 cut(s) 1024
BstC8I GCNNGC 3 cut(s) 232, 395, 1149
BstEII GGTNACC 1 cut(s) 656
BstENI CCTNNNNNAGG 1 cut(s) 310
BstF5I GGATG 2 cut(s) 144, 879
BstKTI GATC 4 cut(s) 291, 295, 583, 977
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 4 cut(s) 288, 292, 580, 974
BstMWI GCNNNNNNNGC 5 cut(s) 162, 399, 775, 778, 1024
BstNI CCWGG 2 cut(s) 616, 1062
BstNSI RCATGY 2 cut(s) 406, 1052
BstPI GGTNACC 1 cut(s) 656
BstSCI CCNGG 2 cut(s) 614, 1060
BstV1I GCAGC 3 cut(s) 264, 756, 973
BstXI CCANNNNNNTGG 1 cut(s) 668
Bsu15I ATCGAT 1 cut(s) 291
BsuRI GGCC 3 cut(s) 305, 393, 426
BsuTUI ATCGAT 1 cut(s) 291
BtsCI GGATG 2 cut(s) 144, 879
BtsIMutI CAGTG 2 cut(s) 42, 355
Cac8I GCNNGC 3 cut(s) 232, 395, 1149
Cfr13I GGNCC 3 cut(s) 612, 849, 906
ClaI ATCGAT 1 cut(s) 291
CseI GACGC 1 cut(s) 164
Csp6I GTAC 3 cut(s) 646, 1079, 1100
CviAII CATG 7 cut(s) 65, 171, 403, 584, 862, 943, 1049
CviQI GTAC 3 cut(s) 646, 1079, 1100
DpnI GATC 4 cut(s) 290, 294, 582, 976
DpnII GATC 4 cut(s) 288, 292, 580, 974
DrdI GACNNNNNNGTC 1 cut(s) 350
DseDI GACNNNNNNGTC 1 cut(s) 350
EaeI YGGCCR 1 cut(s) 424
Eam1104I CTCTTC 2 cut(s) 54, 287
EarI CTCTTC 2 cut(s) 54, 287
Eco147I AGGCCT 1 cut(s) 305
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 3 cut(s) 612, 849, 906
Eco88I CYCGRG 1 cut(s) 360
Eco91I GGTNACC 1 cut(s) 656
EcoNI CCTNNNNNAGG 1 cut(s) 310
EcoO65I GGTNACC 1 cut(s) 656
EcoRII CCWGG 2 cut(s) 614, 1060
EcoRV GATATC 1 cut(s) 115
FaeI CATG 7 cut(s) 68, 174, 406, 587, 865, 946, 1052
FaqI GGGAC 2 cut(s) 193, 338
FatI CATG 7 cut(s) 64, 170, 402, 583, 861, 942, 1048
FauI CCCGC 1 cut(s) 235
FauNDI CATATG 1 cut(s) 667
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 5 cut(s) 154, 253, 770, 779, 987
FokI GGATG 2 cut(s) 131, 886
Fsp4HI GCNGC 5 cut(s) 154, 253, 770, 779, 987
FspBI CTAG 5 cut(s) 296, 480, 528, 711, 1134
GluI GCNGC 5 cut(s) 154, 253, 770, 779, 987
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 3 cut(s) 305, 393, 426
HgaI GACGC 1 cut(s) 164
Hin1I GRCGYC 2 cut(s) 175, 321
Hin1II CATG 7 cut(s) 68, 174, 406, 587, 865, 946, 1052
HinfI GANTC 4 cut(s) 126, 191, 899, 970
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 3 cut(s) 182, 646, 1005
Hpy188I TCNGA 3 cut(s) 190, 681, 764
Hpy188III TCNNGA 5 cut(s) 123, 244, 286, 296, 852
Hpy8I GTNNAC 3 cut(s) 182, 646, 1005
Hpy99I CGWCG 2 cut(s) 180, 326
HpyAV CCTTC 5 cut(s) 101, 310, 566, 818, 1006
HpyCH4III ACNGT 2 cut(s) 422, 607
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 6 cut(s) 165, 234, 370, 387, 402, 1048
HpyF10VI GCNNNNNNNGC 5 cut(s) 162, 399, 775, 778, 1024
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 2 cut(s) 175, 321
Hsp92II CATG 7 cut(s) 68, 174, 406, 587, 865, 946, 1052
KpnI GGTACC 1 cut(s) 1103
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 4 cut(s) 288, 292, 580, 974
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 2 cut(s) 246, 339
Lsp1109I GCAGC 3 cut(s) 264, 756, 973
MaeI CTAG 5 cut(s) 296, 480, 528, 711, 1134
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 4 cut(s) 556, 656, 857, 962
MalI GATC 4 cut(s) 290, 294, 582, 976
MbiI CCGCTC 1 cut(s) 156
MboI GATC 4 cut(s) 288, 292, 580, 974
MboII GAAGA 8 cut(s) 16, 68, 71, 109, 274, 683, 969, 972
MlsI TGGCCA 1 cut(s) 426
MluCI AATT 4 cut(s) 327, 489, 637, 953
MluNI TGGCCA 1 cut(s) 426
MlyI GAGTC 3 cut(s) 185, 908, 964
MmeI TCCRAC 2 cut(s) 465, 1011
MnlI CCTC 7 cut(s) 152, 290, 316, 529, 583, 709, 889
Mox20I TGGCCA 1 cut(s) 426
MscI TGGCCA 1 cut(s) 426
MseI TTAA 1 cut(s) 464
MslI CAYNNNNRTG 2 cut(s) 815, 866
Msp20I TGGCCA 1 cut(s) 426
MspR9I CCNGG 2 cut(s) 616, 1062
MvaI CCWGG 2 cut(s) 616, 1062
MwoI GCNNNNNNNGC 5 cut(s) 162, 399, 775, 778, 1024
NdeI CATATG 1 cut(s) 667
NdeII GATC 4 cut(s) 288, 292, 580, 974
NlaIII CATG 7 cut(s) 68, 174, 406, 587, 865, 946, 1052
NlaIV GGNNCC 4 cut(s) 335, 382, 613, 1101
NmuCI GTSAC 1 cut(s) 962
NspI RCATGY 2 cut(s) 406, 1052
PceI AGGCCT 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 126
PflMI CCANNNNNTGG 1 cut(s) 621
PfoI TCCNGGA 1 cut(s) 1060
PkrI GCNGC 5 cut(s) 155, 254, 771, 780, 988
PleI GAGTC 3 cut(s) 185, 907, 964
PpsI GAGTC 3 cut(s) 185, 907, 964
PsiI TTATAA 1 cut(s) 543
Psp6I CCWGG 2 cut(s) 614, 1060
PspEI GGTNACC 1 cut(s) 656
PspGI CCWGG 2 cut(s) 614, 1060
PspN4I GGNNCC 4 cut(s) 335, 382, 613, 1101
PspPI GGNCC 3 cut(s) 612, 849, 906
RsaI GTAC 3 cut(s) 647, 1080, 1101
RsaNI GTAC 3 cut(s) 646, 1079, 1100
RseI CAYNNNNRTG 2 cut(s) 815, 866
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 5 cut(s) 154, 253, 770, 779, 987
Sau3AI GATC 4 cut(s) 288, 292, 580, 974
Sau96I GGNCC 3 cut(s) 612, 849, 906
SchI GAGTC 3 cut(s) 185, 908, 964
ScrFI CCNGG 2 cut(s) 616, 1062
SinI GGWCC 3 cut(s) 612, 849, 906
SmiMI CAYNNNNRTG 2 cut(s) 815, 866
SmlI CTYRAG 3 cut(s) 121, 990, 1085
SmoI CTYRAG 3 cut(s) 121, 990, 1085
SpeI ACTAGT 1 cut(s) 710
Sse9I AATT 4 cut(s) 327, 489, 637, 953
SseBI AGGCCT 1 cut(s) 305
SsiI CCGC 4 cut(s) 154, 228, 776, 779
SspMI CTAG 5 cut(s) 296, 480, 528, 711, 1134
StuI AGGCCT 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 614, 1060
TaaI ACNGT 2 cut(s) 422, 607
TaiI ACGT 1 cut(s) 324
TaqI TCGA 4 cut(s) 291, 728, 968, 973
TaqII GACCGA 1 cut(s) 837
TasI AATT 4 cut(s) 327, 489, 637, 953
TauI GCSGC 2 cut(s) 156, 781
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 2 cut(s) 49, 355
TseFI GTSAC 1 cut(s) 962
TseI GCWGC 3 cut(s) 252, 769, 986
Tsp45I GTSAC 1 cut(s) 962
TspDTI ATGAA 4 cut(s) 17, 683, 878, 893
TspRI CASTG 2 cut(s) 49, 355
Van91I CCANNNNNTGG 1 cut(s) 621
VpaK11BI GGWCC 3 cut(s) 612, 849, 906
XagI CCTNNNNNAGG 1 cut(s) 310
XbaI TCTAGA 1 cut(s) 295
XceI RCATGY 2 cut(s) 406, 1052
XspI CTAG 5 cut(s) 296, 480, 528, 711, 1134
ZraI GACGTC 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.