Rh4CG185400

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000430
Physical Location & Seq
Forward (+)
39894467 .. 39895974
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG185400.1

Sequence Viewer

Length: 1221 bp
ATGCAGATCTCATACTCAGCCGTTACATTTAGAACTTTCCCCTCTCCAGCCATGAAGAAAATCAAACTCAAGCATACCCACCAAGCAACCAACACTGACCAACAAGAAGAAGAGCATGATAATCAATCCGATATTTTCCAACTTCCAAACTACATAATACTGGAGATCCTCTCCAGAATCCCAATCAAATCCCTCATCCAATGCCGCTCTGTGTGCAAGTCATGGCGTCATTCACTCTCGGACTCCCACTTCACCAAGTCTCTATTTTCCCAAACACCCACTTGCATTTTGCTCCAGAATAGCAGCACCATCAACCCAAAATCCCCAAGCCTCTTCTTGATTGATCTAGACAAGGCCTCCGGCAGGAACGACGTCGTAATTAGGCTCCCAAAAGACCCTAATGTCCCAACTCGGGGTGTGCAAGTTGTGGGTTCCTGCAATGGCCTGCTCTGCGTGTATGATAGGCTCAACTGTGGCCAACTTTATATCTCCAACCCCATTATCGGTGAGTCTTTAACACTTCCAGCACCTAGTATGGAAATTGATTATCAGTTTGTTTGTGGGTTTGGATTTTGTCCTAGTAATGAGGTTTATAAAGTAGTTGTGGTTACTTCTCCAAGTGAAGGAACTGATCATGGAGAGTTGAAGGTTTTGACTGTTGGGTCTGGGGTTTGGAGAAGCATTGGGAATTGTGTGTACCATTTTGGGTACCAACCATATGGGGTTTATCTGAATGGGGTTCTTCATTGGATTGTTCAAACTAGTGAGGGTTCTGTTTCGATTTGTGCCTTTGACATTGAAAATGAGAGTTTCCGAGAGCTGCCACCGCCGCCTTGTTGTTTGAAAAAATGTGTCATTAGCATTGGAGTCCTGGAAGGTTGGCTCTCTGTGTTTGTTCGGTCCGGAAGTAACATCAATGTGTGGATGATGAAAGATTATGGGTTTGAGGAGTCTTGGACCAAAGAGCTTGTTGTCAAAGAAAAATCGTCAGGCATGATTGGGAAATTGTTTGGTCACTGGACTCGATCTTCTTCTGCTGCTCAAGTGTTGAAGTTTACAAAGAAGGGGCAAGTCTTGCTGTTGGATAAGTATAAACTGCATGTTTATACTCCTGGGAAAAGAGGTTTTGTACCACTTGAGATTGATGGGGTACCATATATGGTTGAAGCATTTGCCCATATTCCTAGCTTTATTTCGCTTGCCAATGCCATAAGGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

406

Amino Acids

45.29

Weight (kDa)

8.33

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 45 - 86 1e-09 F-box domain
F-box-like PF12937 46 - 88 2.5e-08 F-box-like
Beta-prop_KIB1-4 PF03478 127 - 286 6.7e-08 KIB1-4 beta-propeller
FBA_3 PF08268 139 - 331 2.9e-23 F-box associated beta propeller domain
FBA_1 PF07734 140 - 326 6.5e-20 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 594
AasI GACNNNNNNGTC 2 cut(s) 401, 661
AatII GACGTC 1 cut(s) 375
Acc65I GGTACC 2 cut(s) 708, 1150
AccB1I GGYRCC 2 cut(s) 708, 1150
AccBSI CCGCTC 1 cut(s) 207
AccIII TCCGGA 1 cut(s) 902
AciI CCGC 3 cut(s) 205, 827, 830
AclWI GGATC 1 cut(s) 160
AcoI YGGCCR 1 cut(s) 475
AcyI GRCGYC 2 cut(s) 226, 372
AfaI GTAC 4 cut(s) 698, 710, 1131, 1152
AfiI CCNNNNNNNGG 5 cut(s) 363, 412, 413, 503, 623
AgsI TTSAA 6 cut(s) 646, 758, 800, 844, 1051, 1166
AhlI ACTAGT 1 cut(s) 761
AjnI CCWGG 2 cut(s) 870, 1111
AluBI AGCT 3 cut(s) 820, 967, 1188
AluI AGCT 3 cut(s) 820, 967, 1188
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 411
Aor13HI TCCGGA 1 cut(s) 902
AoxI GGCC 3 cut(s) 354, 442, 475
ApeKI GCWGC 3 cut(s) 303, 820, 1037
Asp718I GGTACC 2 cut(s) 708, 1150
AspS9I GGNCC 2 cut(s) 900, 957
AsuHPI GGTGA 2 cut(s) 244, 518
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 2 cut(s) 900, 957
BalI TGGCCA 1 cut(s) 477
BanI GGYRCC 2 cut(s) 708, 1150
BbvI GCAGC 3 cut(s) 315, 807, 1024
BccI CCATC 2 cut(s) 317, 1139
BceAI ACGGC 1 cut(s) 5
BciT130I CCWGG 2 cut(s) 872, 1113
BclI TGATCA 1 cut(s) 631
BcoDI GTCTC 1 cut(s) 264
BcuI ACTAGT 1 cut(s) 761
BfaI CTAG 5 cut(s) 347, 531, 579, 762, 1185
BglII AGATCT 1 cut(s) 6
BisI GCNGC 5 cut(s) 205, 304, 821, 830, 1038
BlsI GCNGC 5 cut(s) 206, 305, 822, 831, 1039
Bme1390I CCNGG 2 cut(s) 872, 1113
Bme18I GGWCC 2 cut(s) 900, 957
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 2 cut(s) 900, 957
BmiI GGNNCC 4 cut(s) 386, 433, 710, 1152
BmrFI CCNGG 2 cut(s) 872, 1113
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BpmI CTGGAG 4 cut(s) 30, 157, 182, 278
BpuEI CTTGAG 3 cut(s) 53, 1026, 1157
BsaHI GRCGYC 2 cut(s) 226, 372
BsaJI CCNNGG 1 cut(s) 1112
BsaWI WCCGGW 1 cut(s) 902
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 5 cut(s) 363, 412, 413, 503, 623
Bse1I ACTGG 2 cut(s) 165, 1022
Bse3DI GCAATG 1 cut(s) 445
BseAI TCCGGA 1 cut(s) 902
BseBI CCWGG 2 cut(s) 872, 1113
BseDI CCNNGG 1 cut(s) 1112
BseGI GGATG 2 cut(s) 195, 930
BseLI CCNNNNNNNGG 5 cut(s) 363, 412, 413, 503, 623
BseMI GCAATG 1 cut(s) 445
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 2 cut(s) 165, 1022
BseRI GAGGAG 1 cut(s) 962
BseXI GCAGC 3 cut(s) 315, 807, 1024
BshFI GGCC 3 cut(s) 356, 444, 477
BshNI GGYRCC 2 cut(s) 708, 1150
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 2 cut(s) 360, 903
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 5 cut(s) 363, 412, 413, 503, 623
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 3 cut(s) 356, 444, 477
BsoBI CYCGRG 1 cut(s) 411
Bsp13I TCCGGA 1 cut(s) 902
Bsp143I GATC 5 cut(s) 6, 165, 343, 631, 1025
BspACI CCGC 3 cut(s) 205, 827, 830
BspANI GGCC 3 cut(s) 356, 444, 477
BspCNI CTCAG 1 cut(s) 29
BspEI TCCGGA 1 cut(s) 902
BspLI GGNNCC 4 cut(s) 386, 433, 710, 1152
BspPI GGATC 1 cut(s) 160
BspQI GCTCTTC 1 cut(s) 105
BspT107I GGYRCC 2 cut(s) 708, 1150
BsrBI CCGCTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 445
BsrI ACTGG 2 cut(s) 165, 1022
BssECI CCNNGG 1 cut(s) 1112
BssMI GATC 5 cut(s) 6, 165, 343, 631, 1025
BssNI GRCGYC 2 cut(s) 226, 372
Bst2UI CCWGG 2 cut(s) 872, 1113
Bst4CI ACNGT 2 cut(s) 473, 658
Bst6I CTCTTC 2 cut(s) 105, 338
BstACI GRCGYC 2 cut(s) 226, 372
BstAPI GCANNNNNTGC 1 cut(s) 1075
BstC8I GCNNGC 2 cut(s) 446, 1200
BstDEI CTNAG 1 cut(s) 16
BstENI CCTNNNNNAGG 1 cut(s) 361
BstF5I GGATG 2 cut(s) 195, 930
BstKTI GATC 5 cut(s) 9, 168, 346, 634, 1028
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 5 cut(s) 6, 165, 343, 631, 1025
BstMWI GCNNNNNNNGC 5 cut(s) 213, 450, 826, 829, 1075
BstNI CCWGG 2 cut(s) 872, 1113
BstNSI RCATGY 1 cut(s) 1103
BstSCI CCNGG 2 cut(s) 870, 1111
BstV1I GCAGC 3 cut(s) 315, 807, 1024
BstX2I RGATCY 2 cut(s) 6, 165
BstXI CCANNNNNNTGG 1 cut(s) 719
BstYI RGATCY 2 cut(s) 6, 165
BsuRI GGCC 3 cut(s) 356, 444, 477
BtsCI GGATG 2 cut(s) 195, 930
BtsIMutI CAGTG 2 cut(s) 93, 1015
Cac8I GCNNGC 2 cut(s) 446, 1200
Cfr13I GGNCC 2 cut(s) 900, 957
CpoI CGGWCCG 1 cut(s) 900
CseI GACGC 1 cut(s) 215
Csp6I GTAC 4 cut(s) 697, 709, 1130, 1151
CspI CGGWCCG 1 cut(s) 900
CviAII CATG 6 cut(s) 52, 116, 222, 635, 994, 1100
CviQI GTAC 4 cut(s) 697, 709, 1130, 1151
DdeI CTNAG 1 cut(s) 16
DpnI GATC 5 cut(s) 8, 167, 345, 633, 1027
DpnII GATC 5 cut(s) 6, 165, 343, 631, 1025
DrdI GACNNNNNNGTC 2 cut(s) 401, 661
DseDI GACNNNNNNGTC 2 cut(s) 401, 661
EaeI YGGCCR 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 105, 338
EarI CTCTTC 2 cut(s) 105, 338
Eco147I AGGCCT 1 cut(s) 356
Eco47I GGWCC 2 cut(s) 900, 957
Eco88I CYCGRG 1 cut(s) 411
EcoNI CCTNNNNNAGG 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 870, 1111
FaeI CATG 6 cut(s) 55, 119, 225, 638, 997, 1103
FaqI GGGAC 1 cut(s) 389
FatI CATG 6 cut(s) 51, 115, 221, 634, 993, 1099
FauNDI CATATG 1 cut(s) 718
FbaI TGATCA 1 cut(s) 631
Fnu4HI GCNGC 5 cut(s) 205, 304, 821, 830, 1038
FokI GGATG 2 cut(s) 182, 937
Fsp4HI GCNGC 5 cut(s) 205, 304, 821, 830, 1038
FspBI CTAG 5 cut(s) 347, 531, 579, 762, 1185
GluI GCNGC 5 cut(s) 205, 304, 821, 830, 1038
GsuI CTGGAG 4 cut(s) 30, 157, 182, 278
HaeIII GGCC 3 cut(s) 356, 444, 477
HapII CCGG 2 cut(s) 360, 903
HgaI GACGC 1 cut(s) 215
Hin1I GRCGYC 2 cut(s) 226, 372
Hin1II CATG 6 cut(s) 55, 119, 225, 638, 997, 1103
HinfI GANTC 6 cut(s) 177, 242, 509, 867, 950, 1021
HpaII CCGG 2 cut(s) 360, 903
HphI GGTGA 2 cut(s) 244, 518
Hpy166II GTNNAC 2 cut(s) 697, 1056
Hpy188I TCNGA 4 cut(s) 130, 241, 732, 815
Hpy188III TCNNGA 5 cut(s) 174, 295, 337, 347, 903
Hpy8I GTNNAC 2 cut(s) 697, 1056
Hpy99I CGWCG 2 cut(s) 374, 377
HpyAV CCTTC 4 cut(s) 617, 640, 869, 1057
HpyCH4III ACNGT 2 cut(s) 473, 658
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 6 cut(s) 4, 216, 285, 421, 438, 1099
HpyF10VI GCNNNNNNNGC 5 cut(s) 213, 450, 826, 829, 1075
HpyF3I CTNAG 1 cut(s) 16
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 2 cut(s) 226, 372
Hsp92II CATG 6 cut(s) 55, 119, 225, 638, 997, 1103
Kpn2I TCCGGA 1 cut(s) 902
KpnI GGTACC 2 cut(s) 712, 1154
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 5 cut(s) 6, 165, 343, 631, 1025
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 2 cut(s) 297, 390
Lsp1109I GCAGC 3 cut(s) 315, 807, 1024
MaeI CTAG 5 cut(s) 347, 531, 579, 762, 1185
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 4 cut(s) 22, 607, 908, 1013
MalI GATC 5 cut(s) 8, 167, 345, 633, 1027
MbiI CCGCTC 1 cut(s) 207
MboI GATC 5 cut(s) 6, 165, 343, 631, 1025
MboII GAAGA 7 cut(s) 67, 119, 122, 325, 734, 1020, 1023
MflI RGATCY 2 cut(s) 6, 165
MlsI TGGCCA 1 cut(s) 477
MluCI AATT 4 cut(s) 378, 540, 688, 1004
MluNI TGGCCA 1 cut(s) 477
MlyI GAGTC 5 cut(s) 236, 518, 876, 959, 1015
MmeI TCCRAC 3 cut(s) 163, 516, 1062
MnlI CCTC 9 cut(s) 52, 179, 203, 341, 367, 580, 760, 940, 1115
Mox20I TGGCCA 1 cut(s) 477
MroI TCCGGA 1 cut(s) 902
MscI TGGCCA 1 cut(s) 477
MseI TTAA 1 cut(s) 515
MslI CAYNNNNRTG 1 cut(s) 917
Msp20I TGGCCA 1 cut(s) 477
MspI CCGG 2 cut(s) 360, 903
MspR9I CCNGG 2 cut(s) 872, 1113
MvaI CCWGG 2 cut(s) 872, 1113
MwoI GCNNNNNNNGC 5 cut(s) 213, 450, 826, 829, 1075
NdeI CATATG 1 cut(s) 718
NdeII GATC 5 cut(s) 6, 165, 343, 631, 1025
NlaIII CATG 6 cut(s) 55, 119, 225, 638, 997, 1103
NlaIV GGNNCC 4 cut(s) 386, 433, 710, 1152
NmuCI GTSAC 1 cut(s) 1013
NspI RCATGY 1 cut(s) 1103
PceI AGGCCT 1 cut(s) 356
PciSI GCTCTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 177
PfoI TCCNGGA 1 cut(s) 870
PkrI GCNGC 5 cut(s) 206, 305, 822, 831, 1039
PleI GAGTC 5 cut(s) 236, 517, 875, 958, 1015
PpsI GAGTC 5 cut(s) 236, 517, 875, 958, 1015
PsiI TTATAA 1 cut(s) 594
Psp6I CCWGG 2 cut(s) 870, 1111
PspGI CCWGG 2 cut(s) 870, 1111
PspN4I GGNNCC 4 cut(s) 386, 433, 710, 1152
PspPI GGNCC 2 cut(s) 900, 957
PsuI RGATCY 2 cut(s) 6, 165
RsaI GTAC 4 cut(s) 698, 710, 1131, 1152
RsaNI GTAC 4 cut(s) 697, 709, 1130, 1151
RseI CAYNNNNRTG 1 cut(s) 917
Rsr2I CGGWCCG 1 cut(s) 900
RsrII CGGWCCG 1 cut(s) 900
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 515
SatI GCNGC 5 cut(s) 205, 304, 821, 830, 1038
Sau3AI GATC 5 cut(s) 6, 165, 343, 631, 1025
Sau96I GGNCC 2 cut(s) 900, 957
SchI GAGTC 5 cut(s) 236, 518, 876, 959, 1015
ScrFI CCNGG 2 cut(s) 872, 1113
SetI ASST 9 cut(s) 375, 532, 591, 651, 822, 880, 969, 1126, 1190
SinI GGWCC 2 cut(s) 900, 957
SmiMI CAYNNNNRTG 1 cut(s) 917
SmlI CTYRAG 3 cut(s) 68, 1041, 1136
SmoI CTYRAG 3 cut(s) 68, 1041, 1136
SpeI ACTAGT 1 cut(s) 761
Sse9I AATT 4 cut(s) 378, 540, 688, 1004
SseBI AGGCCT 1 cut(s) 356
SsiI CCGC 3 cut(s) 205, 827, 830
SspMI CTAG 5 cut(s) 347, 531, 579, 762, 1185
StuI AGGCCT 1 cut(s) 356
StyD4I CCNGG 2 cut(s) 870, 1111
TaaI ACNGT 2 cut(s) 473, 658
TaiI ACGT 1 cut(s) 375
TaqI TCGA 2 cut(s) 779, 1024
TaqII GACCGA 1 cut(s) 888
TasI AATT 4 cut(s) 378, 540, 688, 1004
TauI GCSGC 2 cut(s) 207, 832
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 1 cut(s) 515
Tru9I TTAA 1 cut(s) 515
TscAI CASTG 2 cut(s) 100, 1022
TseFI GTSAC 1 cut(s) 1013
TseI GCWGC 3 cut(s) 303, 820, 1037
Tsp45I GTSAC 1 cut(s) 1013
TspDTI ATGAA 3 cut(s) 68, 734, 944
TspRI CASTG 2 cut(s) 100, 1022
VpaK11BI GGWCC 2 cut(s) 900, 957
XagI CCTNNNNNAGG 1 cut(s) 361
XbaI TCTAGA 1 cut(s) 346
XceI RCATGY 1 cut(s) 1103
XspI CTAG 5 cut(s) 347, 531, 579, 762, 1185
ZraI GACGTC 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.