Rh4AG175900

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000430
Physical Location & Seq
Reverse (-)
44087112 .. 44087612
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG175900.1

Sequence Viewer

Length: 501 bp
ATGAAGAAAACCAAAGTTTCCCACAGCCACCGACCATCCAACACTGACATCCCTCCAAACCAAGAAGATGAAGTAGAAGAAGAGCATCACATTCTCCGACTGCCAAACCGCATAGTGCTGGAGTTCTTCTGCAAAATCCCAACGAAATGGCTCGCCCAATGCAAGTGTGTATGCAAGTCTTGGCGCCGGTTGCTTTCCGACCCTCATTTCACCAAAAGCCTCCTTTCACGAACACCCACTTACCTTCTGCTCCGAGACACTTGTTATCTCAAGAGCCTCGTCATCTTCGACTTCGAAAAGGCATCCGACAGAAATATGTTCGAGTTCTGGGACAGGCTGAAAACCGAAGACGACTGCTTGACCAAGCTTTCTGGAGACCGCAATGCTCTCATTTCTGGCCAGGTCATCGGTTCATGCAATGGCTTCCTCTGCATATACAATGACTGGCCTAACCCTTGGCGTCTTTACATATTTACAATCCCATTACTGGTGAGTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

166

Amino Acids

19.55

Weight (kDa)

8.41

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 31 - 71 1.1e-07 F-box-like
F-box PF00646 31 - 72 2.8e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 183
AciI CCGC 2 cut(s) 109, 379
AcoI YGGCCR 1 cut(s) 397
AcyI GRCGYC 2 cut(s) 184, 460
AfiI CCNNNNNNNGG 1 cut(s) 487
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 1 cut(s) 367
AluI AGCT 1 cut(s) 367
Alw26I GTCTC 2 cut(s) 249, 369
AoxI GGCC 2 cut(s) 397, 446
AspLEI GCGC 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 202
AsuII TTCGAA 1 cut(s) 294
BalI TGGCCA 1 cut(s) 399
BanI GGYRCC 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 354
BccI CCATC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 401
BcoDI GTCTC 2 cut(s) 249, 369
BfoI RGCGCY 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 401
BmsI GCATC 2 cut(s) 94, 311
BpiI GAAGAC 1 cut(s) 354
BpmI CTGGAG 2 cut(s) 140, 393
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 254
BsaHI GRCGYC 2 cut(s) 184, 460
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 455
Bsc4I CCNNNNNNNGG 1 cut(s) 487
Bse118I RCCGGY 1 cut(s) 186
Bse1I ACTGG 2 cut(s) 449, 492
Bse3DI GCAATG 2 cut(s) 388, 424
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 1 cut(s) 455
BseGI GGATG 3 cut(s) 35, 48, 302
BseLI CCNNNNNNNGG 1 cut(s) 487
BseMI GCAATG 2 cut(s) 388, 424
BseNI ACTGG 2 cut(s) 449, 492
BshFI GGCC 2 cut(s) 399, 448
BshNI GGYRCC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 487
BsmAI GTCTC 2 cut(s) 249, 369
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 2 cut(s) 399, 448
Bso31I GGTCTC 1 cut(s) 369
Bsp119I TTCGAA 1 cut(s) 294
BspACI CCGC 2 cut(s) 109, 379
BspANI GGCC 2 cut(s) 399, 448
BspLI GGNNCC 1 cut(s) 185
BspQI GCTCTTC 1 cut(s) 75
BspT104I TTCGAA 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 369
BsrDI GCAATG 2 cut(s) 388, 424
BsrFI RCCGGY 1 cut(s) 186
BsrI ACTGG 2 cut(s) 449, 492
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 455
BssNI GRCGYC 2 cut(s) 184, 460
BssT1I CCWWGG 1 cut(s) 455
Bst2UI CCWGG 1 cut(s) 401
Bst6I CTCTTC 1 cut(s) 75
BstACI GRCGYC 2 cut(s) 184, 460
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 153
BstF5I GGATG 3 cut(s) 35, 48, 302
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstMAI GTCTC 2 cut(s) 249, 369
BstMWI GCNNNNNNNGC 2 cut(s) 190, 429
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 399
BstV2I GAAGAC 1 cut(s) 354
BstXI CCANNNNNNTGG 1 cut(s) 147
BsuRI GGCC 2 cut(s) 399, 448
BtsCI GGATG 3 cut(s) 35, 48, 302
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 153
CfoI GCGC 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 186
CseI GACGC 1 cut(s) 449
CviAII CATG 1 cut(s) 414
CviJI RGCY 9 cut(s) 27, 151, 219, 276, 337, 367, 399, 423, 448
CviKI_1 RGCY 9 cut(s) 27, 151, 219, 276, 337, 367, 399, 423, 448
DinI GGCGCC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 397
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 455
Eco31I GGTCTC 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 399
EcoT14I CCWWGG 1 cut(s) 455
EgeI GGCGCC 1 cut(s) 185
EheI GGCGCC 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 455
FaeI CATG 1 cut(s) 417
FaiI YATR 7 cut(s) 113, 172, 317, 415, 434, 436, 470
FaqI GGGAC 1 cut(s) 344
FatI CATG 1 cut(s) 413
FokI GGATG 3 cut(s) 22, 35, 289
GlaI GCGC 1 cut(s) 185
GsuI CTGGAG 2 cut(s) 140, 393
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 2 cut(s) 399, 448
HapII CCGG 1 cut(s) 187
HgaI GACGC 1 cut(s) 449
HhaI GCGC 1 cut(s) 186
Hin1I GRCGYC 2 cut(s) 184, 460
Hin1II CATG 1 cut(s) 417
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 1 cut(s) 493
HpaII CCGG 1 cut(s) 187
HphI GGTGA 1 cut(s) 202
Hpy188I TCNGA 5 cut(s) 98, 199, 254, 307, 500
Hpy188III TCNNGA 3 cut(s) 228, 271, 372
HpyAV CCTTC 1 cut(s) 254
HpyCH4V TGCA 5 cut(s) 132, 162, 174, 417, 432
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 429
Hsp92I GRCGYC 2 cut(s) 184, 460
Hsp92II CATG 1 cut(s) 417
HspAI GCGC 1 cut(s) 184
KasI GGCGCC 1 cut(s) 183
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 255
LweI GCATC 2 cut(s) 94, 311
MboII GAAGA 7 cut(s) 16, 77, 89, 92, 118, 277, 359
MlsI TGGCCA 1 cut(s) 399
MluNI TGGCCA 1 cut(s) 399
Mly113I GGCGCC 1 cut(s) 184
MmeI TCCRAC 4 cut(s) 63, 121, 222, 330
MnlI CCTC 5 cut(s) 63, 213, 230, 287, 437
Mox20I TGGCCA 1 cut(s) 399
MscI TGGCCA 1 cut(s) 399
Msp20I TGGCCA 1 cut(s) 399
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 401
MvaI CCWGG 1 cut(s) 401
MwoI GCNNNNNNNGC 2 cut(s) 190, 429
NarI GGCGCC 1 cut(s) 184
NlaIII CATG 1 cut(s) 417
NlaIV GGNNCC 1 cut(s) 185
NspV TTCGAA 1 cut(s) 294
PciSI GCTCTTC 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PluTI GGCGCC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 401
SetI ASST 3 cut(s) 246, 369, 405
SfaNI GCATC 2 cut(s) 94, 311
SfoI GGCGCC 1 cut(s) 185
SfuI TTCGAA 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SsiI CCGC 2 cut(s) 109, 379
SspDI GGCGCC 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 399
StyI CCWWGG 1 cut(s) 455
TaqI TCGA 3 cut(s) 288, 294, 321
TscAI CASTG 1 cut(s) 49
TspDTI ATGAA 3 cut(s) 17, 84, 402
TspRI CASTG 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.