Rh4BG176100

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000430
Physical Location & Seq
Reverse (-)
31285027 .. 31285863
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG176100.1

Sequence Viewer

Length: 837 bp
ATGTTCGAGGTCTGGGACAGGCCGAAAACCGAAGACGACTGCTTGACCAAGCTTTCTGGAGACCGCAATGCTCTCATTTCCGGCCAGGTCATCGGTTCATGCAATGGCTTCCTCTGCATATACAATGACTGGCCTAACCCTTGGCGTCTTTACATTTACAATCCCATTACTGGTGAGTCTCTGACTCTTCCAACGCCTGAAATGAAATGCTCCTTTTTTTGTGGCTTAGGGTATAGTCCTATCAGTGATGTGTACAAAGTAGTCATGTTTAAGTATCCGAGTGAAGGTCCTAATAATAAAAGGGAGGTGAAGGTCATGACTGTTGGCTCTGGGATTTGGAGAACCATTGGGGATTTGGGGTTTAATGTTTTAGGGGATGCTGATTCAAAGGGGGTGTATCTTAATGGATTTCTTCACTGGATTGGTGAGTCTTGCAAGGATTCGGTTTCGATATTTGCCTTTGATGTCGAAAATGAGCGCTTCCAAGAGTTGCCACCACATCCTAGTGCTTTAAAAATCAAAACCGTTGAAATCTTCAACGGTTGGCTGTCCATATTTCTTCGCAGAAGAGGTGTCATCAGTGTTTGGGTCATGAAGGATTATGGTGTTGAGGGGTCTTGGACCAAAGAGCTTGAAATTGAAAAGGCAAGTGATTCTCGAGTCTTGATGTCTACAAACAAGGGGCAAGTGTTGATGTTACGTGATTGGGAAATTCACACTTATGATCTTGGAACAAAGAGGTATAAATGGGTTCCTGTCAATGGATTACCATTGGTGTTTCAAGAAATTGCACATACTCCAAGCTTTGTTTTGCTGAAAGACATCATCAAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

278

Amino Acids

31.65

Weight (kDa)

6.13

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 4 - 158 6.6e-06 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 14 - 219 5.4e-26 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 27 - 209 6.3e-06 KIB1-4 beta-propeller
FBA_1 PF07734 31 - 226 1.6e-21 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 671
AciI CCGC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 82
AcsI RAATTY 1 cut(s) 711
AcyI GRCGYC 1 cut(s) 145
AfaI GTAC 1 cut(s) 254
AfeI AGCGCT 1 cut(s) 479
AfiI CCNNNNNNNGG 3 cut(s) 170, 284, 761
AgsI TTSAA 6 cut(s) 387, 530, 538, 635, 641, 782
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 3 cut(s) 52, 631, 804
AluI AGCT 3 cut(s) 52, 631, 804
Alw26I GTCTC 2 cut(s) 54, 183
Ama87I CYCGRG 1 cut(s) 657
Aor51HI AGCGCT 1 cut(s) 479
AoxI GGCC 3 cut(s) 20, 82, 131
ApoI RAATTY 1 cut(s) 711
AspLEI GCGC 1 cut(s) 480
AspS9I GGNCC 2 cut(s) 287, 621
AsuHPI GGTGA 3 cut(s) 185, 319, 437
AvaI CYCGRG 1 cut(s) 657
AvaII GGWCC 2 cut(s) 287, 621
BbsI GAAGAC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 86
BciVI GTATCC 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 54, 183
BfaI CTAG 1 cut(s) 504
BfoI RGCGCY 1 cut(s) 481
BfuI GTATCC 1 cut(s) 285
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 2 cut(s) 287, 621
BmeT110I CYCGRG 1 cut(s) 657
BmgT120I GGNCC 2 cut(s) 287, 621
BmiI GGNNCC 1 cut(s) 753
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 367
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 78
Bpu10I CCTNAGC 1 cut(s) 226
BsaAI YACGTR 1 cut(s) 701
BsaHI GRCGYC 1 cut(s) 145
BsaI GGTCTC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 284, 761
Bse1I ACTGG 3 cut(s) 134, 175, 422
Bse3DI GCAATG 2 cut(s) 73, 109
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 2 cut(s) 382, 499
BseLI CCNNNNNNNGG 3 cut(s) 170, 284, 761
BseMI GCAATG 2 cut(s) 73, 109
BseNI ACTGG 3 cut(s) 134, 175, 422
BshFI GGCC 3 cut(s) 22, 84, 133
BsiHKCI CYCGRG 1 cut(s) 657
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 3 cut(s) 170, 284, 761
BsmAI GTCTC 2 cut(s) 54, 183
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 3 cut(s) 22, 84, 133
Bso31I GGTCTC 1 cut(s) 54
BsoBI CYCGRG 1 cut(s) 657
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 1 cut(s) 724
BspACI CCGC 1 cut(s) 64
BspANI GGCC 3 cut(s) 22, 84, 133
BspHI TCATGA 2 cut(s) 315, 591
BspLI GGNNCC 1 cut(s) 753
BspTNI GGTCTC 1 cut(s) 54
BsrDI GCAATG 2 cut(s) 73, 109
BsrGI TGTACA 1 cut(s) 252
BsrI ACTGG 3 cut(s) 134, 175, 422
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 1 cut(s) 724
BssNI GRCGYC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 3 cut(s) 322, 526, 542
Bst6I CTCTTC 2 cut(s) 192, 562
BstACI GRCGYC 1 cut(s) 145
BstAUI TGTACA 1 cut(s) 252
BstBAI YACGTR 1 cut(s) 701
BstDEI CTNAG 1 cut(s) 226
BstF5I GGATG 2 cut(s) 382, 499
BstH2I RGCGCY 1 cut(s) 481
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 1 cut(s) 727
BstMAI GTCTC 2 cut(s) 54, 183
BstMBI GATC 1 cut(s) 724
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstV2I GAAGAC 1 cut(s) 39
BsuI GTATCC 1 cut(s) 285
BsuRI GGCC 3 cut(s) 22, 84, 133
BtsCI GGATG 2 cut(s) 382, 499
BtsIMutI CAGTG 3 cut(s) 250, 415, 586
CciI TCATGA 2 cut(s) 315, 591
CfoI GCGC 1 cut(s) 480
Cfr13I GGNCC 2 cut(s) 287, 621
CseI GACGC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 253
CviAII CATG 4 cut(s) 99, 265, 316, 592
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 226
DpnI GATC 1 cut(s) 726
DpnII GATC 1 cut(s) 724
DraI TTTAAA 1 cut(s) 513
EaeI YGGCCR 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 192, 562
EarI CTCTTC 2 cut(s) 192, 562
Eco130I CCWWGG 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 287, 621
Eco47III AGCGCT 1 cut(s) 479
Eco88I CYCGRG 1 cut(s) 657
EcoO109I RGGNCCY 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 4 cut(s) 102, 268, 319, 595
FaqI GGGAC 1 cut(s) 29
FatI CATG 4 cut(s) 98, 264, 315, 591
FblI GTMKAC 1 cut(s) 671
FokI GGATG 2 cut(s) 389, 486
FspBI CTAG 1 cut(s) 504
GlaI GCGC 1 cut(s) 479
GsuI CTGGAG 1 cut(s) 78
HaeII RGCGCY 1 cut(s) 481
HaeIII GGCC 3 cut(s) 22, 84, 133
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 134
HhaI GCGC 1 cut(s) 480
Hin1I GRCGYC 1 cut(s) 145
Hin1II CATG 4 cut(s) 102, 268, 319, 595
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HindIII AAGCTT 2 cut(s) 50, 802
HinfI GANTC 7 cut(s) 176, 184, 383, 428, 440, 653, 660
HpaII CCGG 1 cut(s) 81
HphI GGTGA 3 cut(s) 185, 319, 437
Hpy166II GTNNAC 2 cut(s) 253, 672
Hpy188I TCNGA 2 cut(s) 183, 279
Hpy188III TCNNGA 6 cut(s) 57, 316, 592, 657, 664, 782
Hpy8I GTNNAC 2 cut(s) 253, 672
HpyAV CCTTC 3 cut(s) 278, 304, 589
HpyCH4III ACNGT 3 cut(s) 322, 526, 542
HpyCH4IV ACGT 1 cut(s) 700
HpyCH4V TGCA 4 cut(s) 102, 117, 435, 791
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 700
Hsp92I GRCGYC 1 cut(s) 145
Hsp92II CATG 4 cut(s) 102, 268, 319, 595
HspAI GCGC 1 cut(s) 478
Kzo9I GATC 1 cut(s) 724
LmnI GCTCC 1 cut(s) 215
LweI GCATC 1 cut(s) 367
MaeI CTAG 1 cut(s) 504
MaeII ACGT 1 cut(s) 700
MaeIII GTNAC 1 cut(s) 696
MalI GATC 1 cut(s) 726
MboI GATC 1 cut(s) 724
MboII GAAGA 6 cut(s) 44, 179, 404, 526, 551, 579
MluCI AATT 3 cut(s) 636, 711, 786
MlyI GAGTC 4 cut(s) 178, 185, 437, 669
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 5 cut(s) 122, 298, 563, 604, 732
MseI TTAA 4 cut(s) 270, 363, 402, 512
MslI CAYNNNNRTG 2 cut(s) 504, 720
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 114
NdeII GATC 1 cut(s) 724
NlaIII CATG 4 cut(s) 102, 268, 319, 595
NlaIV GGNNCC 1 cut(s) 753
PaeR7I CTCGAG 1 cut(s) 657
PagI TCATGA 2 cut(s) 315, 591
PfeI GAWTC 3 cut(s) 383, 440, 653
PleI GAGTC 4 cut(s) 178, 184, 436, 668
PpsI GAGTC 4 cut(s) 178, 184, 436, 668
Ppu21I YACGTR 1 cut(s) 701
PpuMI RGGWCCY 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 753
PspPI GGNCC 2 cut(s) 287, 621
PspPPI RGGWCCY 1 cut(s) 287
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 2 cut(s) 504, 720
SaqAI TTAA 4 cut(s) 270, 363, 402, 512
Sau3AI GATC 1 cut(s) 724
Sau96I GGNCC 2 cut(s) 287, 621
SchI GAGTC 4 cut(s) 178, 185, 437, 669
ScrFI CCNGG 1 cut(s) 86
SfaNI GCATC 1 cut(s) 367
Sfr274I CTCGAG 1 cut(s) 657
SinI GGWCC 2 cut(s) 287, 621
SlaI CTCGAG 1 cut(s) 657
SmiMI CAYNNNNRTG 2 cut(s) 504, 720
SmlI CTYRAG 1 cut(s) 657
SmoI CTYRAG 1 cut(s) 657
Sse9I AATT 3 cut(s) 636, 711, 786
SsiI CCGC 1 cut(s) 64
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 3 cut(s) 322, 526, 542
TaiI ACGT 1 cut(s) 703
TaqI TCGA 4 cut(s) 6, 449, 468, 658
TasI AATT 3 cut(s) 636, 711, 786
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 3 cut(s) 383, 440, 653
Tru1I TTAA 4 cut(s) 270, 363, 402, 512
Tru9I TTAA 4 cut(s) 270, 363, 402, 512
TscAI CASTG 3 cut(s) 250, 422, 586
TspDTI ATGAA 3 cut(s) 87, 218, 608
TspRI CASTG 3 cut(s) 250, 422, 586
VpaK11BI GGWCC 2 cut(s) 287, 621
XapI RAATTY 1 cut(s) 711
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XhoI CTCGAG 1 cut(s) 657
XmiI GTMKAC 1 cut(s) 671
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.