MD04G1020000.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000430
Physical Location & Seq
Forward (+)
2376313 .. 2377497
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1020000.v1.1.491

Sequence Viewer

Length: 1185 bp
ATGGAAAAATCCGAAGTGTGCCTAAGCCACCCCCCAAAGTCCATTCATGGACAGGCAAAACAAGAAGAAGAAGAAAAAGAAGAAAAGCATGATAAGCAAGCCTATATTCTGCAATTACCAGACCACATTATAGTGGAGATCTTCTGCAAAATCCCAACCAAAACGCTCATCCTGTGCCAATGTGTGTGCAAGGATTGGCATCGTTTCCTCTCAGATATTGAATTCATGAGGGGTCTATTTTCACGAACTCATACTTGCCTTTTGGTCCAAGGGAATCCCCAAATACAGTGCCCATGGGGATGGCAGATTAAACACACCCACTTCTTGGTCGGCCTGAAGCACAAGTGGAACGGAAACCATGTGGCACTGAAGCTTTGTAGAGACCCAATTTTCCGAACTGGAGATATACATATTGTGAGTTCATACAACGGTTTGCTTCTATGCGAAGACAGGTTGATGGGATCGGTGAGTCTTTACATATCCAATCCCATTACCGCTGAGTCTTTAGCTATTCCTAAACCTTCGAAAATCCGTTTTACAAATTGTTATTCTGGCTTTGGGTTTAGTCCCATCAGTGATGTCTATAAAGTTGTTCTGATTAATAAGCCAAACAATGAGTCCAAGGAACCGGGGGCGAGGGTTCTCACCGTTGGTTGTACTACTTGGAGAATCATCGAAGGTTTTGAGATTTTCGCATTATCATATGGTACTCATCATAATGGATTTATTCATTGGTTAGGCCGGCGTATGGATTCTCTCGGGATCTTTGCTTTTGATGTTGAAACTGAGCATTTCCAGCAATTTCCACTACCCCCTTGTCAGTTTGATATGGACAATGTGCCTAATTATAAGCTTGGAGTCATGAAAAGTTGCATCTCTTTGACTGTTCATTCGCTTAATAGTGTAACTGTTTGGATGATGAAGGAGTATGGCGTTAAGGAGTCTTGGACCCAAGAGCTTGAAATTTGCAAGAACTCGGGTGACTGTCGTTCATATTATTTCAAATCGGTGAACTTTACCGAGGAAGGAAAAGTATTGATACTAGGTAGGGACGGATGTTTGCGAGTTTATTTTCCTAATACAGGGGGCTTTGCGTGGATTCATATCGATGGGATATCATGGAACAGTGGCGCACTTGTCCACGTTCCAAGCTTTGTTTCACTTAAAGATGTTATCAGAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

395

Amino Acids

44.98

Weight (kDa)

7.56

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 36 - 80 2.4e-08 F-box-like
F-box PF00646 36 - 75 3.1e-08 F-box domain
FBA_1 PF07734 133 - 347 4.2e-14 F-box associated beta propeller domain
FBA_3 PF08268 136 - 351 5.8e-22 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 849
AccB7I CCANNNNNTGG 1 cut(s) 325
AciI CCGC 1 cut(s) 495
AclWI GGATC 2 cut(s) 469, 770
AcsI RAATTY 2 cut(s) 221, 963
AcuI CTGAAG 2 cut(s) 356, 389
AfaI GTAC 2 cut(s) 658, 709
AfiI CCNNNNNNNGG 3 cut(s) 325, 748, 1082
AgsI TTSAA 4 cut(s) 221, 782, 962, 1003
AjuI GAANNNNNNNTTGG 2 cut(s) 1141, 1173
AluBI AGCT 5 cut(s) 373, 509, 853, 958, 1152
AluI AGCT 5 cut(s) 373, 509, 853, 958, 1152
Alw26I GTCTC 1 cut(s) 375
AlwI GGATC 2 cut(s) 469, 770
Ama87I CYCGRG 2 cut(s) 758, 976
AoxI GGCC 2 cut(s) 331, 739
ApoI RAATTY 2 cut(s) 221, 963
ArsI GACNNNNNNTTYG 4 cut(s) 602, 634, 874, 906
AseI ATTAAT 1 cut(s) 600
AspLEI GCGC 1 cut(s) 1133
AspS9I GGNCC 2 cut(s) 265, 948
AsuC2I CCSGG 1 cut(s) 630
AsuHPI GGTGA 4 cut(s) 478, 637, 992, 1021
AsuII TTCGAA 1 cut(s) 524
AvaI CYCGRG 2 cut(s) 758, 976
AvaII GGWCC 2 cut(s) 265, 948
BaeGI GKGCMC 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 453
BccI CCATC 4 cut(s) 294, 451, 578, 1103
BcnI CCSGG 1 cut(s) 630
BcoDI GTCTC 1 cut(s) 375
BfaI CTAG 1 cut(s) 1043
BglII AGATCT 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 630
Bme18I GGWCC 2 cut(s) 265, 948
BmeT110I CYCGRG 2 cut(s) 758, 976
BmgT120I GGNCC 2 cut(s) 265, 948
BmiI GGNNCC 2 cut(s) 627, 950
BmrFI CCNGG 1 cut(s) 630
BmsI GCATC 2 cut(s) 208, 882
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 420
Bpu10I CCTNAGC 1 cut(s) 23
Bpu14I TTCGAA 1 cut(s) 524
BpuMI CCSGG 1 cut(s) 630
Bsa29I ATCGAT 1 cut(s) 1107
BsaBI GATNNNNATC 2 cut(s) 198, 1103
BsaI GGTCTC 1 cut(s) 375
BsaJI CCNNGG 5 cut(s) 268, 293, 621, 629, 1020
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 748, 1082
Bse118I RCCGGY 1 cut(s) 741
Bse1I ACTGG 1 cut(s) 403
Bse8I GATNNNNATC 2 cut(s) 198, 1103
BseCI ATCGAT 1 cut(s) 1107
BseDI CCNNGG 5 cut(s) 268, 293, 621, 629, 1020
BseGI GGATG 4 cut(s) 168, 305, 921, 1061
BseJI GATNNNNATC 2 cut(s) 198, 1103
BseLI CCNNNNNNNGG 3 cut(s) 325, 748, 1082
BseMII CTCAG 3 cut(s) 225, 489, 777
BseNI ACTGG 1 cut(s) 403
BseSI GKGCMC 1 cut(s) 293
BshFI GGCC 2 cut(s) 333, 741
BshVI ATCGAT 1 cut(s) 1107
BsiHKCI CYCGRG 2 cut(s) 758, 976
BsiSI CCGG 2 cut(s) 629, 742
BslFI GGGAC 2 cut(s) 552, 1064
BslI CCNNNNNNNGG 3 cut(s) 325, 748, 1082
BsmAI GTCTC 1 cut(s) 375
BsmFI GGGAC 2 cut(s) 552, 1064
BsnI GGCC 2 cut(s) 333, 741
Bso31I GGTCTC 1 cut(s) 375
BsoBI CYCGRG 2 cut(s) 758, 976
Bsp119I TTCGAA 1 cut(s) 524
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 3 cut(s) 138, 461, 762
Bsp19I CCATGG 1 cut(s) 293
BspACI CCGC 1 cut(s) 495
BspANI GGCC 2 cut(s) 333, 741
BspCNI CTCAG 3 cut(s) 224, 490, 778
BspDI ATCGAT 1 cut(s) 1107
BspHI TCATGA 2 cut(s) 225, 861
BspLI GGNNCC 2 cut(s) 627, 950
BspPI GGATC 2 cut(s) 469, 770
BspT104I TTCGAA 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 375
BsrFI RCCGGY 1 cut(s) 741
BsrI ACTGG 1 cut(s) 403
BssAI RCCGGY 1 cut(s) 741
BssECI CCNNGG 5 cut(s) 268, 293, 621, 629, 1020
BssMI GATC 3 cut(s) 138, 461, 762
BssT1I CCWWGG 3 cut(s) 268, 293, 621
Bst4CI ACNGT 7 cut(s) 288, 431, 649, 886, 910, 986, 1127
BstBI TTCGAA 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 99, 743
BstDEI CTNAG 4 cut(s) 23, 211, 498, 786
BstDSI CCRYGG 1 cut(s) 293
BstENI CCTNNNNNAGG 1 cut(s) 1080
BstF5I GGATG 4 cut(s) 168, 305, 921, 1061
BstHHI GCGC 1 cut(s) 1133
BstKTI GATC 3 cut(s) 141, 464, 765
BstMAI GTCTC 1 cut(s) 375
BstMBI GATC 3 cut(s) 138, 461, 762
BstMWI GCNNNNNNNGC 2 cut(s) 94, 796
BstSCI CCNGG 1 cut(s) 628
BstSLI GKGCMC 1 cut(s) 293
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 2 cut(s) 138, 762
BstXI CCANNNNNNTGG 1 cut(s) 300
BstYI RGATCY 2 cut(s) 138, 762
Bsu15I ATCGAT 1 cut(s) 1107
BsuRI GGCC 2 cut(s) 333, 741
BsuTUI ATCGAT 1 cut(s) 1107
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 4 cut(s) 168, 305, 921, 1061
BtsIMutI CAGTG 4 cut(s) 293, 365, 580, 1132
Cac8I GCNNGC 2 cut(s) 99, 743
CciI TCATGA 2 cut(s) 225, 861
CfoI GCGC 1 cut(s) 1133
Cfr10I RCCGGY 1 cut(s) 741
Cfr13I GGNCC 2 cut(s) 265, 948
ClaI ATCGAT 1 cut(s) 1107
Csp6I GTAC 2 cut(s) 657, 708
CviAII CATG 7 cut(s) 47, 89, 226, 294, 359, 862, 1119
CviQI GTAC 2 cut(s) 657, 708
DdeI CTNAG 4 cut(s) 23, 211, 498, 786
DpnI GATC 3 cut(s) 140, 463, 764
DpnII GATC 3 cut(s) 138, 461, 762
Eco130I CCWWGG 3 cut(s) 268, 293, 621
Eco31I GGTCTC 1 cut(s) 375
Eco32I GATATC 1 cut(s) 1116
Eco47I GGWCC 2 cut(s) 265, 948
Eco57I CTGAAG 2 cut(s) 356, 389
Eco88I CYCGRG 2 cut(s) 758, 976
EcoNI CCTNNNNNAGG 1 cut(s) 1080
EcoRI GAATTC 1 cut(s) 221
EcoRV GATATC 1 cut(s) 1116
EcoT14I CCWWGG 3 cut(s) 268, 293, 621
ErhI CCWWGG 3 cut(s) 268, 293, 621
FaeI CATG 7 cut(s) 50, 92, 229, 297, 362, 865, 1122
FaqI GGGAC 2 cut(s) 552, 1064
FatI CATG 7 cut(s) 46, 88, 225, 293, 358, 861, 1118
FauNDI CATATG 1 cut(s) 703
FokI GGATG 4 cut(s) 155, 312, 928, 1068
FspBI CTAG 1 cut(s) 1043
GlaI GCGC 1 cut(s) 1132
GsuI CTGGAG 1 cut(s) 420
HaeIII GGCC 2 cut(s) 333, 741
HapII CCGG 2 cut(s) 629, 742
HhaI GCGC 1 cut(s) 1133
Hin1II CATG 7 cut(s) 50, 92, 229, 297, 362, 865, 1122
Hin6I GCGC 1 cut(s) 1131
HinP1I GCGC 1 cut(s) 1131
HindIII AAGCTT 3 cut(s) 371, 851, 1150
HinfI GANTC 9 cut(s) 274, 469, 500, 617, 669, 752, 858, 941, 1099
HpaII CCGG 2 cut(s) 629, 742
HphI GGTGA 4 cut(s) 478, 637, 992, 1021
Hpy166II GTNNAC 2 cut(s) 1012, 1141
Hpy188I TCNGA 5 cut(s) 13, 214, 395, 597, 1178
Hpy188III TCNNGA 4 cut(s) 226, 243, 760, 862
Hpy8I GTNNAC 2 cut(s) 1012, 1141
HpyAV CCTTC 4 cut(s) 531, 671, 916, 1019
HpyCH4III ACNGT 7 cut(s) 288, 431, 649, 886, 910, 986, 1127
HpyCH4IV ACGT 1 cut(s) 1143
HpyCH4V TGCA 5 cut(s) 112, 147, 189, 873, 969
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 796
HpyF3I CTNAG 4 cut(s) 23, 211, 498, 786
HpySE526I ACGT 1 cut(s) 1143
Hsp92II CATG 7 cut(s) 50, 92, 229, 297, 362, 865, 1122
HspAI GCGC 1 cut(s) 1131
KroI GCCGGC 1 cut(s) 741
KroNI GCCGGC 1 cut(s) 743
Kzo9I GATC 3 cut(s) 138, 461, 762
LweI GCATC 2 cut(s) 208, 882
MaeI CTAG 1 cut(s) 1043
MaeII ACGT 1 cut(s) 1143
MaeIII GTNAC 2 cut(s) 904, 980
MalI GATC 3 cut(s) 140, 463, 764
MboI GATC 3 cut(s) 138, 461, 762
MboII GAAGA 6 cut(s) 77, 80, 83, 92, 133, 458
MflI RGATCY 2 cut(s) 138, 762
MhlI GDGCHC 1 cut(s) 293
MluCI AATT 7 cut(s) 113, 221, 387, 541, 800, 844, 963
MlyI GAGTC 5 cut(s) 478, 509, 626, 867, 950
MnlI CCTC 5 cut(s) 218, 222, 630, 1015, 1172
MroNI GCCGGC 1 cut(s) 741
MseI TTAA 5 cut(s) 309, 600, 897, 936, 1164
MslI CAYNNNNRTG 4 cut(s) 131, 298, 717, 1107
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 2 cut(s) 629, 742
MspR9I CCNGG 1 cut(s) 630
MwoI GCNNNNNNNGC 2 cut(s) 94, 796
NaeI GCCGGC 1 cut(s) 743
NciI CCSGG 1 cut(s) 630
NcoI CCATGG 1 cut(s) 293
NdeI CATATG 1 cut(s) 703
NdeII GATC 3 cut(s) 138, 461, 762
NgoMIV GCCGGC 1 cut(s) 741
NlaIII CATG 7 cut(s) 50, 92, 229, 297, 362, 865, 1122
NlaIV GGNNCC 2 cut(s) 627, 950
NmuCI GTSAC 1 cut(s) 980
NspV TTCGAA 1 cut(s) 524
PagI TCATGA 2 cut(s) 225, 861
PdiI GCCGGC 1 cut(s) 743
PfeI GAWTC 4 cut(s) 274, 669, 752, 1099
PflMI CCANNNNNTGG 1 cut(s) 325
PleI GAGTC 5 cut(s) 477, 508, 625, 866, 949
PpsI GAGTC 5 cut(s) 477, 508, 625, 866, 949
PshBI ATTAAT 1 cut(s) 600
PsiI TTATAA 1 cut(s) 849
PspN4I GGNNCC 2 cut(s) 627, 950
PspPI GGNCC 2 cut(s) 265, 948
PsuI RGATCY 2 cut(s) 138, 762
RsaI GTAC 2 cut(s) 658, 709
RsaNI GTAC 2 cut(s) 657, 708
RseI CAYNNNNRTG 4 cut(s) 131, 298, 717, 1107
SaqAI TTAA 5 cut(s) 309, 600, 897, 936, 1164
Sau3AI GATC 3 cut(s) 138, 461, 762
Sau96I GGNCC 2 cut(s) 265, 948
SchI GAGTC 5 cut(s) 478, 509, 626, 867, 950
ScrFI CCNGG 1 cut(s) 630
SduI GDGCHC 1 cut(s) 293
SfaNI GCATC 2 cut(s) 208, 882
SfuI TTCGAA 1 cut(s) 524
SinI GGWCC 2 cut(s) 265, 948
SmiMI CAYNNNNRTG 4 cut(s) 131, 298, 717, 1107
Sse9I AATT 7 cut(s) 113, 221, 387, 541, 800, 844, 963
SsiI CCGC 1 cut(s) 495
SspMI CTAG 1 cut(s) 1043
StyD4I CCNGG 1 cut(s) 628
StyI CCWWGG 3 cut(s) 268, 293, 621
TaaI ACNGT 7 cut(s) 288, 431, 649, 886, 910, 986, 1127
TaiI ACGT 1 cut(s) 1146
TaqI TCGA 3 cut(s) 524, 675, 1107
TasI AATT 7 cut(s) 113, 221, 387, 541, 800, 844, 963
TatI WGTACW 1 cut(s) 656
TfiI GAWTC 4 cut(s) 274, 669, 752, 1099
Tru1I TTAA 5 cut(s) 309, 600, 897, 936, 1164
Tru9I TTAA 5 cut(s) 309, 600, 897, 936, 1164
TscAI CASTG 4 cut(s) 293, 372, 580, 1132
TseFI GTSAC 1 cut(s) 980
Tsp45I GTSAC 1 cut(s) 980
TspDTI ATGAA 9 cut(s) 35, 214, 411, 719, 878, 878, 935, 981, 1091
TspGWI ACGGA 3 cut(s) 366, 521, 1068
TspRI CASTG 4 cut(s) 293, 372, 580, 1132
Van91I CCANNNNNTGG 1 cut(s) 325
VpaK11BI GGWCC 2 cut(s) 265, 948
VspI ATTAAT 1 cut(s) 600
XagI CCTNNNNNAGG 1 cut(s) 1080
XapI RAATTY 2 cut(s) 221, 963
XspI CTAG 1 cut(s) 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.