Rw4G024590

F-box protein At3g07870-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
50425424 .. 50426068
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G024590.1

Sequence Viewer

Length: 645 bp
ATGGTCTTGAAGCTTTCGGACCCTAATGGTTTATACAATAGGGTCAATGATTCATATATTGTAGGTTCTAGCAACGGCTTCCTCTGCTTAGTCTGTCATAATCATAAAATTGGCGCTGTGTATTTTAATATACCCAATCCTATTATCAGAGAGTCTATAGCTCTTCCAATCCTTAACGATAGGGGTAATGTTCCACTTGGATTTGGGTTTGGGTTTGAGTTTAGTCCCATAAGTCATGTCTACAAGGTGGTGCTGTTTATAAGAAGAAATCCACCATGTAAGAAGTTGGAGTTTATAGTTTTGACAGTTGGCTCTGGGATTTGGAGAAGCAATGGAAAAGTATGTAGCAGTATTGTGTATACCACAGATACGGTCTTTCATAATGGATTTCTTCATTGGCTTTGCTACTGTAAACGTTCTCGTTCTCGTTTCATACGTGCCTTTGATGTTGAAAGTGAGCGTTTCAAGAACTTACCAATGCCTCCTGCTTGTGAAACTACTGCTAAACTAGGAGTGTTAAATGGTTCACTTTCTATAAGTTGTTTCTCATTTGGTACTTTTAAAGTTTGGCTAATGAAGGAATATGGGGGCAAGAAGTTTTGGACCAGAGAGCTTGAAATTCATGACACAATTCAGGACCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

214

Amino Acids

24.36

Weight (kDa)

9.33

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 16 - 161 1.6e-07 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 20 - 203 3.7e-19 F-box associated beta propeller domain
FBA_1 PF07734 21 - 206 2.5e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 260
AccI GTMKAC 2 cut(s) 240, 359
AciI CCGC 1 cut(s) 640
AclI AACGTT 1 cut(s) 415
AcsI RAATTY 1 cut(s) 618
AfaI GTAC 1 cut(s) 556
AgsI TTSAA 4 cut(s) 10, 452, 466, 617
AluBI AGCT 3 cut(s) 13, 161, 613
AluI AGCT 3 cut(s) 13, 161, 613
ApoI RAATTY 1 cut(s) 618
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 3 cut(s) 19, 603, 637
AvaII GGWCC 3 cut(s) 19, 603, 637
BceAI ACGGC 1 cut(s) 91
BfaI CTAG 2 cut(s) 69, 509
BfmI CTRYAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 117
Bme18I GGWCC 3 cut(s) 19, 603, 637
BmgT120I GGNCC 3 cut(s) 19, 603, 637
BmiI GGNNCC 1 cut(s) 21
BsaAI YACGTR 1 cut(s) 437
Bse3DI GCAATG 1 cut(s) 337
BseMI GCAATG 1 cut(s) 337
BslFI GGGAC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 210
BspACI CCGC 1 cut(s) 640
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 1 cut(s) 21
BspQI GCTCTTC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 337
BssNAI GTATAC 1 cut(s) 360
Bst1107I GTATAC 1 cut(s) 360
Bst4CI ACNGT 3 cut(s) 307, 373, 410
Bst6I CTCTTC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 437
BstDEI CTNAG 1 cut(s) 88
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 156
BstZ17I GTATAC 1 cut(s) 360
CciI TCATGA 1 cut(s) 622
CfoI GCGC 1 cut(s) 116
Cfr13I GGNCC 3 cut(s) 19, 603, 637
Csp6I GTAC 1 cut(s) 555
CviAII CATG 3 cut(s) 236, 276, 623
CviJI RGCY 7 cut(s) 13, 78, 161, 312, 400, 571, 613
CviKI_1 RGCY 7 cut(s) 13, 78, 161, 312, 400, 571, 613
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 1 cut(s) 88
DraI TTTAAA 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco47I GGWCC 3 cut(s) 19, 603, 637
FaeI CATG 3 cut(s) 239, 279, 626
FaqI GGGAC 1 cut(s) 210
FatI CATG 3 cut(s) 235, 275, 622
FblI GTMKAC 2 cut(s) 240, 359
FspBI CTAG 2 cut(s) 69, 509
GlaI GCGC 1 cut(s) 115
HaeII RGCGCY 1 cut(s) 117
HhaI GCGC 1 cut(s) 116
Hin1II CATG 3 cut(s) 239, 279, 626
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 2 cut(s) 50, 152
Hpy166II GTNNAC 4 cut(s) 241, 360, 413, 527
Hpy188I TCNGA 2 cut(s) 19, 149
Hpy188III TCNNGA 4 cut(s) 7, 466, 623, 635
Hpy8I GTNNAC 4 cut(s) 241, 360, 413, 527
HpyAV CCTTC 1 cut(s) 571
HpyCH4III ACNGT 3 cut(s) 307, 373, 410
HpyCH4IV ACGT 2 cut(s) 415, 436
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 88
HpySE526I ACGT 2 cut(s) 415, 436
Hsp92II CATG 3 cut(s) 239, 279, 626
HspAI GCGC 1 cut(s) 114
LguI GCTCTTC 1 cut(s) 168
LpnPI CCDG 4 cut(s) 300, 498, 619, 620
MaeI CTAG 2 cut(s) 69, 509
MaeII ACGT 2 cut(s) 415, 436
MboII GAAGA 3 cut(s) 155, 276, 383
MluCI AATT 3 cut(s) 108, 618, 630
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 2 cut(s) 92, 492
MseI TTAA 4 cut(s) 126, 174, 518, 561
MspA1I CMGCKG 1 cut(s) 642
MwoI GCNNNNNNNGC 1 cut(s) 84
NlaIII CATG 3 cut(s) 239, 279, 626
NlaIV GGNNCC 1 cut(s) 21
PagI TCATGA 1 cut(s) 622
PciSI GCTCTTC 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 433
PfeI GAWTC 1 cut(s) 50
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
Ppu21I YACGTR 1 cut(s) 437
PsiI TTATAA 1 cut(s) 260
Psp1406I AACGTT 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 3 cut(s) 19, 603, 637
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 4 cut(s) 126, 174, 518, 561
Sau96I GGNCC 3 cut(s) 19, 603, 637
SchI GAGTC 1 cut(s) 161
SetI ASST 7 cut(s) 15, 67, 163, 249, 418, 439, 615
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 3 cut(s) 19, 603, 637
Sse9I AATT 3 cut(s) 108, 618, 630
SsiI CCGC 1 cut(s) 640
SspMI CTAG 2 cut(s) 69, 509
TaaI ACNGT 3 cut(s) 307, 373, 410
TaiI ACGT 2 cut(s) 418, 439
TasI AATT 3 cut(s) 108, 618, 630
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 4 cut(s) 126, 174, 518, 561
Tru9I TTAA 4 cut(s) 126, 174, 518, 561
TspDTI ATGAA 6 cut(s) 42, 368, 383, 421, 590, 611
VpaK11BI GGWCC 3 cut(s) 19, 603, 637
XapI RAATTY 1 cut(s) 618
XmiI GTMKAC 2 cut(s) 240, 359
XspI CTAG 2 cut(s) 69, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.